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Gene: LOC101971629 (core histone macro-H2A.1) Ictidomys tridecemlineatus

Analyze

Symbol:

LOC101971629 (Ensembl: MACROH2A1)

Name:

core histone macro-H2A.1 (Ensembl:macroH2A.1 histone)

RGD ID:

12638237

Description:

ENCODES a protein that exhibits ADP-D-ribose binding (ortholog); INVOLVED IN dosage compensation by inactivation of X chromosome (ortholog); negative regulation of response to oxidative stress (ortholog); positive regulation of response to oxidative stress (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); myelodysplastic syndrome (ortholog); FOUND IN chromatin (ortholog); nucleosome (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

core histone macro-H2A.1, transcript variant X1; core histone macro-H2A.1, transcript variant X2; core histone macro-H2A.1, transcript variant X3; core histone macro-H2A.1, transcript variant X4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	123,471,582 - 123,531,449 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936597	2,495,862 - 2,556,603 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936597	2,496,489 - 2,556,352 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial adenomatous polyposis 1 (ISO)

Hereditary Neoplastic Syndromes (ISO)

myelodysplastic syndrome (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

DNA repair (IEA)

dosage compensation by inactivation of X chromosome (ISO)

epigenetic regulation of gene expression (IEA)

establishment of protein localization to chromatin (IEA)

negative regulation of cell cycle G2/M phase transition (IEA)

negative regulation of gene expression, epigenetic (IEA)

negative regulation of protein localization to chromosome, telomeric region (IEA)

negative regulation of response to oxidative stress (ISO)

negative regulation of transcription by RNA polymerase II (IEA)

negative regulation of transcription of nucleolar large rRNA by RNA polymerase I (IEA)

nucleosome assembly (IEA)

positive regulation of endodermal cell differentiation (IEA)

positive regulation of keratinocyte differentiation (IEA)

positive regulation of maintenance of mitotic sister chromatid cohesion (IEA)

positive regulation of response to oxidative stress (ISO)

protein poly-ADP-ribosylation (ISO)

regulation of lipid metabolic process (IEA)

regulation of NAD metabolic process (IEA)

regulation of oxidative phosphorylation (IEA)

regulation of rDNA heterochromatin formation (ISO)

regulation of response to oxidative stress (IEA)

transcription initiation-coupled chromatin remodeling (IEA)

Cellular Component

Barr body (IEA)

chromatin (IEA,ISO)

chromosome (IEA)

condensed chromosome (IEA)

nuclear chromosome (IEA)

nucleolus (IEA)

nucleoplasm (IEA)

nucleosome (IEA,ISO)

nucleus (IEA,ISO)

pericentric heterochromatin (IEA)

site of DNA damage (IEA)

Molecular Function

ADP-D-ribose binding (ISO)

ADP-D-ribose modification-dependent protein binding (IEA)

chromatin binding (IEA)

chromatin DNA binding (IEA)

DNA binding (IEA)

double-stranded methylated DNA binding (IEA)

enzyme binding (IEA)

nucleosomal DNA binding (IEA)

promoter-specific chromatin binding (IEA)

protein binding (ISO)

protein heterodimerization activity (IEA)

protein kinase binding (IEA)

protein serine/threonine kinase inhibitor activity (IEA)

rDNA binding (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

structural constituent of chromatin (IEA)

transcription cis-regulatory region binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC101971629
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	123,471,582 - 123,531,449 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936597	2,495,862 - 2,556,603 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936597	2,496,489 - 2,556,352 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MACROH2A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	135,334,381 - 135,399,887 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	135,334,381 - 135,399,914 (-)	Ensembl			hg38	GRCh38
GRCh37	5	134,670,071 - 134,735,577 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	134,697,970 - 134,763,476 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	134,697,969 - 134,762,802	NCBI
Celera	5	130,793,877 - 130,859,396 (-)	NCBI		Celera
Cytogenetic Map	5	q31.1	NCBI
HuRef	5	129,857,754 - 129,923,276 (-)	NCBI		HuRef
CHM1_1	5	134,102,741 - 134,168,247 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	135,861,569 - 135,927,059 (-)	NCBI		T2T-CHM13v2.0

Macroh2a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	56,221,435 - 56,283,439 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	56,221,432 - 56,284,174 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	56,073,622 - 56,135,626 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	56,073,619 - 56,136,361 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	56,174,983 - 56,236,911 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	56,083,796 - 56,145,137 (-)	NCBI		MGSCv36	mm8
Celera	13	57,128,470 - 57,190,557 (-)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	30.06	NCBI

Macroh2a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	8,484,340 - 8,547,268 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	8,484,246 - 8,547,257 (+)	Ensembl				GRCr8
mRatBN7.2	17	8,479,331 - 8,542,071 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	8,479,372 - 8,542,072 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	8,494,921 - 8,557,042 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	10,028,056 - 10,089,627 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	8,491,302 - 8,553,426 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	9,282,109 - 9,344,698 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	9,282,675 - 9,344,678 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	11,440,567 - 11,502,758 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	14,457,307 - 14,520,963 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	8,563,234 - 8,625,826 (+)	NCBI		Celera
RGSC_v3.1	17	14,457,306 - 14,520,963 (+)	NCBI
Cytogenetic Map	17	p14	NCBI

LOC102008188
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	30,497,531 - 30,550,118 (-)	Ensembl
ChiLan1.0	NW_004955408	30,497,531 - 30,550,095 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100974858
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	130,622,460 - 130,690,055 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	128,762,020 - 128,826,904 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	130,727,065 - 130,791,932 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	136,868,521 - 136,933,834 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	136,868,521 - 136,933,834 (-)	Ensembl			panPan2	panpan1.1

MACROH2A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	23,369,957 - 23,448,235 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	23,370,300 - 23,438,219 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	22,118,904 - 22,197,335 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	24,196,790 - 24,265,246 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	24,205,586 - 24,264,536 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	22,875,051 - 22,953,381 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	22,740,600 - 22,819,048 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	23,384,272 - 23,469,034 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

MACROH2A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	137,534,138 - 137,623,886 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	137,535,128 - 137,623,886 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	143,054,432 - 143,135,657 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MACROH2A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	38,113,212 - 38,178,227 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	38,113,195 - 38,168,382 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	39,737,224 - 39,802,999 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LOC101706296
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	11,650,537 - 11,715,999 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624733	11,650,067 - 11,714,399 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005333189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005333190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005333191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005333193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000014865 ⟹ ENSSTOP00000013316

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936597	2,495,862 - 2,556,603 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000030252 ⟹ ENSSTOP00000027170

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936597	2,517,758 - 2,556,603 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000038630 ⟹ ENSSTOP00000028554

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936597	2,495,862 - 2,556,603 (-)	Ensembl

RefSeq Acc Id:

XM_005333189 ⟹ XP_005333246

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	123,471,582 - 123,531,449 (-)	NCBI
SpeTri2.0	NW_004936597	2,496,489 - 2,556,351 (-)	NCBI

Sequence:

show sequence

GTGCTCTTACCTTCACAGTGTGCTTGCTGATCCGCTTCCAGGGCCACTGCCATGTCGAGCCGTG
GTGGGAAGAAGAAGTCCACCAAGACCTCCAGGTCCGCCAAGGCAGGCGTCATCTTTCCTGTGGG
GCGGATGCTGCGGTACATCAAGAAAGGCCACCCCAAGTACAGGATTGGAGTGGGGGCACCCGTG
TACATGGCTGCCGTCTTGGAATACCTGACAGCGGAGATCTTGGAACTGGCTGGCAATGCAGCAA
GAGACAACAAGAAGGGACGGGTCACACCCCGGCACATCCTGCTGGCTGTGGCCAACGACGAAGA
GCTAAATCAGCTGCTAAAAGGAGTCACCATAGCCAGTGGCGGGGTGTTACCGAACATCCACCCT
GAGTTGCTAGCAAAGAAGCGAGGATCCAAAGGAAAGTTGGAAGCCATCATCACCCCACCCCCAG
CCAAAAAGGCCAAGTCTCCATCCCAGAAGAAGCCTGTGTCTAAGAAGGCAGGAGGCAAGAAAGG
GGCCCGGAAATCCAAGAAGAAGCAGGGAGAAGTCAGCAAGGCAGCCAGTGCTGACAGCACGACA
GAGGGCACGCCGGCCGACGGCTTCACCATCCTCTCTACCAAGAGCCTCTTCCTTGGCCAGAAGC
TGAACCTTATTCACAGTGAAATCAGTAATTTAGCCGGCTTTGAGGTGGAGGCCATAATCAATCC
TACCAATGCTGACATTGACCTTAAAGATGACCTAGGAAACACGCTGGAGAAGAAGGGTGGCAAG
GAGTTTGTGGAAGCTGTTTTGGAACTTCGGAAAAAGAACGGGCCCTTGGAAGTAGCTGGAGCTG
CTGTCAGTGCAGGCCATGGCCTGCCTGCCAAGTTTGTGATCCACTGTAATAGTCCAGTCTGGGG
TGCAGACAAGTGTGAAGAACTTCTGGAAAAAACCGTGAAAAACTGCTTGGCCCTGGCTGATGAT
AAGAAGCTGAAATCTATTGCATTTCCATCTATTGGCAGCGGCAGGAACGGGTTCCCGAAGCAGA
CGGCAGCCCAGCTGATTCTGAAGGCCATCTCCAATTACTTCGTGTCCACCATGTCCTCCTCCAT
CAAAACGGTGTACTTCGTGCTTTTTGACAGTGAGAGTATAGGCATCTACGTGCAGGAAATGGCC
AAGCTGGATGCCAACTAGGCTGAAGAACTCCAGGACCAGCCCACAGCGTGTCCCCTGCCTCCAA
TTTGAAAGAAAATAAAGAAAAAAATTCCCCTTCACGCTTACTGGGAGGCAGGAACCCTTTCATT
TTCAGTTTTGCTCATCTAGGGAAAATAAGGTTTTGGTTTCCAGTTTAATTGTTTTTGACCTTCT
AAAATGTTTTACGTTAGCACTGATAGTTGGCATTACTGTTGTTAAGCACTGTGTTGCAGACCGT
GTCTGACTTAGTGTAACCTAGGAGATTTTATAGTTTTATTTTAATGAAATTCTGATTGACGCAG
AGCAGTGGGGAGAACAGTCCCTTTTACATGTCGCAGAAGCCAGGAAGCCCCATTTGTAACCGTG
TGTCGTGGTGCTCTATTGTACACCCAGTGGCGTTCTTTTTACTATATTGTTCTTTTTTTTCCTC
AGAAGAAAAAAATCATGAATTTGCAACAGACCTAATTTTTGTTTACTTTTTGTCTTAATGATGG
ATTTGAAAATGAAAGATTTAAAAGGCAGAACAGAATCTTTGTCCTTAATTATATTTGCAATTTG
GAATTTGTGTGAATTGATTTAGTAAAATGTTAAACTGTT

hide sequence

RefSeq Acc Id:

XM_005333190 ⟹ XP_005333247

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	123,471,582 - 123,531,449 (-)	NCBI
SpeTri2.0	NW_004936597	2,496,489 - 2,556,351 (-)	NCBI

Sequence:

show sequence

GTGCTCTTACCTTCACAGTGTGCTTGCTGATCCGCTTCCAGGGCCACTGCCATGTCGAGCCGTG
GTGGGAAGAAGAAGTCCACCAAGACCTCCAGGTCCGCCAAGGCAGGCGTCATCTTTCCTGTGGG
GCGGATGCTGCGGTACATCAAGAAAGGCCACCCCAAGTACAGGATTGGAGTGGGGGCACCCGTG
TACATGGCTGCCGTCTTGGAATACCTGACAGCGGAGATCTTGGAACTGGCTGGCAATGCAGCAA
GAGACAACAAGAAGGGACGGGTCACACCCCGGCACATCCTGCTGGCTGTGGCCAACGACGAAGA
GCTAAATCAGCTGCTAAAAGGAGTCACCATAGCCAGTGGCGGGGTGTTACCGAACATCCACCCT
GAGTTGCTAGCAAAGAAGCGAGGATCCAAAGGAAAGTTGGAAGCCATCATCACCCCACCCCCAG
CCAAAAAGGCCAAGTCTCCATCCCAGAAGAAGCCTGTGTCTAAGAAGGCAGGAGGCAAGAAAGG
GGCCCGGAAATCCAAGAAGCAGGGAGAAGTCAGCAAGGCAGCCAGTGCTGACAGCACGACAGAG
GGCACGCCGGCCGACGGCTTCACCATCCTCTCTACCAAGAGCCTCTTCCTTGGCCAGAAGCTGA
ACCTTATTCACAGTGAAATCAGTAATTTAGCCGGCTTTGAGGTGGAGGCCATAATCAATCCTAC
CAATGCTGACATTGACCTTAAAGATGACCTAGGAAACACGCTGGAGAAGAAGGGTGGCAAGGAG
TTTGTGGAAGCTGTTTTGGAACTTCGGAAAAAGAACGGGCCCTTGGAAGTAGCTGGAGCTGCTG
TCAGTGCAGGCCATGGCCTGCCTGCCAAGTTTGTGATCCACTGTAATAGTCCAGTCTGGGGTGC
AGACAAGTGTGAAGAACTTCTGGAAAAAACCGTGAAAAACTGCTTGGCCCTGGCTGATGATAAG
AAGCTGAAATCTATTGCATTTCCATCTATTGGCAGCGGCAGGAACGGGTTCCCGAAGCAGACGG
CAGCCCAGCTGATTCTGAAGGCCATCTCCAATTACTTCGTGTCCACCATGTCCTCCTCCATCAA
AACGGTGTACTTCGTGCTTTTTGACAGTGAGAGTATAGGCATCTACGTGCAGGAAATGGCCAAG
CTGGATGCCAACTAGGCTGAAGAACTCCAGGACCAGCCCACAGCGTGTCCCCTGCCTCCAATTT
GAAAGAAAATAAAGAAAAAAATTCCCCTTCACGCTTACTGGGAGGCAGGAACCCTTTCATTTTC
AGTTTTGCTCATCTAGGGAAAATAAGGTTTTGGTTTCCAGTTTAATTGTTTTTGACCTTCTAAA
ATGTTTTACGTTAGCACTGATAGTTGGCATTACTGTTGTTAAGCACTGTGTTGCAGACCGTGTC
TGACTTAGTGTAACCTAGGAGATTTTATAGTTTTATTTTAATGAAATTCTGATTGACGCAGAGC
AGTGGGGAGAACAGTCCCTTTTACATGTCGCAGAAGCCAGGAAGCCCCATTTGTAACCGTGTGT
CGTGGTGCTCTATTGTACACCCAGTGGCGTTCTTTTTACTATATTGTTCTTTTTTTTCCTCAGA
AGAAAAAAATCATGAATTTGCAACAGACCTAATTTTTGTTTACTTTTTGTCTTAATGATGGATT
TGAAAATGAAAGATTTAAAAGGCAGAACAGAATCTTTGTCCTTAATTATATTTGCAATTTGGAA
TTTGTGTGAATTGATTTAGTAAAATGTTAAACTGTT

hide sequence

RefSeq Acc Id:

XM_005333191 ⟹ XP_005333248

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	123,471,582 - 123,531,449 (-)	NCBI
SpeTri2.0	NW_004936597	2,496,489 - 2,556,352 (-)	NCBI

