Thra (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405602 | 21,869,085 - 21,886,778 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936490 | 15,193,150 - 15,206,784 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936490 | 15,188,341 - 15,206,032 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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THRA (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 17 | 40,062,193 - 40,093,867 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 17 | 40,058,290 - 40,093,867 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 17 | 38,218,446 - 38,250,120 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 17 | 35,472,589 - 35,503,646 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 17 | 35,472,588 - 35,499,815 | NCBI | | | | | Celera | 17 | 34,878,512 - 34,910,230 (+) | NCBI | | Celera | | | Cytogenetic Map | 17 | q21.1 | NCBI | | | | | HuRef | 17 | 34,012,227 - 34,043,856 (+) | NCBI | | HuRef | | | CHM1_1 | 17 | 38,454,163 - 38,485,823 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 17 | 40,926,078 - 40,957,752 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Thra (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 11 | 98,631,539 - 98,659,832 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 11 | 98,631,464 - 98,659,832 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 11 | 98,740,776 - 98,769,006 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 11 | 98,740,638 - 98,769,006 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 11 | 98,603,187 - 98,626,425 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 11 | 98,557,963 - 98,581,201 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 11 | 108,407,991 - 108,419,811 (+) | NCBI | | Celera | | | Cytogenetic Map | 11 | D | NCBI | | | | | cM Map | 11 | 62.58 | NCBI | | | | |
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Thra (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 10 | 84,198,141 - 84,225,659 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 10 | 83,701,885 - 83,729,408 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 10 | 83,700,755 - 83,729,936 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 10 | 88,645,759 - 88,673,285 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 10 | 88,143,834 - 88,171,360 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 10 | 83,536,535 - 83,564,061 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 10 | 86,657,285 - 86,684,935 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 10 | 86,657,285 - 86,684,933 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 10 | 86,453,436 - 86,480,928 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 10 | 87,514,443 - 87,542,306 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 10 | 87,540,629 - 87,556,674 (+) | NCBI | | | | | Celera | 10 | 82,449,971 - 82,477,615 (+) | NCBI | | Celera | | | RH 3.4 Map | 10 | 839.79 | RGD | | | | | Cytogenetic Map | 10 | q31 | NCBI | | | | |
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Thra (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955451 | 14,731,746 - 14,744,367 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955451 | 14,731,746 - 14,743,545 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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THRA (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 19 | 24,861,063 - 24,892,111 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 17 | 26,755,863 - 26,786,898 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 17 | 17,196,459 - 17,226,263 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 17 | 17,420,186 - 17,448,502 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | |
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THRA (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 9 | 22,469,466 - 22,493,445 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 9 | 22,468,594 - 22,493,445 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 9 | 21,941,798 - 21,965,472 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 9 | 23,262,655 - 23,286,090 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 9 | 23,261,287 - 23,285,973 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 9 | 22,036,085 - 22,059,532 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 9 | 22,295,080 - 22,318,722 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 9 | 22,419,817 - 22,443,287 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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THRA (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 12 | 22,270,062 - 22,296,618 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 12 | 22,270,506 - 22,296,684 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 12 | 22,488,984 - 22,497,735 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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THRA (Chlorocebus sabaeus - green monkey) |
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Thra (Heterocephalus glaber - naked mole-rat) |
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