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Gene: Lims1 (LIM zinc finger domain containing 1) Ictidomys tridecemlineatus

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Symbol:

Lims1

Name:

LIM zinc finger domain containing 1

RGD ID:

12653195

Description:

ENCODES a protein that exhibits protein kinase binding (ortholog); protein-containing complex binding (ortholog); zinc ion binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); cell-cell junction organization (ortholog); cell-matrix adhesion (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 7 (ortholog); ectodermal dysplasia 10A (ortholog); ectodermal dysplasia 10B (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog); protein-containing complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LIM and senescent cell antigen-like-containing domain protein 1; LIM zinc finger domain containing 1, transcript variant X1; LIM zinc finger domain containing 1, transcript variant X2; LIM zinc finger domain containing 1, transcript variant X3; LIM zinc finger domain containing 1, transcript variant X4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	92,157,129 - 92,210,709 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936829	187,234 - 240,213 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant distal hereditary motor neuronopathy 7 (ISO)

ectodermal dysplasia 10A (ISO)

ectodermal dysplasia 10B (ISO)

ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-cell adhesion (IEA,ISO)

cell-cell junction organization (IEA,ISO)

cell-matrix adhesion (ISO)

cellular response to transforming growth factor beta stimulus (ISO)

cholangiocyte proliferation (IEA,ISO)

chordate embryonic development (ISO)

epithelial to mesenchymal transition (ISO)

establishment of protein localization (ISO)

establishment or maintenance of cell polarity (ISO)

hepatocyte apoptotic process (ISO)

integrin-mediated signaling pathway (IEA,ISO)

negative regulation of cholangiocyte proliferation (IEA,ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of hepatocyte apoptotic process (ISO)

negative regulation of hepatocyte proliferation (IEA,ISO)

negative regulation of neural precursor cell proliferation (IEA,ISO)

neural precursor cell proliferation (ISO)

positive regulation of canonical NF-kappaB signal transduction (ISO)

positive regulation of cell-substrate adhesion (ISO)

positive regulation of focal adhesion assembly (ISO)

positive regulation of gene expression (ISO)

positive regulation of GTPase activity (ISO)

positive regulation of integrin-mediated signaling pathway (IEA,ISO)

positive regulation of substrate adhesion-dependent cell spreading (IEA)

regulation of epithelial cell proliferation (ISO)

tumor necrosis factor-mediated signaling pathway (ISO)

Cellular Component

anchoring junction (IEA)

cell-cell junction (IEA)

cytoplasm (IEA)

focal adhesion (IEA)

membrane (IEA)

perinuclear region of cytoplasm (ISO)

plasma membrane (IEA)

protein-containing complex (ISO)

Molecular Function

actin binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

protein kinase binding (ISO)

protein-containing complex binding (ISO)

zinc ion binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

integrin mediated signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Lims1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	92,157,129 - 92,210,709 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936829	187,234 - 240,213 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIMS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	108,533,671 - 108,687,246 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	108,533,671 - 108,687,246 (+)	Ensembl			hg38	GRCh38
GRCh37	2	109,150,127 - 109,303,702 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	108,571,199 - 108,667,321 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	108,663,284 - 108,759,405	NCBI
Celera	2	103,464,751 - 103,615,238 (+)	NCBI		Celera
Cytogenetic Map	2	q12.3	NCBI
HuRef	2	102,803,913 - 102,903,724 (+)	NCBI		HuRef
CHM1_1	2	109,154,977 - 109,307,968 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	108,994,291 - 109,147,842 (+)	NCBI		T2T-CHM13v2.0

Lims1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	58,159,164 - 58,260,513 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	58,159,288 - 58,260,513 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	58,323,342 - 58,424,691 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	58,323,466 - 58,424,691 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	57,786,295 - 57,887,437 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	57,718,904 - 57,820,046 (+)	NCBI		MGSCv36	mm8
Celera	10	59,061,688 - 59,162,733 (+)	NCBI		Celera
Cytogenetic Map	10	B4	NCBI
cM Map	10	29.31	NCBI

Lims1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	26,851,364 - 26,961,607 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	26,852,996 - 26,961,606 (+)	Ensembl				GRCr8
mRatBN7.2	20	26,309,833 - 26,418,511 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	26,309,895 - 26,418,500 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	27,370,767 - 27,418,134 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	26,757,119 - 26,804,483 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	27,505,048 - 27,552,462 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	27,895,981 - 28,004,767 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	27,954,433 - 28,002,082 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	29,715,580 - 29,824,252 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	37,349,188 - 37,397,427 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	27,819,971 - 27,867,155 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

Lims1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	12,120,452 - 12,161,255 (+)	Ensembl
ChiLan1.0	NW_004955470	12,142,997 - 12,158,273 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIMS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	20,662,566 - 20,817,774 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	20,665,357 - 20,820,538 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	94,739,338 - 94,928,835 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	109,847,189 - 109,890,827 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

LIMS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	35,192,582 - 35,339,100 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	35,115,177 - 35,261,730 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	36,045,342 - 36,192,076 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	36,045,345 - 36,192,039 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	35,774,284 - 35,920,701 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	36,057,448 - 36,204,222 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	36,249,779 - 36,396,408 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LIMS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	47,606,230 - 47,672,884 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	47,607,737 - 47,704,921 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	49,748,396 - 49,812,059 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIMS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	12,059,347 - 12,210,779 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	12,059,411 - 12,213,064 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666080	7,500,757 - 7,651,520 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lims1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624749	11,720,492 - 11,846,571 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005340933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005340934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021720614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010001352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005340933 ⟹ XP_005340990

