LOC101959620 (disintegrin and metalloproteinase domain-containing protein 29-like) - Rat Genome Database

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Gene: LOC101959620 (disintegrin and metalloproteinase domain-containing protein 29-like) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101959620 (Ensembl: ADAM29)
Name: disintegrin and metalloproteinase domain-containing protein 29-like (Ensembl:ADAM metallopeptidase domain 29)
RGD ID: 12607171
Description: ENCODES a protein that exhibits metal ion binding (inferred); metalloendopeptidase activity (inferred); INVOLVED IN male gonad development (inferred); proteolysis (inferred); FOUND IN external side of plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494325,488,747 - 25,515,995 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365165,927,900 - 5,930,256 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365165,927,900 - 5,930,263 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000022462   ⟹   ENSSTOP00000022118
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365165,927,900 - 5,930,256 (+)Ensembl
RefSeq Acc Id: XM_005325542   ⟹   XP_005325599
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494325,488,758 - 25,515,995 (+)NCBI
SpeTri2.0NW_0049365165,927,900 - 5,930,263 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040293951   ⟹   XP_040149885
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494325,488,747 - 25,515,995 (+)NCBI
RefSeq Acc Id: XM_040293959   ⟹   XP_040149893
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494325,512,673 - 25,515,995 (+)NCBI
RefSeq Acc Id: XR_005737839
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494325,488,747 - 25,515,851 (+)NCBI
RefSeq Acc Id: XR_005737840
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494325,488,747 - 25,515,854 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005325599 (Get FASTA)   NCBI Sequence Viewer  
  XP_040149885 (Get FASTA)   NCBI Sequence Viewer  
  XP_040149893 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022118.2
GenBank Protein KAG3294527 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005325599   ⟸   XM_005325542
- UniProtKB: I3NCM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040149885   ⟸   XM_040293951
- UniProtKB: I3NCM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149893   ⟸   XM_040293959
- UniProtKB: I3NCM1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000022118   ⟸   ENSSTOT00000022462
Protein Domains
Disintegrin   Peptidase M12B


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025632 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022462.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.390.10 UniProtKB/TrEMBL
  4.10.70.10 UniProtKB/TrEMBL
InterPro ADAM_Cys-rich UniProtKB/TrEMBL
  Disintegrin_CS UniProtKB/TrEMBL
  Disintegrin_dom UniProtKB/TrEMBL
  Disintegrin_dom_sf UniProtKB/TrEMBL
  MetalloPept_cat_dom_sf UniProtKB/TrEMBL
  Peptidase_M12B UniProtKB/TrEMBL
  Peptidase_M12B_N UniProtKB/TrEMBL
  Reprolysin_adamalysin UniProtKB/TrEMBL
NCBI Gene LOC101959620 ENTREZGENE
PANTHER ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN UniProtKB/TrEMBL
  DISINTEGRIN AND METALLOPROTEINASE DOMAIN-CONTAINING PROTEIN 29 UniProtKB/TrEMBL
Pfam ADAM_CR UniProtKB/TrEMBL
  Disintegrin UniProtKB/TrEMBL
  Pep_M12B_propep UniProtKB/TrEMBL
  Reprolysin UniProtKB/TrEMBL
PRINTS DISINTEGRIN UniProtKB/TrEMBL
PROSITE ADAM_MEPRO UniProtKB/TrEMBL
  DISINTEGRIN_1 UniProtKB/TrEMBL
  DISINTEGRIN_2 UniProtKB/TrEMBL
SMART ACR UniProtKB/TrEMBL
  DISIN UniProtKB/TrEMBL
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/TrEMBL
  SSF57552 UniProtKB/TrEMBL
UniProt I3NCM1 ENTREZGENE, UniProtKB/TrEMBL