Idh3g (isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma) - Rat Genome Database

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Gene: Idh3g (isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma) Ictidomys tridecemlineatus
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Symbol: Idh3g
Name: isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma
RGD ID: 12579352
Description: ENCODES a protein that exhibits enzyme activator activity (ortholog); isocitrate dehydrogenase (NAD+) activity (ortholog); INVOLVED IN isocitrate metabolic process (inferred); tricarboxylic acid cycle (inferred); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; mitochondrial complex II deficiency pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN isocitrate dehydrogenase complex (NAD+) (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: isocitrate dehydrogenase (NAD(+)) 3 gamma; isocitrate dehydrogenase 3 (NAD(+)) gamma; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,928,456 - 118,937,516 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809666,337 - 675,214 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809666,231 - 675,279 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Idh3g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,928,456 - 118,937,516 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809666,337 - 675,214 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809666,231 - 675,279 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IDH3G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X153,785,768 - 153,794,375 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX153,785,766 - 153,794,512 (-)EnsemblGRCh38hg38GRCh38
GRCh37X153,051,223 - 153,059,830 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X152,704,415 - 152,713,161 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X152,572,067 - 152,580,814NCBI
CeleraX153,284,902 - 153,293,648 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX141,708,249 - 141,717,006 (-)NCBIHuRef
CHM1_1X152,925,630 - 152,934,387 (-)NCBICHM1_1
T2T-CHM13v2.0X152,059,431 - 152,068,038 (-)NCBIT2T-CHM13v2.0
Idh3g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,822,569 - 72,830,471 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,822,569 - 72,830,503 (-)EnsemblGRCm39 Ensembl
GRCm38X73,778,963 - 73,786,897 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,778,963 - 73,786,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X71,024,302 - 71,032,236 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,031,683 - 70,039,617 (-)NCBIMGSCv36mm8
CeleraX65,031,236 - 65,039,170 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.41NCBI
Idh3g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X156,666,573 - 156,675,482 (-)NCBIGRCr8
mRatBN7.2X151,515,244 - 151,524,175 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,515,247 - 151,524,171 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX153,656,414 - 153,665,320 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,219,644 - 157,228,550 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,891,468 - 154,900,374 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,999,803 - 157,008,735 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,999,826 - 157,008,733 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,747,878 - 152,757,622 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,701,345 - 159,710,254 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X159,776,446 - 159,785,611 (-)NCBI
Celera1136,365,515 - 136,374,301 (+)NCBICelera
Cytogenetic MapXq37NCBI
Idh3g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580500,825 - 507,608 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955580500,712 - 507,512 (-)NCBIChiLan1.0ChiLan1.0
IDH3G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X153,826,443 - 153,835,135 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X153,830,046 - 153,838,677 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,336,460 - 143,345,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,222,309 - 153,231,135 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,222,309 - 153,231,135 (-)Ensemblpanpan1.1panPan2
IDH3G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,599,368 - 121,608,707 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,599,368 - 121,608,643 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,928,530 - 106,937,871 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,740,839 - 124,750,181 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,740,831 - 124,750,153 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,510,113 - 120,519,453 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,025,113 - 123,034,451 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,787,308 - 122,796,645 (-)NCBIUU_Cfam_GSD_1.0
IDH3G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,528,585 - 124,537,575 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,528,643 - 124,537,570 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X142,093,229 - 142,102,047 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IDH3G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,212,660 - 128,221,637 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606566,079,983 - 66,088,967 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Idh3g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946461,780 - 472,336 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946465,832 - 472,259 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005340607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000008262   ⟹   ENSSTOP00000007402
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936809666,337 - 675,214 (-)Ensembl
RefSeq Acc Id: XM_005340607   ⟹   XP_005340664
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X118,928,456 - 118,937,516 (-)NCBI
SpeTri2.0NW_004936809666,231 - 675,279 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005340664 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007402.2
GenBank Protein KAG3273195 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005340664   ⟸   XM_005340607
- UniProtKB: I3MBB2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000007402   ⟸   ENSSTOT00000008262

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008261 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008262.3 UniProtKB/TrEMBL
Gene3D-CATH Isopropylmalate Dehydrogenase UniProtKB/TrEMBL
InterPro IsoCit/isopropylmalate_DH_CS UniProtKB/TrEMBL
  Isocitrate_DH_NAD UniProtKB/TrEMBL
  IsoPropMal-DH-like_dom UniProtKB/TrEMBL
NCBI Gene Idh3g ENTREZGENE
PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE UniProtKB/TrEMBL
  ISOCITRATE DEHYDROGENASE [NAD] SUBUNIT GAMMA, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Iso_dh UniProtKB/TrEMBL
PROSITE IDH_IMDH UniProtKB/TrEMBL
SMART Iso_dh UniProtKB/TrEMBL
Superfamily-SCOP Isocitrate/Isopropylmalate dehydrogenase-like UniProtKB/TrEMBL
UniProt I3MBB2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-16 Idh3g  isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma  Idh3g  isocitrate dehydrogenase (NAD(+)) 3 gamma  Symbol and/or name change 5135510 APPROVED
2019-04-16 Idh3g  isocitrate dehydrogenase (NAD(+)) 3 gamma    isocitrate dehydrogenase 3 (NAD(+)) gamma  Symbol and/or name change 5135510 APPROVED