Rad54l (RAD54 like) - Rat Genome Database

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Gene: Rad54l (RAD54 like) Ictidomys tridecemlineatus
Analyze
Symbol: Rad54l
Name: RAD54 like
RGD ID: 12696290
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP-dependent DNA/DNA annealing activity (inferred); DNA translocase activity (inferred); INVOLVED IN chromosome organization (ortholog); determination of adult lifespan (ortholog); DNA damage response (ortholog); ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); breast ductal carcinoma (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); protein-containing complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA repair and recombination protein RAD54-like; RAD54 like (S. cerevisiae); RAD54-like (S. cerevisiae)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505861,455,182 - 61,491,646 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647427,280,573 - 27,316,428 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647427,276,570 - 27,316,427 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rad54l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505861,455,182 - 61,491,646 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647427,280,573 - 27,316,428 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647427,276,570 - 27,316,427 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD54L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38146,247,688 - 46,278,473 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl146,246,461 - 46,278,480 (+)EnsemblGRCh38hg38GRCh38
GRCh37146,713,360 - 46,744,145 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36146,486,004 - 46,516,732 (+)NCBINCBI36Build 36hg18NCBI36
Build 34146,425,436 - 46,456,165NCBI
Celera145,000,746 - 45,031,525 (+)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef144,829,132 - 44,859,988 (+)NCBIHuRef
CHM1_1146,830,372 - 46,861,163 (+)NCBICHM1_1
T2T-CHM13v2.0146,124,906 - 46,155,694 (+)NCBIT2T-CHM13v2.0
Rad54l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394115,951,458 - 115,980,875 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4115,951,461 - 115,980,887 (-)EnsemblGRCm39 Ensembl
GRCm384116,094,261 - 116,123,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,094,264 - 116,123,690 (-)EnsemblGRCm38mm10GRCm38
MGSCv374115,769,560 - 115,796,295 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364115,594,907 - 115,621,591 (-)NCBIMGSCv36mm8
Celera4114,835,105 - 114,861,841 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.1NCBI
Rad54l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85134,812,158 - 134,841,821 (-)NCBIGRCr8
mRatBN7.25129,575,431 - 129,605,100 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5129,575,378 - 129,605,070 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5132,191,515 - 132,221,172 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05133,946,399 - 133,975,757 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05133,968,540 - 133,998,199 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05134,948,511 - 134,978,125 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5134,948,512 - 134,978,125 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05138,732,242 - 138,762,035 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.15136,209,780 - 136,239,533 (+)NCBI
Celera5128,105,213 - 128,134,839 (-)NCBICelera
Cytogenetic Map5q35NCBI
Rad54l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546411,996,512 - 12,033,490 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546411,996,512 - 12,033,525 (-)NCBIChiLan1.0ChiLan1.0
RAD54L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21180,529,512 - 180,575,654 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11179,671,110 - 179,717,249 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,549,586 - 45,581,711 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1146,905,598 - 46,936,532 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl146,905,598 - 46,936,259 (+)Ensemblpanpan1.1panPan2
RAD54L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11514,111,168 - 14,139,819 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1514,111,157 - 14,139,301 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1514,234,015 - 14,262,340 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01514,264,072 - 14,292,635 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1514,264,092 - 14,292,579 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11514,065,329 - 14,093,894 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01514,133,819 - 14,162,383 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01514,203,309 - 14,231,866 (-)NCBIUU_Cfam_GSD_1.0
RAD54L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6165,152,978 - 165,184,776 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16165,156,833 - 165,184,641 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,636,270 - 152,664,106 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAD54L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12086,510,616 - 86,542,426 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2086,507,248 - 86,542,663 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603330,444,520 - 30,476,524 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rad54l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249062,165,780 - 2,193,764 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249062,164,711 - 2,194,262 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000020032   ⟹   ENSSTOP00000021348
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647427,280,573 - 27,316,428 (+)Ensembl
RefSeq Acc Id: XM_040288609   ⟹   XP_040144543
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505861,455,742 - 61,491,646 (+)NCBI
RefSeq Acc Id: XM_040288610   ⟹   XP_040144544
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505861,455,182 - 61,491,646 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040144543 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144544 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021348.2
GenBank Protein KAG3283062 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040144544   ⟸   XM_040288610
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040144543   ⟸   XM_040288609
- Peptide Label: isoform X1
- UniProtKB: I3NAF1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000021348   ⟸   ENSSTOT00000020032
Protein Domains
Helicase ATP-binding   Helicase C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000029125 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020032.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  SWI2/SNF2 ATPases, N-terminal domain UniProtKB/TrEMBL
InterPro Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
  SNF2_RAD54_helicase_repair UniProtKB/TrEMBL
NCBI Gene Rad54l ENTREZGENE
PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED UniProtKB/TrEMBL
  SNF2/RAD54 FAMILY MEMBER UniProtKB/TrEMBL
Pfam Helicase_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3NAF1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-15 Rad54l  RAD54 like    RAD54 like (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED
2017-02-28 Rad54l  RAD54 like (S. cerevisiae)    RAD54-like (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED