Idh3b (isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta) - Rat Genome Database

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Gene: Idh3b (isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta) Ictidomys tridecemlineatus
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Symbol: Idh3b
Name: isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta
RGD ID: 12582302
Description: ENCODES a protein that exhibits enzyme activator activity (ortholog); INVOLVED IN isocitrate metabolic process (inferred); tricarboxylic acid cycle (inferred); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; mitochondrial complex II deficiency pathway; ASSOCIATED WITH Disease Progression (ortholog); fundus dystrophy (ortholog); Huntington's disease-like 1 (ortholog); FOUND IN isocitrate dehydrogenase complex (NAD+) (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: isocitrate dehydrogenase (NAD(+)) 3 beta; isocitrate dehydrogenase 3 (NAD(+)) beta; isocitrate dehydrogenase 3 (NAD(+)) beta, transcript variant X1; isocitrate dehydrogenase 3 (NAD(+)) beta, transcript variant X2; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640167,601,899 - 167,606,729 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648516,033,128 - 16,042,821 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648516,033,287 - 16,038,097 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Idh3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640167,601,899 - 167,606,729 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648516,033,128 - 16,042,821 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648516,033,287 - 16,038,097 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IDH3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38202,658,395 - 2,664,216 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl202,658,393 - 2,664,219 (-)EnsemblGRCh38hg38GRCh38
GRCh37202,639,041 - 2,644,862 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36202,587,041 - 2,592,843 (-)NCBINCBI36Build 36hg18NCBI36
Build 34202,587,042 - 2,592,843NCBI
Celera202,703,504 - 2,709,306 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef202,588,269 - 2,594,156 (-)NCBIHuRef
CHM1_1202,639,448 - 2,645,272 (-)NCBICHM1_1
T2T-CHM13v2.0202,688,862 - 2,694,697 (-)NCBIT2T-CHM13v2.0
Idh3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,121,229 - 130,126,371 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,121,229 - 130,126,467 (-)EnsemblGRCm39 Ensembl
GRCm382130,279,309 - 130,284,451 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,279,309 - 130,284,547 (-)EnsemblGRCm38mm10GRCm38
MGSCv372130,105,045 - 130,110,187 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362129,970,753 - 129,983,751 (-)NCBIMGSCv36mm8
Celera2131,503,716 - 131,508,858 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.2NCBI
Idh3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83137,934,971 - 137,940,275 (-)NCBIGRCr8
mRatBN7.23117,481,845 - 117,486,909 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,481,845 - 117,486,982 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3121,379,896 - 121,384,925 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03129,975,515 - 129,980,544 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03127,636,012 - 127,641,041 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03122,808,564 - 122,813,638 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3122,808,564 - 122,813,583 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03129,308,279 - 129,313,315 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43117,892,614 - 117,897,633 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13117,798,468 - 117,800,065 (-)NCBI
Celera3116,298,150 - 116,303,169 (-)NCBICelera
Cytogenetic Map3q36NCBI
Idh3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541513,643,168 - 13,649,463 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541513,642,804 - 13,649,023 (-)NCBIChiLan1.0ChiLan1.0
IDH3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2213,647,477 - 3,677,553 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1203,644,302 - 3,674,378 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0202,766,598 - 2,772,571 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1202,529,510 - 2,559,894 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl202,529,510 - 2,535,570 (-)Ensemblpanpan1.1panPan2
IDH3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12418,556,437 - 18,561,399 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2418,556,508 - 18,561,391 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2418,385,740 - 18,390,707 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02419,014,265 - 19,019,181 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2419,014,285 - 19,019,174 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,570,449 - 18,575,416 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02418,680,753 - 18,685,668 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02419,009,851 - 19,014,767 (+)NCBIUU_Cfam_GSD_1.0
IDH3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1732,955,101 - 32,960,104 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11732,955,061 - 32,960,110 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21737,446,330 - 37,451,309 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IDH3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,875,991 - 53,882,069 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,875,390 - 53,881,716 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666087292,746 - 299,180 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Idh3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247413,808,784 - 3,814,510 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247413,808,436 - 3,814,239 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000012516   ⟹   ENSSTOP00000011217
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648516,033,128 - 16,042,821 (+)Ensembl
RefSeq Acc Id: XM_005320546   ⟹   XP_005320603
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640167,601,899 - 167,606,729 (+)NCBI
SpeTri2.0NW_00493648516,033,288 - 16,038,097 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005320547   ⟹   XP_005320604
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640167,601,899 - 167,606,729 (+)NCBI
SpeTri2.0NW_00493648516,033,287 - 16,038,097 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005729093
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640167,601,899 - 167,606,729 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005320603 (Get FASTA)   NCBI Sequence Viewer  
  XP_005320604 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011217.3
GenBank Protein KAG3262953 (Get FASTA)   NCBI Sequence Viewer  
  KAG3262954 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005320604   ⟸   XM_005320547
- Peptide Label: isoform X2
- UniProtKB: I3MJB0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005320603   ⟸   XM_005320546
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSSTOP00000011217   ⟸   ENSSTOT00000012516

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012515 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012516.3 UniProtKB/TrEMBL
Gene3D-CATH Isopropylmalate Dehydrogenase UniProtKB/TrEMBL
InterPro IsoCit/isopropylmalate_DH_CS UniProtKB/TrEMBL
  Isocitrate_DH_NAD UniProtKB/TrEMBL
  IsoPropMal-DH-like_dom UniProtKB/TrEMBL
NCBI Gene Idh3b ENTREZGENE
PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE UniProtKB/TrEMBL
  ISOCITRATE DEHYDROGENASE [NAD] SUBUNIT BETA, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Iso_dh UniProtKB/TrEMBL
PROSITE IDH_IMDH UniProtKB/TrEMBL
SMART Iso_dh UniProtKB/TrEMBL
Superfamily-SCOP Isocitrate/Isopropylmalate dehydrogenase-like UniProtKB/TrEMBL
UniProt I3MJB0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-16 Idh3b  isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta  Idh3b  isocitrate dehydrogenase (NAD(+)) 3 beta  Symbol and/or name change 5135510 APPROVED
2019-04-16 Idh3b  isocitrate dehydrogenase (NAD(+)) 3 beta    isocitrate dehydrogenase 3 (NAD(+)) beta  Symbol and/or name change 5135510 APPROVED