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,157,129 - 92,183,595 (-)	NCBI
SpeTri2.0	NW_004936829	214,277 - 240,213 (+)	NCBI

Sequence:

show sequence

TGCCACTATTCTGTGGAATGTTTTCTAGAACTTCTAGAAACCCTCAGTAAATCCAGTCTGCTGT
GCCCCGTAATGCTCTGCTACCGAGCTCTTAACATGAAGTGTTGGTAGCCACCCTGGCCAGCCAG
GCTGACGTGCGTGGGAACAGTGGGAGTGACCCTGGCTAGGAAGCTGGGAGGCCTGGATATTGTT
TCTCCTGTCTCTGCTTCCTGCTGCTCTCGTCCTGAGCTCTGTGCTCCTCAGTACCCATGATGGC
CTTCCCAGGCCGAGCTCGCCCCTGTGCTATTCCAGAGAAAGAAGAAATCCCCCGGACTGTTCTT
AACAGTGTCCAGGAGGCTAATGGGAATGAAGACGAGAGAGCTGTGTCCAAACTGCAGCGCAGAC
AGAGTGATATAAAAGTCTACAAGGAGTTTTGTGACTTTTATGCGAAATTCAACATGGCCAATGC
CCTGGCCAGCGCCACTTGTGAGCGCTGCAAGGGAGGCTTTGCACCTGCTGAGAAGATCGTGAAC
AGTAACGGCGAGCTATACCATGAGCAGTGTTTCGTGTGTGCGCAGTGCTTCCAGCAGTTCCCAG
AAGGGCTCTTCTATGAGTTTGAAGGAAGGAAATATTGTGAACATGATTTTCAGATGCTCTTTGC
TCCTTGCTGCCATCAGTGTGGTGAGTTCATCATTGGCCGAGTTATCAAAGCCATGAATAACAGC
TGGCATCCTGAGTGCTTCCGCTGTGACCTCTGCCAGGAAGTTCTGGCAGACATTGGATTTGTCA
AGAATGCTGGCAGACATTTATGTCGCCCCTGTCATAATCGTGAGAAAGCCAGAGGCCTTGGAAA
ATACATCTGCCAGAAGTGCCATGCCATCATTGACGAACAGCCTTTGATCTTCAAGAATGACCCT
TACCACCCAGACCACTTCAACTGTGCCAACTGCGGGAAAGAGCTGACTGCTGATGCCCGGGAGC
TGAAAGGGGAACTATACTGCCTGCCATGTCATGATAAGATGGGAGTCCCCATCTGTGGTGCCTG
CCGGCGACCCATTGAGGGACGAGTAGTAAATGCCATGGGTAAACAGTGGCATGTGGAGCATTTT
GTTTGTGCCAAGTGTGAGAAACCATTTCTTGGACATCGCCATTATGAGAGGAAGGGCTTGGCAT
ATTGTGAAACCCACTATAACCAGCTATTTGGTGATGTTTGTTTCCACTGCAACCGTGTTATAGA
AGGTGATGTGGTCTCTGCCCTTAACAAGGCCTGGTGTGTGAGCTGCTTTGCCTGTTCCACCTGC
AACACCAAGTTAACACTCAAGAATAAATTTGTGGAGTTTGACATGAAGCCAGTCTGTAAAAAGT
GCTATGAGAAGTTTCCACTGGAGCTGAAGAAAAGACTTAAGAAACTAGCTGAGACCTTAGGAAG
GAAATAACTTCATTATACTTTTTCTTTTCTATACAAAGATGAGATTACCAATGTTACTTGAGTT
GATCCACCCTTATTTAAAACTGTGTATTGCAAAGCTGTTGAGAGTTAAGAATAGTTTTCTTCAT
CTCTTCTGTCTCATTCAAAAAGTAATATAATCATGTTTAAAACACGGATGGAAATTAAGATTTG
CCTATTCACCCATATTAGTTTATTGACATTTTGACTATATAGCAAAAAAAACCCACATGGTTAA
ATGTTAAATTTTAATTAAGGTTCCAAAGTGATGCATAACTGTGCAAAATGAAAGGAGTGGGCTT
