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Gene: Dnajc15 (DnaJ heat shock protein family (Hsp40) member C15) Ictidomys tridecemlineatus

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Symbol:

Dnajc15

Name:

DnaJ heat shock protein family (Hsp40) member C15

RGD ID:

12701312

Description:

ENCODES a protein that exhibits ATPase activator activity (inferred); INVOLVED IN cellular response to starvation (inferred); mitochondrial electron transport, NADH to ubiquinone (inferred); negative regulation of mitochondrial electron transport, NADH to ubiquinone (inferred); ASSOCIATED WITH melanoma (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

dnaJ homolog subfamily C member 15

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	153,209,948 - 153,277,337 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936747	802,218 - 864,299 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936747	800,070 - 864,299 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

melanoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to starvation (IEA)

mitochondrial electron transport, NADH to ubiquinone (IEA)

negative regulation of mitochondrial electron transport, NADH to ubiquinone (IEA)

negative regulation of protein-containing complex assembly (IEA)

protein import into mitochondrial matrix (IEA)

protein transport (IEA)

protein-containing complex assembly (IEA)

regulation of lipid metabolic process (IEA)

Cellular Component

membrane (IEA)

mitochondrial inner membrane (IEA)

mitochondrion (IEA)

PAM complex, Tim23 associated import motor (IEA)

Molecular Function

ATPase activator activity (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Dnajc15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	153,209,948 - 153,277,337 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936747	802,218 - 864,299 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936747	800,070 - 864,299 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNAJC15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	43,023,586 - 43,114,213 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	43,023,203 - 43,114,213 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	43,597,722 - 43,688,349 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	42,495,362 - 42,581,306 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	42,495,338 - 42,579,582	NCBI
Celera	13	24,653,551 - 24,739,491 (+)	NCBI		Celera
Cytogenetic Map	13	q14.11	NCBI
HuRef	13	24,399,583 - 24,485,550 (+)	NCBI		HuRef
CHM1_1	13	43,564,899 - 43,650,843 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	42,242,004 - 42,332,653 (+)	NCBI		T2T-CHM13v2.0

Dnajc15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	78,063,657 - 78,112,357 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	78,058,121 - 78,112,565 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	77,826,217 - 77,874,917 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	77,820,681 - 77,875,125 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	78,226,024 - 78,274,724 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	76,560,372 - 76,609,072 (-)	NCBI		MGSCv36	mm8
Celera	14	75,344,505 - 75,393,010 (-)	NCBI		Celera
Cytogenetic Map	14	D3	NCBI
cM Map	14	41.04	NCBI

Dnajc15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	59,594,314 - 59,658,862 (-)	NCBI		GRCr8
mRatBN7.2	15	53,182,060 - 53,249,675 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	53,184,855 - 53,249,675 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	57,318,520 - 57,383,064 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	58,436,858 - 58,501,407 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	55,267,933 - 55,332,530 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	59,990,131 - 60,056,710 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	59,990,131 - 60,056,710 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	63,670,037 - 63,734,653 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	58,871,147 - 58,937,853 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	58,886,672 - 58,953,492 (-)	NCBI
Celera	15	52,782,956 - 52,846,664 (-)	NCBI		Celera
Cytogenetic Map	15	q11	NCBI

Dnajc15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955518	941,336 - 1,016,968 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955518	941,610 - 1,016,097 (+)	NCBI	ChiLan1.0	ChiLan1.0

DNAJC15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	42,508,312 - 42,585,238 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	33,612,056 - 33,695,643 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	24,193,185 - 24,276,813 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

DNAJC15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	7,746,726 - 7,825,635 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	7,742,396 - 7,818,111 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	7,954,246 - 8,030,851 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	7,949,722 - 8,031,264 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	7,659,250 - 7,736,156 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	7,716,331 - 7,792,913 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	7,726,791 - 7,803,375 (-)	NCBI		UU_Cfam_GSD_1.0

DNAJC15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	24,011,686 - 24,087,040 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	24,011,530 - 24,087,156 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	24,591,428 - 24,668,085 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DNAJC15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	21,160,975 - 21,239,221 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	21,161,312 - 21,239,025 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	22,954,089 - 23,032,478 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dnajc15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624748	12,038,637 - 12,127,800 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624748	12,038,637 - 12,127,763 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005339669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000012803 ⟹ ENSSTOP00000011475

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936747	802,218 - 864,299 (-)	Ensembl

RefSeq Acc Id:

XM_005339669 ⟹ XP_005339726

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	153,209,948 - 153,277,337 (+)	NCBI
SpeTri2.0	NW_004936747	800,070 - 864,299 (-)	NCBI

Sequence:

show sequence

GCCATGGCTGCCGGCGGTGGCGTCGCTTCCAGCGAAACGCTGCGTTACGCCGAGTACTCGCAGC
CCAAGGGGAAACTGCCGGACGCCGAACTCGACCACCGACTGGCAAGAAGTTTGATAGCTGTAGG
ACTGGGTGTTGCAGCTCTTGCATTTGCAGGTCGCTATGCATTTCAGATCTGGAAACCTCTAGAA
CAAGCAATCACAGACACTGCAAGGAAGGTTTCATCTTCTAGCCTTTCGTCCTACTATAAAGGAG
GATTTGAACAGAAAATGAGCAGGCGAGAAGCTAGTCTCATTTTAGGTGTAAGCCCATCTGCTGG
CAAGGCCAAGATTAGAATGGCTCACAAGAGAATCATGATTCTGAATCACCCAGATAAAGGTGGA
TCTCCTTACTTAGCAACCAAAATCAATGAAGCAAAAGACTTGCTGGAAGCAACCACCAAATATT
GATTGATGCTCAAGAGCCAAGATGAAGGAAAAAAATAGAGGACTTAAAAAAAAATAGTCCTGCC
AATTAATCTGAAATATGGTCTTGATTTTCATACACCTATTGACCATAACCTTTTTTCCATCCTT
CAATTATATAATAATAAAAGGTTAATAGACTTGCTTTTTTATTTTCTTTTAAAGGAATCCTGGA
AATTTTGTAGCTGGTATTTTGCCTTATTATTTTCTTTGTAATATTCATACTTTTAATGGTTTTT
GTTTTATTAGTCCTAAACATCCTTCTCTTCCTTCACACACACACACACACACAGTGTACAAAAG
CACGATCATCTCTGGTGCAGTTGGAATTTGGGAGCACTGAGTAGAAGTGTTCTTATGCTTGTAT
TTGTACCTCTCTGTCCTTTGTTTCTTCAGAGGAATTTGAGACTCTGCCTAAGTAAGGTTCTTGA
ATGCTTTGAGACCAACATTGGCTGCCACCTCATGAAGAAATGATCCCATATAATGGAATTTACT
AAATGGTGATTTGTTAAGTAGGGGTTGGGACTTTTTAAAGAACTCTGCTGTCTCTGAGATCCTA
TAACTGAAGCATGAGAACTTGGAGAGCCACTAAAATGATTAAAGATTCATAAAATGAGCCCTCT
GAGGAACAGCTGAAAAGGGCTGGGAGAAAACAGAGGAGTTTGTATTTAATTATAGTCTTTCCAT
ACTGTTTATTTATTTAATTATTCATTCTACAATTTTTATTGACCATCTCTGTTGTGTAAGGCAC
TGTAGTGGGTCCTCTGAGAGTTACAAGTATGAACCAGCTGTGGATTCTGACTCAGAGGAACTTC
TCTATAGAGAATACTGGTAGAGAGTTGCAGATGATATGTTAATGAAGTTCAAAAAATAGAAGAA
TATTTTAAACTCAGTACATGGTGGGGAGGGCCTTTGTGGAACAAGTGGCCCAGAGCTGGGTGTT
TAAAAAGATAATAACACATTCCATATGATTAGTAAGTCAGTATTGTTTCTCCTGAGATCAGAAT
TAGCAGAAATTATTTGCAGAAATAGATTTATTATTTAGTGCAATCATAATGTAGAGTTTCTTCT
CAAAAGCAAGGGATGGACAGAATAGTTATGAAAGGCCAGCTCTGTAATTTAATTGAGAATTTGA
GTCATTCCAGCATTAGCCTGTAATCTCCTTCATTCCCATTTTTCTGCTATGCATGTGCCTCAGA
GTCAAATCTCATTTTGAATACTATCTTCCCAGTGATCTTGGGCAGTTACTTAATTTGCAAGTCT
GTAACCCTCAGGATAAAATAGAGAAAATAATCCTAATAAGCTTGTTGTAGGGAATAAATATGTG
TAAATCATTTAGTCATGTAGCAAATGTCCAAAAAATAAATTACTTCTTTCATTTCACTTTTTTC
CCATTAATTTTATCTTTTAGAACACAAGTTTGAGGGTGTTTTCTGATAATCGTTCATTTTGCTT
TTGAATCTACAATTTGGTGGGGTCATATAGGAGACTGCTCATCTCTAGTCCATGAAGTACCAAC
TGTGGCTGGAGGAGCCACTTCCTGTGATGGCAAATTGGAACTGGTTGTTAGCTGAGAGCCATGG
TTCCCCTCTGCATAGGCTTCTCCCAGGGCTGCTAGAGCTTGTCACACCATAGCAGTTGTGCTGC
AAGTGATGGTTGTCCAAGAGAGGAAATGGATGCTGCCAAACTGTCTTGAGTCAGAGCATTACTT
CTGCCATATTCAGTTGGTCTGAAAGTTACAAAGCCTGCCCAGACAAAGGAAGAGGAAAGAGAGA
GTGTGAAAGAGTCACTGATCATCTTTAATATGTAACCAGGGCATGGTTGATAATTTTTTCTCTT
AATCAAATTAGTAAGGCATTACTTTAAAAATAAATTAGTCATGTACAACTCCTTGATGTATAAG
CCTAGGCAGTTTCAGATAATACAGCTACTGTTTTAGGCAGATATTAATTTAGTAGTAACTCTAA
ATGGCAGTGTAGTTATAAAATTGGAGTTTGACCAGCTACCCACCCTCAACTCCTTATTATCTAT
AAAAAGCTTATTTGAATGGTTACCTAGCTTCAGTAAAGATTGCTTTTATATATCTGCTGTCATT
GCATATTCTGCTTAATTAAACTTTTTGTTGATACTGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005339726	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011475.3
GenBank Protein	KAG3292993	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005339726 ⟸ XM_005339669
- UniProtKB:	I3MJU2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAGGGVASSETLRYAEYSQPKGKLPDAELDHRLARSLIAVGLGVAALAFAGRYAFQIWKPLEQ AITDTARKVSSSSLSSYYKGGFEQKMSRREASLILGVSPSAGKAKIRMAHKRIMILNHPDKGGS PYLATKINEAKDLLEATTKY hide sequence

Ensembl Acc Id:

ENSSTOP00000011475 ⟸ ENSSTOT00000012803

Protein Domains

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000012805	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000012803.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.110	UniProtKB/TrEMBL
InterPro	DnaJ_domain	UniProtKB/TrEMBL
	J_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Dnajc15	ENTREZGENE
PANTHER	DNAJ HOMOLOG SUBFAMILY C MEMBER 15	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
PROSITE	DNAJ_2	UniProtKB/TrEMBL
SMART	DnaJ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46565	UniProtKB/TrEMBL
UniProt	I3MJU2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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