Atg2b (autophagy related 2B) - Rat Genome Database

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Gene: Atg2b (autophagy related 2B) Ictidomys tridecemlineatus
Analyze
Symbol: Atg2b
Name: autophagy related 2B
RGD ID: 12621693
Description: ENCODES a protein that exhibits lipid transfer activity (inferred); phosphatidylinositol-3-phosphate binding (inferred); protein-membrane adaptor activity (inferred); INVOLVED IN autophagosome assembly (inferred); autophagy (inferred); autophagy of mitochondrion (inferred); ASSOCIATED WITH acute myeloid leukemia (ortholog); essential thrombocythemia (ortholog); myelofibrosis (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: autophagy related 2B, transcript variant X1; autophagy-related protein 2 homolog B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086409,441,264 - 9,502,872 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936604584,480 - 641,183 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936604583,391 - 641,217 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Atg2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086409,441,264 - 9,502,872 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936604584,480 - 641,183 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936604583,391 - 641,217 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381496,279,195 - 96,363,341 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1496,279,195 - 96,363,341 (-)EnsemblGRCh38hg38GRCh38
GRCh371496,745,532 - 96,829,678 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361495,817,348 - 95,899,431 (-)NCBINCBI36Build 36hg18NCBI36
Build 341495,820,836 - 95,853,254NCBI
Celera1476,803,312 - 76,885,404 (-)NCBICelera
Cytogenetic Map14q32.2NCBI
HuRef1476,932,696 - 77,014,765 (-)NCBIHuRef
CHM1_11496,686,513 - 96,768,523 (-)NCBICHM1_1
T2T-CHM13v2.01490,510,437 - 90,594,937 (-)NCBIT2T-CHM13v2.0
Atg2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912105,579,798 - 105,651,554 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12105,582,395 - 105,651,470 (-)EnsemblGRCm39 Ensembl
GRCm3812105,613,539 - 105,685,297 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12105,616,136 - 105,685,211 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712106,851,749 - 106,923,451 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612106,017,186 - 106,047,879 (-)NCBIMGSCv36mm8
Celera12106,848,151 - 106,919,764 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1255.82NCBI
Atg2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86130,286,979 - 130,357,109 (-)NCBIGRCr8
mRatBN7.26124,522,283 - 124,592,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6124,525,523 - 124,592,015 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.06129,449,451 - 129,519,599 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6129,449,449 - 129,509,720 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06138,642,749 - 138,712,529 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46129,773,507 - 129,841,598 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16129,778,695 - 129,803,238 (-)NCBI
Celera6122,089,232 - 122,159,479 (-)NCBICelera
Cytogenetic Map6q32NCBI
Atg2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543818,078,685 - 18,153,098 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543818,080,641 - 18,153,490 (-)NCBIChiLan1.0ChiLan1.0
ATG2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21597,441,258 - 97,523,352 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11496,657,763 - 96,739,856 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01476,910,943 - 76,992,969 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11496,233,322 - 96,314,881 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1496,237,825 - 96,314,881 (-)Ensemblpanpan1.1panPan2
ATG2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1865,039,960 - 65,110,811 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl865,044,194 - 65,110,796 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha864,555,847 - 64,626,693 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0865,311,353 - 65,382,558 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl865,314,912 - 65,382,482 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1864,984,413 - 65,055,244 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0865,045,745 - 65,116,666 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0865,369,420 - 65,440,283 (-)NCBIUU_Cfam_GSD_1.0
ATG2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7117,506,302 - 117,586,545 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17117,506,298 - 117,586,651 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27124,763,437 - 124,844,551 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATG2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12474,163,750 - 74,246,131 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2474,163,442 - 74,246,116 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605361,314,998 - 61,397,385 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247347,015,672 - 7,096,348 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247347,015,356 - 7,097,392 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000016134   ⟹   ENSSTOP00000014442
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936604584,480 - 641,183 (-)Ensembl
RefSeq Acc Id: XM_021732072   ⟹   XP_021587747
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086409,441,265 - 9,502,872 (+)NCBI
SpeTri2.0NW_004936604583,391 - 641,217 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040276368   ⟹   XP_040132302
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086409,441,265 - 9,502,872 (+)NCBI
RefSeq Acc Id: XM_040276369   ⟹   XP_040132303
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086409,441,265 - 9,502,872 (+)NCBI
RefSeq Acc Id: XR_002484859
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086409,441,264 - 9,490,010 (+)NCBI
SpeTri2.0NW_004936604593,160 - 641,217 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021587747 (Get FASTA)   NCBI Sequence Viewer  
  XP_040132302 (Get FASTA)   NCBI Sequence Viewer  
  XP_040132303 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014442.3
GenBank Protein KAG3260416 (Get FASTA)   NCBI Sequence Viewer  
  KAG3260417 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021587747   ⟸   XM_021732072
- Peptide Label: isoform X1
- UniProtKB: I3MQZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040132302   ⟸   XM_040276368
- Peptide Label: isoform X2
- UniProtKB: I3MQZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040132303   ⟸   XM_040276369
- Peptide Label: isoform X3
- UniProtKB: I3MQZ2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000014442   ⟸   ENSSTOT00000016134

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016131 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016134.3 UniProtKB/TrEMBL
InterPro ATG2 UniProtKB/TrEMBL
  ATG2_mid_RBG UniProtKB/TrEMBL
  Autophagy-rel_C UniProtKB/TrEMBL
  VPS13-like_N UniProtKB/TrEMBL
NCBI Gene Atg2b ENTREZGENE
PANTHER AUTOPHAGY-RELATED PROTEIN 2 HOMOLOG B UniProtKB/TrEMBL
  PTHR13190 UniProtKB/TrEMBL
Pfam ATG2_CAD UniProtKB/TrEMBL
  ATG_C UniProtKB/TrEMBL
  Chorein_N UniProtKB/TrEMBL
UniProt I3MQZ2 ENTREZGENE, UniProtKB/TrEMBL