TTACCTGACTCAATTTTTTTTTTAAACAAATAAACTTTGTGGTCAAAATTGCCTCCCACTGCTA
TTGGAGAGGATATTGGGAAGAAAAATGACCACCCAAGAAAAGCAAATCTTAGTATGTTTATCAA
GCTGGTAGCTATAAAATGAGTATACACATTACCAAGACAAGAAACAAGAGTATTCAGAACTACT
TGATTTTTTTTTTTTTTTTGGTAAATGCAATAATTATTATGCTTACTTTTCTATTTTGTTTGTG
AACTCTTCCTCTCTATAATTTACTTGATACATAGTTGTAGCTAGCTAGTAGTATACATTTAAAT
TTTTCTGGAAAAAAATGACACCAGGTATCTGAAAATACAACATACTTTATAATATTAAAAATAA
AGTTTTTTTAACGCGTTACATCAATTATGCTTCTAAGCTTAATGTCAAAACACGTATTCTTCAA
ATAGGATATGAAATTAAATTTATGTAGCTTGGAATGTATCACTTAAGAAAAGTGAATGTGGGAT
TGGGGATGCAGCTCAGCGGGAGAGCACTTGCCTTGCATGCATGAGGCCTTGGATTAAGTCCCCA
CCACTGCAAAAAAAGAAGGAGAAAAAAAAAGGATGTGTATGTATTGGTCATATATTTCCTTTAT
AATCATGCTAATACATACGCTTCGTACATAATCAAACTTGCTTTGCCTTAGAAAAATACACTTT
AATCAGGAATTATAGCTATTTCATATAATACCAACTAAAAGCTAAAAATAAGTGCATTGTCTGA
GATTGGTAAACTCAAATTCACTTATCACAGTTAACTTAAAAAGTTTTTTCCCTCAATTTTGGAG
AAAGCCTATAGATATCAATTCCCGTCATCTTATTAGACAAGAATGATGTTTATGTTCAGGTTTT
CCATCTCAAATCTCAAGATCAATTGGATTTATCTACTGTAAGTAGGAGGTATAAATTATAAAAT
AGTACTCTTAAACTGCAAGAGGGATGTTTTAATATCACTTTTAGGTCAAAATTAGTGAATTATT
CTATTTTATTTAAAAAAATTATCCTGAAATTTCTGGTCCTTTCTTTTTGGATAAACTTGTTATA
TAAAGCTTTATGAACATTTTAAAAATGTTACTGCTGCTGTATTATTTAAAAGGAAAGTTGCCAA
GATAGACCTCTAGAAGGAAATTACCGGTTTTTCAAAAAATTGCTGACATATTGCTTTGCCATAA
AGAATATCTCAGGATGCTACCACTCTGCCATTAAAATGTTGTTATGCATGAAGTAAATTTTGAT
CATGCATATTATAGAATAAATTCTATTTCTGTTTTTGATAACTTTTAACCAATTTATTTTTTAG
TGTTCTTTTAGAGATAAAAGAATTATAAATGATCAAAAATAAATAATCAGTATATCATTGTAAG
ATTGTATGTGCTCAGTAGTTTAAAACAATCTTTGCATTTGACTAGAATCAAAATCCCATTGGTG
TGCCTTTGTCAGCTAATAATGACCAGCAATGAAAACCTTGAAAGTATTTATTAAATATTATACT
ATGCATATAGGCAAAATAGGACAGTTTATACTATAGGGTCTTGTATATACCCCTACATTAGAAA
TATGGATCAGAAAAGCAAGCTTTTGTATGTGTGTTTATGGTACTAGGGATTGAATCCAGTGCTT
TGCATATGCTAGTCAAGTGCTGTAACATTGAATTCCATTTCCAGCCCTCCTTTATGTATATTCT
TGATCACTCTGAAGATGTGTGGACTGAACTCTCTTGCCTTTGTTTACAAGTCATACATAGCCAG
GTGCCTCCGATAGCCAGAGGCCCACTGCTGTCTTCGCTTAGTCCTCCTTTAAAATATGAATGAA
CAATATTTCCCAAAGTTCAACTTATTAGGCCTCTAGTA

hide sequence

RefSeq Acc Id:

XM_005340934 ⟹ XP_005340991

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,157,129 - 92,210,709 (-)	NCBI
SpeTri2.0	NW_004936829	187,234 - 240,213 (+)	NCBI

Sequence:

show sequence

ATAAATGCTTTAAAGTGTCAGTAATTGATGTATGTGGAGAGAACTATGACTGCTTTACAGCTTA
AAGAGCTTTCACATTCAGGGCTCTACAGGAGAAGACGAGAGCGTCCTGATAGTTTGAAACTAAA
TGGGCTACCGGAGGAAGAGCTAAGCAACATGGCCAATGCCCTGGCCAGCGCCACTTGTGAGCGC
TGCAAGGGAGGCTTTGCACCTGCTGAGAAGATCGTGAACAGTAACGGCGAGCTATACCATGAGC
AGTGTTTCGTGTGTGCGCAGTGCTTCCAGCAGTTCCCAGAAGGGCTCTTCTATGAGTTTGAAGG
AAGGAAATATTGTGAACATGATTTTCAGATGCTCTTTGCTCCTTGCTGCCATCAGTGTGGTGAG
TTCATCATTGGCCGAGTTATCAAAGCCATGAATAACAGCTGGCATCCTGAGTGCTTCCGCTGTG
ACCTCTGCCAGGAAGTTCTGGCAGACATTGGATTTGTCAAGAATGCTGGCAGACATTTATGTCG
CCCCTGTCATAATCGTGAGAAAGCCAGAGGCCTTGGAAAATACATCTGCCAGAAGTGCCATGCC
ATCATTGACGAACAGCCTTTGATCTTCAAGAATGACCCTTACCACCCAGACCACTTCAACTGTG
CCAACTGCGGGAAAGAGCTGACTGCTGATGCCCGGGAGCTGAAAGGGGAACTATACTGCCTGCC
ATGTCATGATAAGATGGGAGTCCCCATCTGTGGTGCCTGCCGGCGACCCATTGAGGGACGAGTA
GTAAATGCCATGGGTAAACAGTGGCATGTGGAGCATTTTGTTTGTGCCAAGTGTGAGAAACCAT
TTCTTGGACATCGCCATTATGAGAGGAAGGGCTTGGCATATTGTGAAACCCACTATAACCAGCT
ATTTGGTGATGTTTGTTTCCACTGCAACCGTGTTATAGAAGGTGATGTGGTCTCTGCCCTTAAC
AAGGCCTGGTGTGTGAGCTGCTTTGCCTGTTCCACCTGCAACACCAAGTTAACACTCAAGAATA
AATTTGTGGAGTTTGACATGAAGCCAGTCTGTAAAAAGTGCTATGAGAAGTTTCCACTGGAGCT
GAAGAAAAGACTTAAGAAACTAGCTGAGACCTTAGGAAGGAAATAACTTCATTATACTTTTTCT
TTTCTATACAAAGATGAGATTACCAATGTTACTTGAGTTGATCCACCCTTATTTAAAACTGTGT
ATTGCAAAGCTGTTGAGAGTTAAGAATAGTTTTCTTCATCTCTTCTGTCTCATTCAAAAAGTAA
TATAATCATGTTTAAAACACGGATGGAAATTAAGATTTGCCTATTCACCCATATTAGTTTATTG
ACATTTTGACTATATAGCAAAAAAAACCCACATGGTTAAATGTTAAATTTTAATTAAGGTTCCA
AAGTGATGCATAACTGTGCAAAATGAAAGGAGTGGGCTTTTACCTGACTCAATTTTTTTTTTAA
ACAAATAAACTTTGTGGTCAAAATTGCCTCCCACTGCTATTGGAGAGGATATTGGGAAGAAAAA
TGACCACCCAAGAAAAGCAAATCTTAGTATGTTTATCAAGCTGGTAGCTATAAAATGAGTATAC
ACATTACCAAGACAAGAAACAAGAGTATTCAGAACTACTTGATTTTTTTTTTTTTTTTGGTAAA
TGCAATAATTATTATGCTTACTTTTCTATTTTGTTTGTGAACTCTTCCTCTCTATAATTTACTT
GATACATAGTTGTAGCTAGCTAGTAGTATACATTTAAATTTTTCTGGAAAAAAATGACACCAGG
TATCTGAAAATACAACATACTTTATAATATTAAAAATAAAGTTTTTTTAACGCGTTACATCAAT
TATGCTTCTAAGCTTAATGTCAAAACACGTATTCTTCAAATAGGATATGAAATTAAATTTATGT
AGCTTGGAATGTATCACTTAAGAAAAGTGAATGTGGGATTGGGGATGCAGCTCAGCGGGAGAGC
ACTTGCCTTGCATGCATGAGGCCTTGGATTAAGTCCCCACCACTGCAAAAAAAGAAGGAGAAAA
AAAAAGGATGTGTATGTATTGGTCATATATTTCCTTTATAATCATGCTAATACATACGCTTCGT
ACATAATCAAACTTGCTTTGCCTTAGAAAAATACACTTTAATCAGGAATTATAGCTATTTCATA
TAATACCAACTAAAAGCTAAAAATAAGTGCATTGTCTGAGATTGGTAAACTCAAATTCACTTAT
CACAGTTAACTTAAAAAGTTTTTTCCCTCAATTTTGGAGAAAGCCTATAGATATCAATTCCCGT
CATCTTATTAGACAAGAATGATGTTTATGTTCAGGTTTTCCATCTCAAATCTCAAGATCAATTG
GATTTATCTACTGTAAGTAGGAGGTATAAATTATAAAATAGTACTCTTAAACTGCAAGAGGGAT
GTTTTAATATCACTTTTAGGTCAAAATTAGTGAATTATTCTATTTTATTTAAAAAAATTATCCT
GAAATTTCTGGTCCTTTCTTTTTGGATAAACTTGTTATATAAAGCTTTATGAACATTTTAAAAA
TGTTACTGCTGCTGTATTATTTAAAAGGAAAGTTGCCAAGATAGACCTCTAGAAGGAAATTACC
GGTTTTTCAAAAAATTGCTGACATATTGCTTTGCCATAAAGAATATCTCAGGATGCTACCACTC
TGCCATTAAAATGTTGTTATGCATGAAGTAAATTTTGATCATGCATATTATAGAATAAATTCTA
TTTCTGTTTTTGATAACTTTTAACCAATTTATTTTTTAGTGTTCTTTTAGAGATAAAAGAATTA
TAAATGATCAAAAATAAATAATCAGTATATCATTGTAAGATTGTATGTGCTCAGTAGTTTAAAA
CAATCTTTGCATTTGACTAGAATCAAAATCCCATTGGTGTGCCTTTGTCAGCTAATAATGACCA
GCAATGAAAACCTTGAAAGTATTTATTAAATATTATACTATGCATATAGGCAAAATAGGACAGT
TTATACTATAGGGTCTTGTATATACCCCTACATTAGAAATATGGATCAGAAAAGCAAGCTTTTG
TATGTGTGTTTATGGTACTAGGGATTGAATCCAGTGCTTTGCATATGCTAGTCAAGTGCTGTAA
CATTGAATTCCATTTCCAGCCCTCCTTTATGTATATTCTTGATCACTCTGAAGATGTGTGGACT
GAACTCTCTTGCCTTTGTTTACAAGTCATACATAGCCAGGTGCCTCCGATAGCCAGAGGCCCAC
TGCTGTCTTCGCTTAGTCCTCCTTTAAAATATGAATGAACAATATTTCCCAAAGTTCAACTTAT
TAGGCCTCTAGTA

hide sequence

RefSeq Acc Id:

XM_013365506 ⟹ XP_013220960

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,159,856 - 92,183,595 (-)	NCBI
SpeTri2.0	NW_004936829	214,277 - 240,213 (+)	NCBI

Sequence:

show sequence

TGCCACTATTCTGTGGAATGTTTTCTAGAACTTCTAGAAACCCTCAGTAAATCCAGTCTGCTGT
GCCCCGTAATGCTCTGCTACCGAGCTCTTAACATGAAGTGTTGGTAGCCACCCTGGCCAGCCAG
GCTGACGTGCGTGGGAACAGTGGGAGTGACCCTGGCTAGGAAGCTGGGAGGCCTGGATATTGTT
TCTCCTGTCTCTGCTTCCTGCTGCTCTCGTCCTGAGCTCTGTGCTCCTCAGTACCCATGATGGC
CTTCCCAGGCCGAGCTCGCCCCTGTGCTATTCCAGAGAAAGAAGAAATCCCCCGGACTGTTCTT
AACAGTGTCCAGGAGGCTAATGGGAATGAAGACGAGAGAGCTGTGTCCAAACTGCAGCGCAGAC
AGAGTGATATAAAAGTCTACAAGGAGTTTTGTGACTTTTATGCGAAATTCAACATGGCCAATGC
CCTGGCCAGCGCCACTTGTGAGCGCTGCAAGGGAGGCTTTGCACCTGCTGAGAAGATCGTGAAC
AGTAACGGCGAGCTATACCATGAGCAGTGTTTCGTGTGTGCGCAGTGCTTCCAGCAGTTCCCAG
AAGGGCTCTTCTATGAGTTTGAAGGAAGGAAATATTGTGAACATGATTTTCAGATGCTCTTTGC
TCCTTGCTGCCATCAGTGTGGTGAGTTCATCATTGGCCGAGTTATCAAAGCCATGAATAACAGC
TGGCATCCTGAGTGCTTCCGCTGTGACCTCTGCCAGGAAGTTCTGGCAGACATTGGATTTGTCA
AGAATGCTGGCAGACATTTATGTCGCCCCTGTCATAATCGTGAGAAAGCCAGAGGCCTTGGAAA
ATACATCTGCCAGAAGTGCCATGCCATCATTGACGAACAGCCTTTGATCTTCAAGAATGACCCT
TACCACCCAGACCACTTCAACTGTGCCAACTGCGGGAAAGAGCTGACTGCTGATGCCCGGGAGC
TGAAAGGGGAACTATACTGCCTGCCATGTCATGATAAGATGGGAGTCCCCATCTGTGGTGCCTG
CCGGCGACCCATTGAGGGACGAGTAGTAAATGCCATGGGTAAACAGTGGCATGTGGAGCATTTT
GTTTGTGCCAAGTGTGAGAAACCATTTCTTGGACATCGCCATTATGAGAGGAAGGGCTTGGCAT
ATTGTGAAACCCACTATAACCAGCTATTTGGTGATGTTTGTTTCCACTGCAACCGTGTTATAGA
AGGTGATGTGGTCTCTGCCCTTAACAAGGCCTGGTGTGTGAGCTGCTTTGCCTGTTCCACCTGC
AACACCAAGTTAACACTCAAGGATAAGTTTGTTGAAATTGATCTAAAACCAGTCTGCAAACACT
GTTATGAGAAAATGCCAGAAGAATTTAAGAGGCGACTTGCCAAACGGGAGAGAGAAGCAAAGGA
TAAGGACAAGCAGAAAAAGAAAAAGCCAGTCTGTTTGTAAACTTTTCTGTCCCTTCTATCATCA
TTTTCACTACTTTCTTCTTTGGAATAAATTTGTGGAGTTTGACATGAAGCCAGTCTGTAAAAAG
TGCTATGAGAAGTTTCCACTGGAGCTGAAGAAAAGACTTAAGAAACTAGCTGAGACCTTAGGAA
GGAAATAACTTCATTATACTTTTTCTTTTCTATACAAAGATGAGATTACCAATGTTACTTGAGT
TGATCCACCCTTATTTAAAACTGTGTATTGCAAAGCTGTTGAGAGTTAAGAATAGTTTTCTTCA
TCTCTTCTGTCTCATTCAAAAAGTAATATAATCATGTTTAAAACACGGATGGAAATTAAGATTT
