Bax (BCL2 associated X, apoptosis regulator) - Rat Genome Database

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Gene: Bax (BCL2 associated X, apoptosis regulator) Ictidomys tridecemlineatus
Analyze
Symbol: Bax
Name: BCL2 associated X, apoptosis regulator
RGD ID: 12551199
Description: ENCODES a protein that exhibits BH domain binding (ortholog); heat shock protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN apoptotic process (ortholog); apoptotic signaling pathway (ortholog); B cell apoptotic process (ortholog); PARTICIPATES IN ceramide signaling pathway; intrinsic apoptotic pathway; syndecan signaling pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome 1 (ortholog); acute kidney failure (ortholog); Acute Lung Injury (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: apoptosis regulator BAX; BCL2 associated X, apoptosis regulator, transcript variant X1; BCL2 associated X, apoptosis regulator, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,349,880 - 21,355,462 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366642,967,865 - 2,973,820 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366642,968,103 - 2,973,652 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
abdominal obesity-metabolic syndrome 1  (ISO)
acute kidney failure  (ISO)
Acute Lung Injury  (ISO)
acute lymphoblastic leukemia  (ISO)
acute myocardial infarction  (ISO)
Adrenal Insufficiency  (ISO)
Alzheimer's disease  (ISO)
amyotrophic lateral sclerosis  (ISO)
anti-basement membrane glomerulonephritis  (ISO)
ataxia telangiectasia  (ISO)
brain glioma  (ISO)
Brain Hypoxia-Ischemia  (ISO)
Brain Injuries  (ISO)
breast cancer  (ISO)
Breast Neoplasms  (ISO)
bronchopulmonary dysplasia  (ISO)
Burns  (ISO)
Cerebral Hemorrhage  (ISO)
cervical squamous cell carcinoma  (ISO)
Chemical and Drug Induced Liver Injury  (ISO)
Chronic Intermittent Hypoxia  (ISO)
clear cell renal cell carcinoma  (ISO)
colon adenocarcinoma  (ISO)
colon carcinoma  (ISO)
Colonic Neoplasms  (ISO)
colorectal cancer  (ISO)
Colorectal Neoplasms  (ISO)
congestive heart failure  (ISO)
dementia  (ISO)
depressive disorder  (ISO)
Diabetic Cardiomyopathies  (ISO)
dilated cardiomyopathy  (ISO)
endometriosis  (ISO)
Endotoxemia  (ISO)
Esophageal Neoplasms  (ISO)
Experimental Arthritis  (ISO)
Experimental Diabetes Mellitus  (ISO)
Experimental Mammary Neoplasms  (ISO)
Fetal Growth Retardation  (ISO)
Gastrointestinal Hemorrhage  (ISO)
genetic disease  (ISO)
glaucoma  (ISO)
heart disease  (ISO)
hepatocellular carcinoma  (ISO)
human immunodeficiency virus infectious disease  (ISO)
Huntington's disease  (ISO)
Hyperplasia  (ISO)
hypertension  (ISO)
impotence  (ISO)
intermittent claudication  (ISO)
intestinal disease  (ISO)
Intestinal Neoplasms  (ISO)
ischemia  (ISO)
Kashin-Beck Disease  (ISO)
Kidney Reperfusion Injury  (ISO)
Knee Osteoarthritis  (ISO)
leiomyoma  (ISO)
Liver Reperfusion Injury  (ISO)
Lung Injury  (ISO)
lung non-small cell carcinoma  (ISO)
Lung Reperfusion Injury  (ISO)
macular degeneration  (ISO)
male infertility  (ISO)
Microsatellite Instability  (ISO)
middle cerebral artery infarction  (ISO)
morphine dependence  (ISO)
Multi-Infarct Dementia  (ISO)
myocardial infarction  (ISO)
Myocardial Ischemia  (ISO)
Myocardial Reperfusion Injury  (ISO)
Neoplasm Metastasis  (ISO)
Nerve Degeneration  (ISO)
Optic Nerve Injuries  (ISO)
osteoarthritis  (ISO)
osteoporosis  (ISO)
polycystic ovary syndrome  (ISO)
post-traumatic stress disorder  (ISO)
Postoperative Cognitive Dysfunction  (ISO)
pre-malignant neoplasm  (ISO)
Premature Aging  (ISO)
primary cutaneous T-cell non-Hodgkin lymphoma  (ISO)
prion disease  (ISO)
prostate cancer  (ISO)
prostate carcinoma  (ISO)
Prostatic Neoplasms  (ISO)
Reperfusion Injury  (ISO)
Retina Reperfusion Injury  (ISO)
retinal degeneration  (ISO)
rheumatic heart disease  (ISO)
Right Ventricular Hypertrophy  (ISO)
Sarcopenia  (ISO)
scrapie  (ISO)
Spinal Cord Injuries  (ISO)
status epilepticus  (ISO)
stomach cancer  (ISO)
T-cell acute lymphoblastic leukemia  (ISO)
teratoma  (ISO)
Testis Reperfusion Injury  (ISO)
thyroiditis  (ISO)
toxoplasmosis  (ISO)