Sequence:

show sequence

TGTGCTCTTACCTTCACAGTGTGCTTGCTGATCCGCTTCCAGGGCCACTGCCATGTCGAGCCGT
GGTGGGAAGAAGAAGTCCACCAAGACCTCCAGGTCCGCCAAGGCAGGCGTCATCTTTCCTGTGG
GGCGGATGCTGCGGTACATCAAGAAAGGCCACCCCAAGTACAGGATTGGAGTGGGGGCACCCGT
GTACATGGCTGCCGTCTTGGAATACCTGACAGCGGAGATCTTGGAACTGGCTGGCAATGCAGCA
AGAGACAACAAGAAGGGACGGGTCACACCCCGGCACATCCTGCTGGCTGTGGCCAACGACGAAG
AGCTAAATCAGCTGCTAAAAGGAGTCACCATAGCCAGTGGCGGGGTGTTACCGAACATCCACCC
TGAGTTGCTAGCAAAGAAGCGAGGATCCAAAGGAAAGTTGGAAGCCATCATCACCCCACCCCCA
GCCAAAAAGGCCAAGTCTCCATCCCAGAAGAAGCCTGTGTCTAAGAAGGCAGGAGGCAAGAAAG
GGGCCCGGAAATCCAAGAAGAAGCAGGGAGAAGTCAGCAAGGCAGCCAGTGCTGACAGCACGAC
AGAGGGCACGCCGGCCGACGGCTTCACCATCCTCTCTACCAAGAGCCTCTTCCTTGGCCAGAAG
TTGCAAGTTGTACAGGCTGACATTGCCTCGATCGACAGTGATGCTGTCGTTCACCCGACAAACA
CTGACTTCTACATCGGTGGTGAAGTAGGAAACACGCTGGAGAAGAAGGGTGGCAAGGAGTTTGT
GGAAGCTGTTTTGGAACTTCGGAAAAAGAACGGGCCCTTGGAAGTAGCTGGAGCTGCTGTCAGT
GCAGGCCATGGCCTGCCTGCCAAGTTTGTGATCCACTGTAATAGTCCAGTCTGGGGTGCAGACA
AGTGTGAAGAACTTCTGGAAAAAACCGTGAAAAACTGCTTGGCCCTGGCTGATGATAAGAAGCT
GAAATCTATTGCATTTCCATCTATTGGCAGCGGCAGGAACGGGTTCCCGAAGCAGACGGCAGCC
CAGCTGATTCTGAAGGCCATCTCCAATTACTTCGTGTCCACCATGTCCTCCTCCATCAAAACGG
TGTACTTCGTGCTTTTTGACAGTGAGAGTATAGGCATCTACGTGCAGGAAATGGCCAAGCTGGA
TGCCAACTAGGCTGAAGAACTCCAGGACCAGCCCACAGCGTGTCCCCTGCCTCCAATTTGAAAG
AAAATAAAGAAAAAAATTCCCCTTCACGCTTACTGGGAGGCAGGAACCCTTTCATTTTCAGTTT
TGCTCATCTAGGGAAAATAAGGTTTTGGTTTCCAGTTTAATTGTTTTTGACCTTCTAAAATGTT
TTACGTTAGCACTGATAGTTGGCATTACTGTTGTTAAGCACTGTGTTGCAGACCGTGTCTGACT
TAGTGTAACCTAGGAGATTTTATAGTTTTATTTTAATGAAATTCTGATTGACGCAGAGCAGTGG
GGAGAACAGTCCCTTTTACATGTCGCAGAAGCCAGGAAGCCCCATTTGTAACCGTGTGTCGTGG
TGCTCTATTGTACACCCAGTGGCGTTCTTTTTACTATATTGTTCTTTTTTTTCCTCAGAAGAAA
AAAATCATGAATTTGCAACAGACCTAATTTTTGTTTACTTTTTGTCTTAATGATGGATTTGAAA
ATGAAAGATTTAAAAGGCAGAACAGAATCTTTGTCCTTAATTATATTTGCAATTTGGAATTTGT
GTGAATTGATTTAGTAAAATGTTAAACTGTT

hide sequence

RefSeq Acc Id:

XM_005333193 ⟹ XP_005333250

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	123,471,582 - 123,531,449 (-)	NCBI
SpeTri2.0	NW_004936597	2,496,489 - 2,556,352 (-)	NCBI

Sequence:

show sequence

TGTGCTCTTACCTTCACAGTGTGCTTGCTGATCCGCTTCCAGGGCCACTGCCATGTCGAGCCGT
GGTGGGAAGAAGAAGTCCACCAAGACCTCCAGGTCCGCCAAGGCAGGCGTCATCTTTCCTGTGG
GGCGGATGCTGCGGTACATCAAGAAAGGCCACCCCAAGTACAGGATTGGAGTGGGGGCACCCGT
GTACATGGCTGCCGTCTTGGAATACCTGACAGCGGAGATCTTGGAACTGGCTGGCAATGCAGCA
AGAGACAACAAGAAGGGACGGGTCACACCCCGGCACATCCTGCTGGCTGTGGCCAACGACGAAG
AGCTAAATCAGCTGCTAAAAGGAGTCACCATAGCCAGTGGCGGGGTGTTACCGAACATCCACCC
TGAGTTGCTAGCAAAGAAGCGAGGATCCAAAGGAAAGTTGGAAGCCATCATCACCCCACCCCCA
GCCAAAAAGGCCAAGTCTCCATCCCAGAAGAAGCCTGTGTCTAAGAAGGCAGGAGGCAAGAAAG
GGGCCCGGAAATCCAAGAAGCAGGGAGAAGTCAGCAAGGCAGCCAGTGCTGACAGCACGACAGA
GGGCACGCCGGCCGACGGCTTCACCATCCTCTCTACCAAGAGCCTCTTCCTTGGCCAGAAGTTG
CAAGTTGTACAGGCTGACATTGCCTCGATCGACAGTGATGCTGTCGTTCACCCGACAAACACTG
ACTTCTACATCGGTGGTGAAGTAGGAAACACGCTGGAGAAGAAGGGTGGCAAGGAGTTTGTGGA
AGCTGTTTTGGAACTTCGGAAAAAGAACGGGCCCTTGGAAGTAGCTGGAGCTGCTGTCAGTGCA
GGCCATGGCCTGCCTGCCAAGTTTGTGATCCACTGTAATAGTCCAGTCTGGGGTGCAGACAAGT
GTGAAGAACTTCTGGAAAAAACCGTGAAAAACTGCTTGGCCCTGGCTGATGATAAGAAGCTGAA
ATCTATTGCATTTCCATCTATTGGCAGCGGCAGGAACGGGTTCCCGAAGCAGACGGCAGCCCAG
CTGATTCTGAAGGCCATCTCCAATTACTTCGTGTCCACCATGTCCTCCTCCATCAAAACGGTGT
ACTTCGTGCTTTTTGACAGTGAGAGTATAGGCATCTACGTGCAGGAAATGGCCAAGCTGGATGC
CAACTAGGCTGAAGAACTCCAGGACCAGCCCACAGCGTGTCCCCTGCCTCCAATTTGAAAGAAA
ATAAAGAAAAAAATTCCCCTTCACGCTTACTGGGAGGCAGGAACCCTTTCATTTTCAGTTTTGC
TCATCTAGGGAAAATAAGGTTTTGGTTTCCAGTTTAATTGTTTTTGACCTTCTAAAATGTTTTA
CGTTAGCACTGATAGTTGGCATTACTGTTGTTAAGCACTGTGTTGCAGACCGTGTCTGACTTAG
TGTAACCTAGGAGATTTTATAGTTTTATTTTAATGAAATTCTGATTGACGCAGAGCAGTGGGGA
GAACAGTCCCTTTTACATGTCGCAGAAGCCAGGAAGCCCCATTTGTAACCGTGTGTCGTGGTGC
TCTATTGTACACCCAGTGGCGTTCTTTTTACTATATTGTTCTTTTTTTTCCTCAGAAGAAAAAA
ATCATGAATTTGCAACAGACCTAATTTTTGTTTACTTTTTGTCTTAATGATGGATTTGAAAATG
AAAGATTTAAAAGGCAGAACAGAATCTTTGTCCTTAATTATATTTGCAATTTGGAATTTGTGTG
AATTGATTTAGTAAAATGTTAAACTGTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005333246	(Get FASTA)	NCBI Sequence Viewer
	XP_005333247	(Get FASTA)	NCBI Sequence Viewer
	XP_005333248	(Get FASTA)	NCBI Sequence Viewer
	XP_005333250	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000013316.3
	ENSSTOP00000027170.1
	ENSSTOP00000028554.1
GenBank Protein	KAG3265802	(Get FASTA)	NCBI Sequence Viewer
	KAG3265803	(Get FASTA)	NCBI Sequence Viewer
	KAG3265804	(Get FASTA)	NCBI Sequence Viewer
	KAG3265805	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005333250 ⟸ XM_005333193
- Peptide Label:	isoform X4
- UniProtKB:	A0A287D4V0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELA GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAII TPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPADGFTILSTKSLFL GQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGA AVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQ TAAQLILKAISNYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN hide sequence