GCCTATTCACCCATATTAGTTTATTGACATTTTGACTATATAGCAAAAAAAACCCACATGGTTA
AATGTTAAATTTTAATTAAGGTTCCAAAGTGATGCATAACTGTGCAAAATGAAAGGAGTGGGCT
TTTACCTGACTCAATTTTTTTTTTAAACAAATAAACTTTGTGGTCAAAATTGCCTCCCACTGCT
ATTGGAGAGGATATTGGGAAGAAAAATGACCACCCAAGAAAAGCAAATCTTAGTATGTTTATCA
AGCTGGTAGCTATAAAATGAGTATACACATTACCAAGACAAGAAACAAGAGTATTCAGAACTAC
TTGATTTTTTTTTTTTTTTTGGTAAATGCAATAATTATTATGCTTACTTTTCTATTTTGTTTGT
GAACTCTTCCTCTCTATAATTTACTTGATACATAGTTGTAGCTAGCTAGTAGTATACATTTAAA
TTTTTCTGGAAAAAAATGACACCAGGTATCTGAAAATACAACATACTTTATAATATTAAAAATA
AAGTTTTTTTAACGCGTTACATCAATTATGCTTCTAAGCTTAATGTCAAAACACGTATTCTTCA
AATAGGATATGAAATTAAATTTATGTAGCTTGGAATGTATCACTTAAGAAAAGTGAATGTGGGA
TTGGGGATGCAGCTCAGCGGGAGAGCACTTGCCTTGCATGCATGAGGCCTTGGATTAAGTCCCC
ACCACTGCAAAAAAAGAAGGAGAAAAAAAAAGGATGTGTATGTATTGGTCATATATTTCCTTTA
TAATCATGCTAATACATACGCTTCGTACATAATCAAACTTGCTTTGCCTTAGAAAAATACACTT
TAATCAGGAATTATAGCTATTTCATATAATACCAACTAAAAGCTAAAAATAAGTGCATTGTCTG
AGATTGGTAAACTCAAATTCACTTATCACAGTTAACTTAAAAAGTTTTTTCCCTCAATTTTGGA
GAAAGCCTATAGATATCAATTCCCGTCATCTTATTAGACAAGAATGATGTTTATGTTCAGGTTT
TCCATCTCAAATCTCAAGATCAATTGGATTTATCTACTGTAAGTAGGAGGTATAAATTATAAAA
TAGTACTCTTAAACTGCAAGAGGGATGTTTTAATATCACTTTTAGGTCAAAATTAGTGAATTAT
TCTATTTTATTTAAAAAAATTATCCTGAAATTTCTGGTCCTTTCTTTTTGGATAAACTTGTTAT
ATAAAGCTTTATGAACATTTTAAAAATGTTACTGCTGCTGTATTATTTAAAAGGAAAGTTGCCA
AGATAGACCTCTAGAAGGAAATTACCGGTTTTTCAAAAAATTGCTGACATATTGCTTTGCCATA
AAGAATATCTCAGGATGCTACCACTCTGCCATTAAAATGTTGTTATGCATGAAGTAAATTTTGA
TCATGCATATTATAGAATAAATTCTATTTCTGTTTTTGATAACTTTTAACCAATTTATTTTTTA
GTGTTCTTTTAGAGATAAAAGAATTATAAATGATCAAAAATAAATAATCAGTATATCATTGTAA
GATTGTATGTGCTCAGTAGTTTAAAACAATCTTTGCATTTGACTAGAATCAAAATCCCATTGGT
GTGCCTTTGTCAGCTAATAATGACCAGCAATGAAAACCTTGAAAGTATTTATTAAATATTATAC
TATGCATATAGGCAAAATAGGACAGTTTATACTATAGGGTCTTGTATATACCCCTACATTAGAA
ATATGGATCAGAAAAGCAAGCTTTTGTATGTGTGTTTATGGTACTAGGGATTGAATCCAGTGCT
TTGCATATGCTAGTCAAGTGCTGTAACATTGAATTCCATTTCCAGCCCTCCTTTATGTATATTC
TTGATCACTCTGAAGATGTGTGGACTGAACTCTCTTGCCTTTGTTTACAAGTCATACATAGCCA
GGTGCCTCCGATAGCCAGAGGCCCACTGCTGTCTTCGCTTAGTCCTCCTTTAAAATATGAATGA
ACAATATTTCCCAAAGTTCAACTTATTAGGCCTCTAGTA

