Ambn (ameloblastin) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ambn (ameloblastin) Ictidomys tridecemlineatus
Analyze
Symbol: Ambn
Name: ameloblastin
RGD ID: 12541806
Description: ENCODES a protein that exhibits growth factor activity (inferred); structural constituent of tooth enamel (inferred); INVOLVED IN regulation of cell population proliferation (ortholog); ASSOCIATED WITH amelogenesis imperfecta type 1F (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528515,702,487 - 15,715,557 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365984,155,061 - 4,167,497 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365984,154,801 - 4,166,565 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ambn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528515,702,487 - 15,715,557 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365984,155,061 - 4,167,497 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365984,154,801 - 4,166,565 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AMBN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38470,592,256 - 70,607,288 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl470,592,256 - 70,607,288 (+)EnsemblGRCh38hg38GRCh38
GRCh37471,457,973 - 71,473,005 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36471,492,590 - 71,507,594 (+)NCBINCBI36Build 36hg18NCBI36
Build 34471,638,760 - 71,653,762NCBI
Celera468,816,162 - 68,831,378 (+)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef467,260,447 - 67,275,390 (+)NCBIHuRef
CHM1_1471,493,982 - 71,509,012 (+)NCBICHM1_1
T2T-CHM13v2.0473,933,220 - 73,948,252 (+)NCBIT2T-CHM13v2.0
Ambn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39588,603,850 - 88,616,390 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl588,603,850 - 88,616,390 (+)EnsemblGRCm39 Ensembl
GRCm38588,455,991 - 88,468,531 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl588,455,991 - 88,468,531 (+)EnsemblGRCm38mm10GRCm38
MGSCv37588,885,036 - 88,897,556 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36589,530,572 - 89,543,092 (+)NCBIMGSCv36mm8
Celera586,604,818 - 86,617,344 (+)NCBICelera
Cytogenetic Map5E1NCBI
cM Map543.63NCBI
Ambn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81419,885,802 - 19,898,422 (-)NCBIGRCr8
mRatBN7.21419,601,761 - 19,614,382 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1419,601,702 - 19,614,393 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1419,591,037 - 19,603,705 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01420,909,907 - 20,922,580 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01419,612,560 - 19,625,205 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01421,239,887 - 21,252,534 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1421,240,398 - 21,252,538 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01421,151,232 - 21,164,256 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41421,183,338 - 21,196,650 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11421,183,341 - 21,196,650 (-)NCBI
Celera1418,940,192 - 18,974,478 (-)NCBICelera
Cytogenetic Map14p22NCBI
Ambn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554472,363,240 - 2,374,827 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554472,363,240 - 2,374,827 (-)NCBIChiLan1.0ChiLan1.0
AMBN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2359,477,321 - 59,492,343 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1459,672,192 - 59,687,203 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0453,616,553 - 53,631,566 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1459,961,939 - 59,976,750 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl459,961,939 - 59,976,750 (-)Ensemblpanpan1.1panPan2
AMBN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11359,899,968 - 59,912,699 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1359,899,960 - 59,912,655 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1359,634,149 - 59,647,121 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01360,705,599 - 60,718,555 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1360,705,595 - 60,718,250 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11360,320,956 - 60,333,943 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01359,812,504 - 59,825,448 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01360,959,429 - 60,972,465 (+)NCBIUU_Cfam_GSD_1.0
AMBN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl867,381,137 - 67,394,394 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1867,381,137 - 67,394,394 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2871,288,922 - 71,302,169 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AMBN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1719,107,182 - 19,121,992 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl719,107,299 - 19,122,285 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660843,763,200 - 3,778,295 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ambn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248901,942,559 - 1,954,490 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248901,943,471 - 1,954,948 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000007955   ⟹   ENSSTOP00000007119
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365984,155,061 - 4,167,497 (-)Ensembl
RefSeq Acc Id: XM_040292332   ⟹   XP_040148266
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528515,702,487 - 15,715,557 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040148266 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007119.2
GenBank Protein KAG3276484 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040148266   ⟸   XM_040292332
- UniProtKB: I3MAQ8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000007119   ⟸   ENSSTOT00000007955


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007952 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007955.2 UniProtKB/TrEMBL
InterPro Amelin UniProtKB/TrEMBL
NCBI Gene Ambn ENTREZGENE
PANTHER AMELOBLASTIN UniProtKB/TrEMBL
  PTHR14115 UniProtKB/TrEMBL
Pfam Amelin UniProtKB/TrEMBL
SMART Amelin UniProtKB/TrEMBL
UniProt I3MAQ8 ENTREZGENE, UniProtKB/TrEMBL