transient cerebral ischemia  (ISO)
Transplant Rejection  (ISO)
type 2 diabetes mellitus  (ISO)
urinary bladder cancer  (ISO)
Ventricular Remodeling  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic mitochondrial changes  (IEA)
apoptotic process  (IEA,ISO)
apoptotic process involved in blood vessel morphogenesis  (IEA)
apoptotic process involved in embryonic digit morphogenesis  (IEA)
apoptotic process involved in mammary gland involution  (IEA)
apoptotic signaling pathway  (IEA,ISO)
B cell apoptotic process  (IEA,ISO)
B cell homeostasis  (IEA)
B cell homeostatic proliferation  (IEA)
B cell negative selection  (IEA)
B cell receptor apoptotic signaling pathway  (IEA)
blood vessel remodeling  (IEA)
calcium ion transport into cytosol  (IEA)
cell population proliferation  (IEA)
cellular respiration  (ISO)
cellular response to hydrogen peroxide  (ISO)
cellular response to UV  (IEA)
cellular response to virus  (IEA)
cerebral cortex development  (IEA,ISO)
development of secondary sexual characteristics  (IEA)
DNA damage response  (IEA)
ectopic germ cell programmed cell death  (IEA,ISO)
epithelial cell apoptotic process  (IEA)
epithelial cell proliferation  (IEA)
establishment of localization in cell  (IEA)
establishment or maintenance of transmembrane electrochemical gradient  (IEA)
execution phase of apoptosis  (IEA)
extrinsic apoptotic signaling pathway  (IEA)
extrinsic apoptotic signaling pathway in absence of ligand  (IEA)
extrinsic apoptotic signaling pathway via death domain receptors  (IEA)
fertilization  (IEA)
germ cell development  (IEA)
glial cell apoptotic process  (ISO)
glycosphingolipid metabolic process  (IEA)
homeostasis of number of cells  (IEA)
homeostasis of number of cells within a tissue  (IEA)
hypothalamus development  (IEA)
inner mitochondrial membrane organization  (ISO)
intrinsic apoptotic signaling pathway  (IEA)
intrinsic apoptotic signaling pathway by p53 class mediator  (IEA)
intrinsic apoptotic signaling pathway in response to DNA damage  (IEA)
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress  (IEA)
kidney development  (IEA)
leukocyte homeostasis  (IEA)
limb morphogenesis  (IEA)
male gonad development  (IEA)
mitochondrial fragmentation involved in apoptotic process  (IEA)
mitochondrial fusion  (IEA)
mitochondrion organization  (IEA)
motor neuron apoptotic process  (IEA,ISO)
myeloid cell homeostasis  (IEA)
negative regulation of apoptotic signaling pathway  (IEA)
negative regulation of cell population proliferation  (IEA)
negative regulation of endoplasmic reticulum calcium ion concentration  (IEA)
negative regulation of fibroblast proliferation  (IEA)
negative regulation of mitochondrial membrane potential  (IEA)
negative regulation of neuron apoptotic process  (IEA)
negative regulation of peptidyl-serine phosphorylation  (ISO)
nervous system development  (IEA)
neuron apoptotic process  (IEA,ISO)
neuron migration  (IEA)
odontogenesis of dentin-containing tooth  (IEA)
outer mitochondrial membrane organization  (ISO)
ovarian follicle development  (IEA,ISO)
peptidyl-serine phosphorylation  (ISO)
positive regulation of apoptotic DNA fragmentation  (IEA)
positive regulation of apoptotic process  (IEA,ISO)
positive regulation of apoptotic process involved in mammary gland involution  (IEA)
positive regulation of B cell apoptotic process  (IEA)
positive regulation of calcium ion transport into cytosol  (IEA)
positive regulation of developmental pigmentation  (IEA)
positive regulation of developmental process  (IEA)
positive regulation of epithelial cell apoptotic process  (IEA)
positive regulation of intrinsic apoptotic signaling pathway  (IEA)
positive regulation of mitochondrial membrane permeability involved in apoptotic process  (IEA)
positive regulation of motor neuron apoptotic process  (IEA)
positive regulation of neuron apoptotic process  (IEA)
positive regulation of protein-containing complex assembly  (IEA)
positive regulation of release of cytochrome c from mitochondria  (IEA)
positive regulation of release of sequestered calcium ion into cytosol  (IEA)
positive regulation of reproductive process  (IEA)