hide sequence

RefSeq Acc Id:

XM_021720614 ⟹ XP_021576289

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,159,856 - 92,182,983 (-)	NCBI
SpeTri2.0	NW_004936829	214,841 - 240,213 (+)	NCBI

Sequence:

show sequence

CCGAGGGTGACCCACAATGCAGCGTATTCCAGGGAGGCAAACAGGTTGCCTTGTCATGTAGAGC
TTGTGCTGGAGGACACACAGAGATGAAGGAAAGTGCTGTCTTCACAGGAAGAGTACAACATGGC
CAATGCCCTGGCCAGCGCCACTTGTGAGCGCTGCAAGGGAGGCTTTGCACCTGCTGAGAAGATC
GTGAACAGTAACGGCGAGCTATACCATGAGCAGTGTTTCGTGTGTGCGCAGTGCTTCCAGCAGT
TCCCAGAAGGGCTCTTCTATGAGTTTGAAGGAAGGAAATATTGTGAACATGATTTTCAGATGCT
CTTTGCTCCTTGCTGCCATCAGTGTGGTGAGTTCATCATTGGCCGAGTTATCAAAGCCATGAAT
AACAGCTGGCATCCTGAGTGCTTCCGCTGTGACCTCTGCCAGGAAGTTCTGGCAGACATTGGAT
TTGTCAAGAATGCTGGCAGACATTTATGTCGCCCCTGTCATAATCGTGAGAAAGCCAGAGGCCT
TGGAAAATACATCTGCCAGAAGTGCCATGCCATCATTGACGAACAGCCTTTGATCTTCAAGAAT
GACCCTTACCACCCAGACCACTTCAACTGTGCCAACTGCGGGAAAGAGCTGACTGCTGATGCCC
GGGAGCTGAAAGGGGAACTATACTGCCTGCCATGTCATGATAAGATGGGAGTCCCCATCTGTGG
TGCCTGCCGGCGACCCATTGAGGGACGAGTAGTAAATGCCATGGGTAAACAGTGGCATGTGGAG
CATTTTGTTTGTGCCAAGTGTGAGAAACCATTTCTTGGACATCGCCATTATGAGAGGAAGGGCT
TGGCATATTGTGAAACCCACTATAACCAGCTATTTGGTGATGTTTGTTTCCACTGCAACCGTGT
TATAGAAGGTGATGTGGTCTCTGCCCTTAACAAGGCCTGGTGTGTGAGCTGCTTTGCCTGTTCC
ACCTGCAACACCAAGTTAACACTCAAGGATAAGTTTGTTGAAATTGATCTAAAACCAGTCTGCA
AACACTGTTATGAGAAAATGCCAGAAGAATTTAAGAGGCGACTTGCCAAACGGGAGAGAGAAGC
AAAGGATAAGGACAAGCAGAAAAAGAAAAAGCCAGTCTGTTTGTAAACTTTTCTGTCCCTTCTA
TCATCATTTTCACTACTTTCTTCTTTGGAATAAATTTGTGGAGTTTGACATGAAGCCAGTCTGT
AAAAAGTGCTATGAGAAGTTTCCACTGGAGCTGAAGAAAAGACTTAAGAAACTAGCTGAGACCT
TAGGAAGGAAATAACTTCATTATACTTTTTCTTTTCTATACAAAGATGAGATTACCAATGTTAC
TTGAGTTGATCCACCCTTATTTAAAACTGTGTATTGCAAAGCTGTTGAGAGTTAAGAATAGTTT
TCTTCATCTCTTCTGTCTCATTCAAAAAGTAATATAATCATGTTTAAAACACGGATGGAAATTA
AGATTTGCCTATTCACCCATATTAGTTTATTGACATTTTGACTATATAGCAAAAAAAACCCACA
TGGTTAAATGTTAAATTTTAATTAAGGTTCCAAAGTGATGCATAACTGTGCAAAATGAAAGGAG
TGGGCTTTTACCTGACTCAATTTTTTTTTTAAACAAATAAACTTTGTGGTCAAAATTGCCTCCC
ACTGCTATTGGAGAGGATATTGGGAAGAAAAATGACCACCCAAGAAAAGCAAATCTTAGTATGT
TTATCAAGCTGGTAGCTATAAAATGAGTATACACATTACCAAGACAAGAAACAAGAGTATTCAG
AACTACTTGATTTTTTTTTTTTTTTTGGTAAATGCAATAATTATTATGCTTACTTTTCTATTTT
GTTTGTGAACTCTTCCTCTCTATAATTTACTTGATACATAGTTGTAGCTAGCTAGTAGTATACA
TTTAAATTTTTCTGGAAAAAAATGACACCAGGTATCTGAAAATACAACATACTTTATAATATTA
AAAATAAAGTTTTTTTAACGCGTTACATCAATTATGCTTCTAAGCTTAATGTCAAAACACGTAT
TCTTCAAATAGGATATGAAATTAAATTTATGTAGCTTGGAATGTATCACTTAAGAAAAGTGAAT
GTGGGATTGGGGATGCAGCTCAGCGGGAGAGCACTTGCCTTGCATGCATGAGGCCTTGGATTAA
GTCCCCACCACTGCAAAAAAAGAAGGAGAAAAAAAAAGGATGTGTATGTATTGGTCATATATTT
CCTTTATAATCATGCTAATACATACGCTTCGTACATAATCAAACTTGCTTTGCCTTAGAAAAAT
ACACTTTAATCAGGAATTATAGCTATTTCATATAATACCAACTAAAAGCTAAAAATAAGTGCAT
TGTCTGAGATTGGTAAACTCAAATTCACTTATCACAGTTAACTTAAAAAGTTTTTTCCCTCAAT
TTTGGAGAAAGCCTATAGATATCAATTCCCGTCATCTTATTAGACAAGAATGATGTTTATGTTC
AGGTTTTCCATCTCAAATCTCAAGATCAATTGGATTTATCTACTGTAAGTAGGAGGTATAAATT
ATAAAATAGTACTCTTAAACTGCAAGAGGGATGTTTTAATATCACTTTTAGGTCAAAATTAGTG
AATTATTCTATTTTATTTAAAAAAATTATCCTGAAATTTCTGGTCCTTTCTTTTTGGATAAACT
TGTTATATAAAGCTTTATGAACATTTTAAAAATGTTACTGCTGCTGTATTATTTAAAAGGAAAG
TTGCCAAGATAGACCTCTAGAAGGAAATTACCGGTTTTTCAAAAAATTGCTGACATATTGCTTT
GCCATAAAGAATATCTCAGGATGCTACCACTCTGCCATTAAAATGTTGTTATGCATGAAGTAAA
TTTTGATCATGCATATTATAGAATAAATTCTATTTCTGTTTTTGATAACTTTTAACCAATTTAT
TTTTTAGTGTTCTTTTAGAGATAAAAGAATTATAAATGATCAAAAATAAATAATCAGTATATCA
TTGTAAGATTGTATGTGCTCAGTAGTTTAAAACAATCTTTGCATTTGACTAGAATCAAAATCCC
ATTGGTGTGCCTTTGTCAGCTAATAATGACCAGCAATGAAAACCTTGAAAGTATTTATTAAATA
TTATACTATGCATATAGGCAAAATAGGACAGTTTATACTATAGGGTCTTGTATATACCCCTACA
TTAGAAATATGGATCAGAAAAGCAAGCTTTTGTATGTGTGTTTATGGTACTAGGGATTGAATCC
AGTGCTTTGCATATGCTAGTCAAGTGCTGTAACATTGAATTCCATTTCCAGCCCTCCTTTATGT
ATATTCTTGATCACTCTGAAGATGTGTGGACTGAACTCTCTTGCCTTTGTTTACAAGTCATACA
TAGCCAGGTGCCTCCGATAGCCAGAGGCCCACTGCTGTCTTCGCTTAGTCCTCCTTTAAAATAT
GAATGAACAATATTTCCCAAAGTTCAACTTATTAGGCCTCTAGTA

