Atg16l2 (autophagy related 16 like 2) - Rat Genome Database

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Gene: Atg16l2 (autophagy related 16 like 2) Ictidomys tridecemlineatus
Analyze
Symbol: Atg16l2
Name: autophagy related 16 like 2
RGD ID: 12700602
Description: INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); negative stranded viral RNA replication (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog); FOUND IN autophagosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: autophagy related 16 like 2, transcript variant X1; autophagy related 16 like 2, transcript variant X2; autophagy related 16 like 2, transcript variant X3; autophagy related 16 like 2, transcript variant X4; autophagy related 16 like 2, transcript variant X5; autophagy related 16 like 2, transcript variant X6; autophagy-related protein 16-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494760,450,871 - 60,484,655 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364982,070,881 - 2,083,968 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364982,070,985 - 2,084,141 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atg16l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494760,450,871 - 60,484,655 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364982,070,881 - 2,083,968 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364982,070,985 - 2,084,141 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG16L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381172,814,411 - 72,843,740 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1172,814,406 - 72,843,674 (+)EnsemblGRCh38hg38GRCh38
GRCh371172,525,456 - 72,540,680 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361172,203,099 - 72,218,328 (+)NCBINCBI36Build 36hg18NCBI36
Celera1169,829,970 - 69,845,200 (+)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1168,820,560 - 68,835,784 (+)NCBIHuRef
CHM1_11172,409,218 - 72,424,444 (+)NCBICHM1_1
T2T-CHM13v2.01172,742,639 - 72,773,369 (+)NCBIT2T-CHM13v2.0
Atg16l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397100,935,521 - 100,951,474 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7100,912,241 - 100,951,458 (-)EnsemblGRCm39 Ensembl
GRCm387101,286,325 - 101,302,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7101,263,034 - 101,302,251 (-)EnsemblGRCm38mm10GRCm38
MGSCv377108,438,130 - 108,450,602 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367101,163,310 - 101,176,338 (-)NCBIMGSCv36mm8
Celera7101,645,700 - 101,658,255 (-)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.54NCBI
Atg16l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,100,946 - 165,123,307 (-)NCBIGRCr8
mRatBN7.21155,687,386 - 155,703,419 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1155,684,564 - 155,703,420 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1163,675,751 - 163,688,057 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01170,855,837 - 170,868,143 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01163,740,004 - 163,752,309 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,401,271 - 166,415,078 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,401,271 - 166,413,564 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01172,590,904 - 172,604,849 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41158,787,778 - 158,800,330 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11158,867,019 - 158,879,347 (-)NCBI
Celera1153,773,419 - 153,785,720 (-)NCBICelera
Cytogenetic Map1q32NCBI
Atg16l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541418,604,505 - 18,618,046 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541418,600,904 - 18,618,048 (-)NCBIChiLan1.0ChiLan1.0
ATG16L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2973,759,803 - 73,790,614 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11174,805,313 - 74,834,038 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01167,893,365 - 67,921,794 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11171,115,768 - 71,144,128 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1171,115,768 - 71,131,081 (+)Ensemblpanpan1.1panPan2
ATG16L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12125,404,667 - 25,433,456 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2125,405,694 - 25,419,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2125,174,599 - 25,197,690 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02125,611,832 - 25,635,160 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2125,613,100 - 25,627,309 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12125,401,211 - 25,419,203 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02125,604,504 - 25,630,698 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02125,521,019 - 25,536,014 (-)NCBIUU_Cfam_GSD_1.0
ATG16L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl97,347,002 - 7,365,625 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.197,346,973 - 7,360,189 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.298,108,638 - 8,122,152 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATG16L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,051,793 - 64,066,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,052,390 - 64,065,972 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604361,815,791 - 61,831,248 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg16l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248174,140,543 - 4,147,597 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248174,123,963 - 4,153,720 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000003809   ⟹   ENSSTOP00000003414
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364982,070,881 - 2,083,968 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000033101   ⟹   ENSSTOP00000027864
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364982,070,881 - 2,083,968 (+)Ensembl
RefSeq Acc Id: XM_021725067   ⟹   XP_021580742
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494760,471,449 - 60,484,655 (+)NCBI
SpeTri2.0NW_0049364982,071,030 - 2,084,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021725070   ⟹   XP_021580745
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494760,471,449 - 60,483,868 (+)NCBI
SpeTri2.0NW_0049364982,071,030 - 2,083,370 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021725072   ⟹   XP_021580747
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494760,471,449 - 60,484,655 (+)NCBI
SpeTri2.0NW_0049364982,070,985 - 2,084,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040284914   ⟹   XP_040140848
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494760,450,871 - 60,484,655 (+)NCBI
RefSeq Acc Id: XM_040284916   ⟹   XP_040140850
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494760,471,449 - 60,484,655 (+)NCBI
RefSeq Acc Id: XM_040284917   ⟹   XP_040140851
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494760,471,542 - 60,484,655 (+)NCBI
RefSeq Acc Id: XP_021580747   ⟸   XM_021725072
- Peptide Label: isoform X1
- UniProtKB: I3M314 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021580742   ⟸   XM_021725067
- Peptide Label: isoform X2
- UniProtKB: A0A287D2V6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021580745   ⟸   XM_021725070
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_040140848   ⟸   XM_040284914
- Peptide Label: isoform X1
- UniProtKB: I3M314 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140850   ⟸   XM_040284916
- Peptide Label: isoform X3
- UniProtKB: I3M314 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140851   ⟸   XM_040284917
- Peptide Label: isoform X4
- UniProtKB: I3M314 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000027864   ⟸   ENSSTOT00000033101
Ensembl Acc Id: ENSSTOP00000003414   ⟸   ENSSTOT00000003809
Protein Domains
Autophagy-related protein


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003790 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003809.3 UniProtKB/TrEMBL
  ENSSTOT00000033101.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro ATG16 UniProtKB/TrEMBL
  Autophagy-rel_prot_16 UniProtKB/TrEMBL
  G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Atg16l2 ENTREZGENE
PANTHER PROTEIN ATG16L2 UniProtKB/TrEMBL
  PTHR19878 UniProtKB/TrEMBL
Pfam ATG16 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A287D2V6 ENTREZGENE, UniProtKB/TrEMBL
  I3M314 ENTREZGENE, UniProtKB/TrEMBL