RefSeq Acc Id:	XP_005333247 ⟸ XM_005333190
- Peptide Label:	isoform X2
- UniProtKB:	I3MNP9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELA GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAII TPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPADGFTILSTKSLFL GQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEV AGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGF PKQTAAQLILKAISNYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN hide sequence

RefSeq Acc Id:

XP_005333246 ⟸ XM_005333189

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELA
GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAII
TPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPADGFTILSTKSLF
LGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLE
VAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNG
FPKQTAAQLILKAISNYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN

hide sequence

RefSeq Acc Id:

XP_005333248 ⟸ XM_005333191

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELA
GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAII
TPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPADGFTILSTKSLF
LGQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAG
AAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPK
QTAAQLILKAISNYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN

hide sequence

Ensembl Acc Id:

ENSSTOP00000013316 ⟸ ENSSTOT00000014865

Ensembl Acc Id:

ENSSTOP00000027170 ⟸ ENSSTOT00000030252

Ensembl Acc Id:

ENSSTOP00000028554 ⟸ ENSSTOT00000038630

Protein Domains

Histone H2A C-terminal Histone H2A/H2B/H3 Macro

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000014864	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000014865.3	UniProtKB/TrEMBL
	ENSSTOT00000030252.1	UniProtKB/TrEMBL
	ENSSTOT00000038630.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.20.10	UniProtKB/TrEMBL
	3.40.220.10	UniProtKB/TrEMBL
InterPro	Core_histone_macro-H2A	UniProtKB/TrEMBL
	Histone-fold	UniProtKB/TrEMBL
	Histone_H2A	UniProtKB/TrEMBL
	Histone_H2A/H2B/H3	UniProtKB/TrEMBL
	Histone_H2A_C	UniProtKB/TrEMBL
	Macro_dom	UniProtKB/TrEMBL
	Macro_dom-like	UniProtKB/TrEMBL
	Macro_H2A	UniProtKB/TrEMBL
NCBI Gene	LOC101971629	ENTREZGENE
PANTHER	PTHR23430	UniProtKB/TrEMBL
Pfam	Histone	UniProtKB/TrEMBL
	Histone_H2A_C	UniProtKB/TrEMBL
	Macro	UniProtKB/TrEMBL
PIRSF	Core_histone_macro-H2A	UniProtKB/TrEMBL
PRINTS	HISTONEH2A	UniProtKB/TrEMBL
PROSITE	MACRO	UniProtKB/TrEMBL
SMART	A1pp	UniProtKB/TrEMBL
	H2A	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47113	UniProtKB/TrEMBL
	SSF52949	UniProtKB/TrEMBL
UniProt	A0A287D0Z4_ICTTR	UniProtKB/TrEMBL
	A0A287D4V0	ENTREZGENE, UniProtKB/TrEMBL
	I3MNP9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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