hide sequence

RefSeq Acc Id:

XM_040270883 ⟹ XP_040126817

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,157,129 - 92,183,595 (-)	NCBI

RefSeq Acc Id:

XM_040270884 ⟹ XP_040126818

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,157,129 - 92,183,595 (-)	NCBI

RefSeq Acc Id:

XM_040270885 ⟹ XP_040126819

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,159,856 - 92,210,709 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005340990	(Get FASTA)	NCBI Sequence Viewer
	XP_005340991	(Get FASTA)	NCBI Sequence Viewer
	XP_013220960	(Get FASTA)	NCBI Sequence Viewer
	XP_021576289	(Get FASTA)	NCBI Sequence Viewer
	XP_040126817	(Get FASTA)	NCBI Sequence Viewer
	XP_040126818	(Get FASTA)	NCBI Sequence Viewer
	XP_040126819	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000014072.2
	ENSSTOP00000021358.2
GenBank Protein	KAG3268173	(Get FASTA)	NCBI Sequence Viewer
	KAG3268174	(Get FASTA)	NCBI Sequence Viewer
	KAG3268175	(Get FASTA)	NCBI Sequence Viewer
	KAG3268176	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005340991 ⟸ XM_005340934
- Peptide Label:	isoform X6
- UniProtKB:	I3MQ88 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYVERTMTALQLKELSHSGLYRRRRERPDSLKLNGLPEEELSNMANALASATCERCKGGFAPAE KIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKA MNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIF KNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWH VEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFA CSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK hide sequence

RefSeq Acc Id:	XP_005340990 ⟸ XM_005340933
- Peptide Label:	isoform X4
- UniProtKB:	I3MQ88 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMAFPGRARPCAIPEKEEIPRTVLNSVQEANGNEDERAVSKLQRRQSDIKVYKEFCDFYAKFNM ANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM LFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARG LGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPIC GACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNR VIEGDVVSALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAET LGRK hide sequence

RefSeq Acc Id:	XP_013220960 ⟸ XM_013365506
- Peptide Label:	isoform X1
- UniProtKB:	I3NAG1 (UniProtKB/TrEMBL), I3MQ88 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMAFPGRARPCAIPEKEEIPRTVLNSVQEANGNEDERAVSKLQRRQSDIKVYKEFCDFYAKFNM ANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM LFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARG LGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPIC GACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNR VIEGDVVSALNKAWCVSCFACSTCNTKLTLKDKFVEIDLKPVCKHCYEKMPEEFKRRLAKRERE AKDKDKQKKKKPVCL hide sequence

RefSeq Acc Id:	XP_021576289 ⟸ XM_021720614
- Peptide Label:	isoform X7
- UniProtKB:	I3MQ88 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ MLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAR GLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPI CGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCN RVIEGDVVSALNKAWCVSCFACSTCNTKLTLKDKFVEIDLKPVCKHCYEKMPEEFKRRLAKRER EAKDKDKQKKKKPVCL hide sequence

RefSeq Acc Id:	XP_040126817 ⟸ XM_040270883
- Peptide Label:	isoform X2
- UniProtKB:	I3MQ88 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040126818 ⟸ XM_040270884
- Peptide Label:	isoform X3
- UniProtKB:	I3MQ88 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040126819 ⟸ XM_040270885
- Peptide Label:	isoform X5
- UniProtKB:	I3MQ88 (UniProtKB/TrEMBL)

Protein Domains

LIM zinc-binding

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000015716	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000015721.3	UniProtKB/TrEMBL
	ENSSTOT00000028573.2	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	LIMS1/2-like_LIM1	UniProtKB/TrEMBL
	PINCH-1-4-like	UniProtKB/TrEMBL
	PINCH-1/2-like	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	Lims1	ENTREZGENE
PANTHER	LIM AND SENESCENT CELL ANTIGEN-LIKE-CONTAINING DOMAIN PROTEIN	UniProtKB/TrEMBL
	LIM AND SENESCENT CELL ANTIGEN-LIKE-CONTAINING DOMAIN PROTEIN 1	UniProtKB/TrEMBL
	PTHR24210	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
PIRSF	PINCH	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
SMART	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	I3MQ88	ENTREZGENE, UniProtKB/TrEMBL
	I3NAG1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

RGD Manual Annotations