Sall1 (spalt like transcription factor 1) - Rat Genome Database

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Gene: Sall1 (spalt like transcription factor 1) Ictidomys tridecemlineatus
Analyze
Symbol: Sall1
Name: spalt like transcription factor 1
RGD ID: 12649604
Description: ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); central nervous system neuron differentiation (ortholog); forelimb morphogenesis (ortholog); ASSOCIATED WITH Blau syndrome (ortholog); CAKUT (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN NuRD complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sal-like 1; sal-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934955,465,986 - 55,483,143 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364754,106,084 - 4,121,413 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364754,106,663 - 4,121,356 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adrenal gland development  (IEA)
branching involved in ureteric bud morphogenesis  (ISO)
central nervous system neuron differentiation  (ISO)
embryonic digestive tract development  (IEA)
embryonic digit morphogenesis  (IEA)
forelimb morphogenesis  (ISO)
GABAergic neuron differentiation  (ISO)
gonad development  (IEA)
heart development  (IEA)
hindlimb morphogenesis  (ISO)
inductive cell-cell signaling  (ISO)
kidney development  (IEA)
kidney epithelium development  (ISO)
limb development  (IEA)
mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis  (ISO)
mesenchymal to epithelial transition involved in metanephros morphogenesis  (IEA,ISO)
negative regulation of DNA-templated transcription  (IEA)
negative regulation of ectoderm development  (ISO)
negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  (ISO)
negative regulation of mesoderm development  (ISO)
negative regulation of smoothened signaling pathway  (ISO)
negative regulation of transcription by RNA polymerase II  (IEA,ISO)
neural tube closure  (ISO)
neural tube development  (ISO)
neuron differentiation  (ISO)
olfactory bulb development  (ISO)
olfactory bulb interneuron differentiation  (ISO)
olfactory bulb mitral cell layer development  (IEA)
olfactory nerve development  (ISO)
pituitary gland development  (IEA)
positive regulation of branching involved in ureteric bud morphogenesis  (ISO)
positive regulation of DNA-templated transcription  (IEA)
positive regulation of neuron differentiation  (ISO)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
positive regulation of Wnt signaling pathway  (IEA)
regulation of neuroblast proliferation  (ISO)
regulation of transcription by RNA polymerase II  (IEA)
smoothened signaling pathway  (ISO)
transcription by RNA polymerase II  (ISO)
ureteric bud development  (ISO)
ureteric bud invasion  (ISO)
ventricular septum development  (ISO)

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Sall1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934955,465,986 - 55,483,143 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364754,106,084 - 4,121,413 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364754,106,663 - 4,121,356 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SALL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381651,135,982 - 51,152,334 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1651,135,982 - 51,152,334 (-)EnsemblGRCh38hg38GRCh38
GRCh371651,169,893 - 51,185,181 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361649,727,387 - 49,742,684 (-)NCBINCBI36Build 36hg18NCBI36
Build 341649,727,829 - 49,742,653NCBI
Celera1635,686,254 - 35,701,557 (-)NCBICelera
Cytogenetic Map16q12.1NCBI
HuRef1637,057,983 - 37,073,288 (-)NCBIHuRef
CHM1_11652,577,216 - 52,592,517 (-)NCBICHM1_1
T2T-CHM13v2.01656,933,839 - 56,950,190 (-)NCBIT2T-CHM13v2.0
Sall1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39889,753,867 - 89,770,790 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl889,753,863 - 89,770,790 (-)EnsemblGRCm39 Ensembl
GRCm38889,027,242 - 89,044,162 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl889,027,235 - 89,044,162 (-)EnsemblGRCm38mm10GRCm38
MGSCv37891,551,141 - 91,568,061 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36891,918,348 - 91,932,544 (-)NCBIMGSCv36mm8
Celera893,321,670 - 93,338,514 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map843.51NCBI
Sall1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81934,179,316 - 34,196,278 (+)NCBIGRCr8
mRatBN7.21918,005,782 - 18,022,705 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1918,007,503 - 18,022,705 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1919,687,226 - 19,702,424 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01924,881,820 - 24,897,018 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01927,838,998 - 27,854,185 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01923,387,737 - 23,405,025 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1923,389,375 - 23,405,039 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01934,377,838 - 34,395,131 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41919,277,337 - 19,293,298 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11919,283,733 - 19,298,618 (+)NCBI
Celera1917,896,753 - 17,911,869 (+)NCBICelera
Cytogenetic Map19p11NCBI
Sall1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554339,144,748 - 9,161,171 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554339,146,074 - 9,161,171 (-)NCBIChiLan1.0ChiLan1.0
SALL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21860,591,098 - 60,605,700 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11666,506,188 - 66,522,403 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01631,396,399 - 31,412,753 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11650,274,081 - 50,280,239 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1650,274,090 - 50,284,819 (-)Ensemblpanpan1.1panPan2
SALL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1264,242,742 - 64,260,021 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl264,243,987 - 64,259,521 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha260,816,127 - 60,833,504 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0264,787,008 - 64,804,401 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl264,787,375 - 64,804,352 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1261,612,959 - 61,630,321 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0262,631,291 - 62,648,633 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0263,519,257 - 63,536,638 (+)NCBIUU_Cfam_GSD_1.0
SALL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl633,732,025 - 33,748,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1633,731,666 - 33,748,698 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2630,222,502 - 30,239,229 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SALL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1536,928,711 - 36,944,158 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl536,927,990 - 36,943,630 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604739,548,229 - 39,564,556 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sall1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247575,572,528 - 5,587,617 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247575,572,510 - 5,587,623 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005318173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000021203   ⟹   ENSSTOP00000022904
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364754,106,084 - 4,121,413 (-)Ensembl
RefSeq Acc Id: XM_005318173   ⟹   XP_005318230
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934955,465,986 - 55,483,143 (+)NCBI
SpeTri2.0NW_0049364754,106,663 - 4,121,356 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005318230 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022904.1
GenBank Protein KAG3257304 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005318230   ⟸   XM_005318173
- UniProtKB: I3NEV7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000022904   ⟸   ENSSTOT00000021203
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020885 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021203.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Sal_C2H2-zinc-finger UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Sall1 ENTREZGENE
PANTHER SAL-LIKE PROTEIN UniProtKB/TrEMBL
  SAL-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt I3NEV7 ENTREZGENE, UniProtKB/TrEMBL