post-embryonic camera-type eye morphogenesis  (IEA)
post-embryonic development  (IEA)
protein insertion into mitochondrial membrane  (IEA)
regulation of apoptotic process  (IEA)
regulation of cell cycle  (IEA)
regulation of mammary gland epithelial cell proliferation  (IEA)
regulation of mitochondrial membrane permeability involved in apoptotic process  (IEA)
regulation of mitochondrial membrane permeability involved in programmed necrotic cell death  (IEA)
regulation of mitochondrial membrane potential  (IEA,ISO)
regulation of neuron apoptotic process  (IEA,ISO)
regulation of nitrogen utilization  (IEA)
release of cytochrome c from mitochondria  (IEA,ISO)
release of matrix enzymes from mitochondria  (IEA)
release of sequestered calcium ion into cytosol  (IEA)
response to anesthetic  (ISO)
response to axon injury  (IEA)
response to cocaine  (ISO)
response to copper ion  (ISO)
response to corticosterone  (ISO)
response to gamma radiation  (IEA)
response to hypoxia  (ISO)
response to insulin-like growth factor stimulus  (ISO)
response to ionizing radiation  (IEA)
response to ischemia  (ISO)
response to salt stress  (IEA)
response to toxic substance  (IEA)
response to wounding  (IEA)
response to xenobiotic stimulus  (ISO)
retina development in camera-type eye  (IEA)
retinal cell programmed cell death  (IEA)
Sertoli cell proliferation  (IEA)
sex differentiation  (IEA)
spermatid differentiation  (IEA)
spermatogenesis  (IEA)
supramolecular fiber organization  (IEA)
swimming behavior  (ISO)
T cell homeostatic proliferation  (IEA)
thymocyte apoptotic process  (IEA)
transmembrane transport  (IEA)
vagina development  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Bax
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,349,880 - 21,355,462 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366642,967,865 - 2,973,820 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366642,968,103 - 2,973,652 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BAX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381948,954,875 - 48,961,798 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1948,954,815 - 48,961,798 (+)EnsemblGRCh38hg38GRCh38
GRCh371949,458,132 - 49,465,055 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,149,929 - 54,156,867 (+)NCBINCBI36Build 36hg18NCBI36
Build 341954,149,928 - 54,156,866NCBI
Celera1946,325,480 - 46,332,409 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1945,835,055 - 45,841,975 (+)NCBIHuRef
CHM1_11949,460,326 - 49,467,266 (+)NCBICHM1_1
T2T-CHM13v2.01951,949,757 - 51,956,683 (+)NCBIT2T-CHM13v2.0
Bax
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,111,124 - 45,116,332 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,111,121 - 45,116,322 (-)EnsemblGRCm39 Ensembl
GRCm38745,461,695 - 45,466,903 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,461,697 - 45,466,898 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,717,065 - 52,722,268 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,329,744 - 45,334,864 (-)NCBIMGSCv36mm8
Celera740,917,745 - 40,922,946 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.32NCBI
Bax
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81105,076,472 - 105,081,906 (-)NCBIGRCr8
mRatBN7.2195,940,001 - 95,945,407 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,938,808 - 95,945,368 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,325,431 - 101,330,837 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,798,107 - 109,803,513 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01103,088,504 - 103,093,910 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,451,801 - 101,457,207 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,451,802 - 101,457,207 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,530,747 - 102,536,153 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,933,023 - 95,938,176 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1196,011,133 - 96,016,287 (-)NCBI
Celera190,195,913 - 90,201,319 (-)NCBICelera
Cytogenetic Map1q22NCBI
Bax
