Itpr2 (inositol 1,4,5-trisphosphate receptor type 2) - Rat Genome Database

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Pathways
Gene: Itpr2 (inositol 1,4,5-trisphosphate receptor type 2) Ictidomys tridecemlineatus
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Symbol: Itpr2
Name: inositol 1,4,5-trisphosphate receptor type 2
RGD ID: 12644195
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); inositol 1,4,5 trisphosphate binding (ortholog); inositol 1,4,5-trisphosphate-gated calcium channel activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Brain Hypoxia (ortholog); Cardiomegaly (ortholog); FOUND IN axon (ortholog); endoplasmic reticulum membrane (ortholog); sarcoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494582,723,135 - 83,198,963 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936548645,925 - 1,121,888 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936548646,019 - 1,120,426 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse:




Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Itpr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494582,723,135 - 83,198,963 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936548645,925 - 1,121,888 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936548646,019 - 1,120,426 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITPR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,335,352 - 26,833,194 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1226,335,352 - 26,833,194 (-)Ensemblhg38GRCh38
GRCh371226,488,285 - 26,986,127 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,379,552 - 26,877,398 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341226,381,611 - 26,877,398NCBI
Celera1231,634,797 - 32,132,275 (-)NCBICelera
Cytogenetic Map12p11.23NCBI
HuRef1226,258,420 - 26,756,231 (-)NCBIHuRef
CHM1_11226,453,424 - 26,951,168 (-)NCBICHM1_1
T2T-CHM13v2.01226,207,897 - 26,705,197 (-)NCBIT2T-CHM13v2.0
Itpr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396146,009,797 - 146,403,757 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6146,009,797 - 146,403,721 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386146,108,299 - 146,502,258 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6146,108,299 - 146,502,223 (-)Ensemblmm10GRCm38
MGSCv376146,060,002 - 146,450,434 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366146,068,650 - 146,459,082 (-)NCBIMGSCv36mm8
Celera6149,142,524 - 149,540,657 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.7NCBI
Itpr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84180,759,325 - 181,165,361 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4180,760,442 - 181,164,763 (-)EnsemblGRCr8
mRatBN7.24179,028,594 - 179,434,657 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4179,027,281 - 179,404,164 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4185,313,424 - 185,690,245 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04181,097,944 - 181,474,767 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04179,718,376 - 180,095,194 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04180,423,452 - 180,800,088 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4180,538,389 - 180,722,358 (-)Ensemblrn6Rnor6.0
Rnor_5.04244,585,711 - 244,960,429 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44183,677,606 - 184,066,130 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4167,526,971 - 167,901,481 (-)NCBICelera
RGSC_v3.14183,922,730 - 184,311,254 (-)NCBI
RH 3.4 Map41070.3RGD
Cytogenetic Map4q44NCBI
Itpr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541321,291,110 - 21,719,303 (-)Ensembl
ChiLan1.0NW_00495541321,289,673 - 21,719,610 (-)NCBIChiLan1.0ChiLan1.0
ITPR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21069,981,191 - 70,487,626 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11269,978,015 - 70,484,024 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01259,478,206 - 59,984,572 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11262,093,208 - 62,596,018 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1262,092,241 - 62,596,018 (+)EnsemblpanPan2panpan1.1
ITPR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12720,806,670 - 21,278,638 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2720,805,842 - 21,350,083 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2725,103,914 - 25,581,983 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02721,001,355 - 21,474,042 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2721,001,392 - 21,471,311 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12720,812,377 - 21,283,928 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02720,834,447 - 21,306,590 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02725,271,849 - 25,744,599 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
ITPR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl546,935,932 - 47,464,125 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1546,935,923 - 47,465,681 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2550,482,341 - 50,738,864 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITPR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11126,089,480 - 26,574,621 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1126,089,484 - 26,574,950 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660698,498,077 - 8,981,050 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itpr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475212,360,740 - 12,822,287 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475212,360,796 - 12,820,042 (+)NCBIHetGla 1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000015442   ⟹   ENSSTOP00000013829
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936548646,417 - 1,117,887 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000040373   ⟹   ENSSTOP00000024239
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936548645,925 - 1,121,888 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000042111   ⟹   ENSSTOP00000028707
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936548776,658 - 827,393 (+)Ensembl
RefSeq Acc Id: XM_005328880   ⟹   XP_005328937
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494582,723,135 - 83,198,963 (+)NCBI
SpeTri2.0NW_004936548646,019 - 1,120,426 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040280879   ⟹   XP_040136813
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494582,819,364 - 83,198,963 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005328937 (Get FASTA)   NCBI Sequence Viewer  
  XP_040136813 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013829.3
  ENSSTOP00000024239.1
  ENSSTOP00000028707.1
GenBank Protein KAG3292247 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005328937   ⟸   XM_005328880
- Peptide Label: isoform X1
- UniProtKB: A0A287CSI1 (UniProtKB/TrEMBL),   I3MPR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040136813   ⟸   XM_040280879
- Peptide Label: isoform X2
- UniProtKB: I3MPR5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000024239   ⟸   ENSSTOT00000040373
Ensembl Acc Id: ENSSTOP00000028707   ⟸   ENSSTOT00000042111
Ensembl Acc Id: ENSSTOP00000013829   ⟸   ENSSTOT00000015442
Protein Domains
MIR   RIH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015423 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015442.3 UniProtKB/TrEMBL
  ENSSTOT00000040373.1 UniProtKB/TrEMBL
  ENSSTOT00000042111.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  2.80.10.50 UniProtKB/TrEMBL
  IP3 receptor type 1 binding core, RIH domain UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  Ins145_P3_rcpt UniProtKB/TrEMBL
  InsP3_rcpt UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  MIR_dom_sf UniProtKB/TrEMBL
  MIR_motif UniProtKB/TrEMBL
  RIH_assoc-dom UniProtKB/TrEMBL
  RIH_dom UniProtKB/TrEMBL
  Ryanodine_IP3_receptor UniProtKB/TrEMBL
  RyR/IP3R_RIH_dom_sf UniProtKB/TrEMBL
KEGG Report iti:101962301 UniProtKB/TrEMBL
NCBI Gene Itpr2 ENTREZGENE
PANTHER INOSITOL 1,4,5-TRISPHOSPHATE RECEPTOR TYPE 2 UniProtKB/TrEMBL
  MIR DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Ins145_P3_rec UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
  MIR UniProtKB/TrEMBL
  RIH_assoc UniProtKB/TrEMBL
  RYDR_ITPR UniProtKB/TrEMBL
PRINTS INSP3RECEPTR UniProtKB/TrEMBL
PROSITE MIR UniProtKB/TrEMBL
SMART MIR UniProtKB/TrEMBL
Superfamily-SCOP SSF100909 UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  SSF82109 UniProtKB/TrEMBL
UniProt A0A287CSI1 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D5A0_ICTTR UniProtKB/TrEMBL
  I3MPR5 ENTREZGENE, UniProtKB/TrEMBL