Atg9a (autophagy related 9A) - Rat Genome Database

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Gene: Atg9a (autophagy related 9A) Ictidomys tridecemlineatus
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Symbol: Atg9a
Name: autophagy related 9A
RGD ID: 12551775
Description: ENCODES a protein that exhibits phospholipid scramblase activity (inferred); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); bone morphogenesis (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); myofibrillar myopathy 1 (ortholog); FOUND IN autophagosome membrane (ortholog); cytoplasm (ortholog); late endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: autophagy related 9A, transcript variant X1; autophagy related 9A, transcript variant X2; autophagy related 9A, transcript variant X3; autophagy related 9A, transcript variant X4; autophagy related 9A, transcript variant X5; autophagy related 9A, transcript variant X6; autophagy related 9A, transcript variant X7; autophagy related 9A, transcript variant X8; autophagy related 9A, transcript variant X9; autophagy-related protein 9A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,293,177 - 175,302,830 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,635,836 - 1,645,815 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,635,958 - 1,645,600 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Atg9a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,293,177 - 175,302,830 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,635,836 - 1,645,815 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,635,958 - 1,645,600 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG9A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,219,380 - 219,229,636 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,219,380 - 219,229,717 (-)EnsemblGRCh38hg38GRCh38
GRCh372220,084,102 - 220,094,358 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,792,346 - 219,802,605 (-)NCBINCBI36Build 36hg18NCBI36
Build 342219,909,606 - 219,919,835NCBI
Celera2213,853,809 - 213,864,068 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,937,399 - 211,947,519 (-)NCBIHuRef
CHM1_12220,089,938 - 220,100,197 (-)NCBICHM1_1
T2T-CHM13v2.02219,704,146 - 219,714,401 (-)NCBIT2T-CHM13v2.0
Atg9a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,157,509 - 75,168,654 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl175,157,504 - 75,168,840 (-)EnsemblGRCm39 Ensembl
GRCm38175,180,861 - 75,192,010 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,180,860 - 75,192,196 (-)EnsemblGRCm38mm10GRCm38
MGSCv37175,177,440 - 75,188,497 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,064,012 - 75,075,343 (-)NCBIMGSCv36mm8
Celera175,671,723 - 75,682,810 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.62NCBI
Atg9a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8984,126,071 - 84,136,723 (-)NCBIGRCr8
mRatBN7.2976,677,403 - 76,688,050 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,677,404 - 76,687,986 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx985,121,980 - 85,132,633 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0990,250,871 - 90,261,524 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,637,084 - 88,647,737 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,382,800 - 82,393,429 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,382,800 - 82,393,382 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0982,152,061 - 82,162,660 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,463,655 - 74,474,286 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,610,636 - 74,621,268 (-)NCBI
Celera974,247,853 - 74,258,401 (-)NCBICelera
Cytogenetic Map9q33NCBI
Atg9a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,206,065 - 14,213,729 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,203,798 - 14,214,760 (+)NCBIChiLan1.0ChiLan1.0
ATG9A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,849,883 - 121,860,282 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,864,848 - 121,875,247 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,477,007 - 106,487,249 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B225,067,959 - 225,078,272 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B225,067,590 - 225,078,065 (-)Ensemblpanpan1.1panPan2
ATG9A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,768,287 - 25,777,529 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,768,275 - 25,890,811 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,594,184 - 26,603,430 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,783,514 - 25,792,755 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,783,514 - 25,792,506 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,687,927 - 25,697,172 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,623,048 - 25,632,281 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,643,892 - 25,653,138 (-)NCBIUU_Cfam_GSD_1.0
ATG9A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15121,254,355 - 121,265,569 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115121,254,355 - 121,265,564 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215134,289,150 - 134,300,499 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATG9A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110105,123,039 - 105,133,057 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10105,124,412 - 105,131,409 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,263,211 - 94,273,258 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg9a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248235,787,601 - 5,797,534 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248235,787,525 - 5,797,536 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000019458   ⟹   ENSSTOP00000021697
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365691,635,836 - 1,645,815 (-)Ensembl
RefSeq Acc Id: XM_005330500   ⟹   XP_005330557
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,293,177 - 175,302,829 (-)NCBI
SpeTri2.0NW_0049365691,635,958 - 1,645,600 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013360859   ⟹   XP_013216313
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,293,177 - 175,302,829 (-)NCBI
SpeTri2.0NW_0049365691,635,958 - 1,645,600 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013360860   ⟹   XP_013216314
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,293,177 - 175,302,829 (-)NCBI
SpeTri2.0NW_0049365691,635,958 - 1,645,600 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013360861   ⟹   XP_013216315
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,293,177 - 175,302,829 (-)NCBI
SpeTri2.0NW_0049365691,635,958 - 1,645,600 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013360862   ⟹   XP_013216316
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,293,177 - 175,302,830 (-)NCBI
SpeTri2.0NW_0049365691,635,958 - 1,645,600 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013360864   ⟹   XP_013216318
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,293,177 - 175,302,830 (-)NCBI
SpeTri2.0NW_0049365691,635,958 - 1,645,600 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021729960   ⟹   XP_021585635
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,293,177 - 175,302,557 (-)NCBI
SpeTri2.0NW_0049365691,635,958 - 1,645,328 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021729961   ⟹   XP_021585636
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,293,177 - 175,301,250 (-)NCBI
SpeTri2.0NW_0049365691,635,958 - 1,643,823 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040267865   ⟹   XP_040123799
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,293,177 - 175,302,557 (-)NCBI
RefSeq Acc Id: XP_005330557   ⟸   XM_005330500
- Peptide Label: isoform X1
- UniProtKB: I3NBF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013216313   ⟸   XM_013360859
- Peptide Label: isoform X1
- UniProtKB: I3NBF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013216316   ⟸   XM_013360862
- Peptide Label: isoform X1
- UniProtKB: I3NBF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013216318   ⟸   XM_013360864
- Peptide Label: isoform X1
- UniProtKB: I3NBF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013216315   ⟸   XM_013360861
- Peptide Label: isoform X1
- UniProtKB: I3NBF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013216314   ⟸   XM_013360860
- Peptide Label: isoform X1
- UniProtKB: I3NBF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021585635   ⟸   XM_021729960
- Peptide Label: isoform X1
- UniProtKB: I3NBF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021585636   ⟸   XM_021729961
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040123799   ⟸   XM_040267865
- Peptide Label: isoform X1
- UniProtKB: I3NBF0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000021697   ⟸   ENSSTOT00000019458


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023078 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000019458.2 UniProtKB/TrEMBL
InterPro Autophagy-rel_prot_9 UniProtKB/TrEMBL
NCBI Gene Atg9a ENTREZGENE
PANTHER AUTOPHAGY-RELATED PROTEIN 9A UniProtKB/TrEMBL
  PTHR13038 UniProtKB/TrEMBL
Pfam APG9 UniProtKB/TrEMBL
UniProt I3NBF0 ENTREZGENE, UniProtKB/TrEMBL