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,695,960 - 1,700,244 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,695,960 - 1,700,246 (-)NCBIChiLan1.0ChiLan1.0
BAX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,059,801 - 55,066,754 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11956,985,941 - 56,992,885 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01945,955,926 - 45,962,870 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11954,793,594 - 54,800,466 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,793,594 - 54,800,468 (-)Ensemblpanpan1.1panPan2
BAX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,423,388 - 107,426,464 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,422,424 - 107,426,464 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,945,329 - 106,949,006 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,947,413 - 107,951,165 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,947,430 - 107,951,107 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,614,952 - 107,618,629 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,261,311 - 107,264,988 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,096,913 - 108,100,590 (-)NCBIUU_Cfam_GSD_1.0
BAX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,222,336 - 54,228,147 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,222,341 - 54,228,150 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,100,514 - 50,106,337 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BAX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,186,028 - 42,193,105 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607322,071,985 - 22,079,701 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bax
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248325,050,222 - 5,055,506 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248325,050,222 - 5,068,565 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000013958   ⟹   ENSSTOP00000012508
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366642,967,865 - 2,973,820 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000038927   ⟹   ENSSTOP00000029222
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366642,968,174 - 2,969,554 (+)Ensembl
RefSeq Acc Id: XM_005336649   ⟹   XP_005336706
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934921,349,880 - 21,355,462 (+)NCBI
SpeTri2.0NW_0049366642,968,103 - 2,973,652 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040279758   ⟹   XP_040135692
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934921,349,886 - 21,355,462 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005336706 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135692 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012508.2
  ENSSTOP00000029222.1
GenBank Protein KAG3256463 (Get FASTA)   NCBI Sequence Viewer  
  KAG3256464 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005336706   ⟸   XM_005336649
- Peptide Label: isoform X1
- UniProtKB: I3MM08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040135692   ⟸   XM_040279758
- Peptide Label: isoform X2
Ensembl Acc Id: ENSSTOP00000012508   ⟸   ENSSTOT00000013958
Ensembl Acc Id: ENSSTOP00000029222   ⟸   ENSSTOT00000038927
Protein Domains
Bcl-2 Bcl-2 homology region 1-3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013960 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013958.3 UniProtKB/TrEMBL
  ENSSTOT00000038927.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.437.10 UniProtKB/TrEMBL
InterPro Bcl-2-like_sf UniProtKB/TrEMBL
  Bcl-2_BH1-3 UniProtKB/TrEMBL
  Bcl-2_fam UniProtKB/TrEMBL
  Bcl2-like UniProtKB/TrEMBL
  Bcl2_BH1_motif_CS UniProtKB/TrEMBL
  Bcl2_BH2_motif_CS UniProtKB/TrEMBL
  Bcl2_BH3_motif_CS UniProtKB/TrEMBL
NCBI Gene Bax ENTREZGENE
PANTHER PTHR11256 UniProtKB/TrEMBL
  PTHR11256:SF42 UniProtKB/TrEMBL
Pfam Bcl-2 UniProtKB/TrEMBL
PRINTS BCL2FAMILY UniProtKB/TrEMBL
PROSITE BCL2_FAMILY UniProtKB/TrEMBL
  BH1 UniProtKB/TrEMBL
  BH2 UniProtKB/TrEMBL
  BH3 UniProtKB/TrEMBL
SMART BCL UniProtKB/TrEMBL
Superfamily-SCOP SSF56854 UniProtKB/TrEMBL
UniProt A0A287D6M4_ICTTR UniProtKB/TrEMBL
  I3MM08 ENTREZGENE, UniProtKB/TrEMBL