Gcc2 (GRIP and coiled-coil domain containing 2) - Rat Genome Database

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Pathways
Gene: Gcc2 (GRIP and coiled-coil domain containing 2) Ictidomys tridecemlineatus
Analyze
Symbol: Gcc2
Name: GRIP and coiled-coil domain containing 2
RGD ID: 12529131
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN Golgi to plasma membrane protein transport (ortholog); ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 7 (ortholog); ectodermal dysplasia 10A (ortholog); ectodermal dysplasia 10B (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GRIP and coiled-coil domain containing 2, transcript variant X1; GRIP and coiled-coil domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,336,321 - 92,384,642 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493682913,229 - 62,510 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493682913,235 - 61,556 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse:




References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Gcc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,336,321 - 92,384,642 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493682913,229 - 62,510 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493682913,235 - 61,556 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382108,449,206 - 108,509,415 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2108,449,107 - 108,509,415 (+)Ensemblhg38GRCh38
GRCh372109,065,662 - 109,125,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362108,432,068 - 108,492,286 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2103,373,681 - 103,433,949 (+)NCBICelera
Cytogenetic Map2q12.3NCBI
HuRef2102,664,749 - 102,724,917 (+)NCBIHuRef
CHM1_12109,069,859 - 109,130,068 (+)NCBICHM1_1
T2T-CHM13v2.02108,909,826 - 108,970,093 (+)NCBIT2T-CHM13v2.0
Gcc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391058,091,240 - 58,141,421 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1058,091,319 - 58,141,421 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381058,255,408 - 58,305,599 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1058,255,497 - 58,305,599 (+)Ensemblmm10GRCm38
MGSCv371057,718,274 - 57,768,340 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361057,650,883 - 57,700,949 (+)NCBIMGSCv36mm8
Celera1058,993,423 - 59,043,634 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.3NCBI
Gcc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82026,788,472 - 26,836,728 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2026,790,516 - 26,836,726 (+)EnsemblGRCr8
mRatBN7.22026,247,394 - 26,293,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2026,247,404 - 26,293,613 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2027,249,780 - 27,296,009 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02026,636,136 - 26,682,363 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02027,384,236 - 27,430,382 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02027,832,960 - 27,879,764 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,832,932 - 27,879,759 (+)Ensemblrn6Rnor6.0
Rnor_5.02029,653,397 - 29,699,347 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42037,472,178 - 37,518,324 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2027,699,422 - 27,745,448 (+)NCBICelera
RGSC_v3.12037,487,402 - 37,531,803 (-)NCBI
Cytogenetic Map20q11NCBI
Gcc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547012,011,708 - 12,055,907 (+)Ensembl
ChiLan1.0NW_00495547012,011,606 - 12,053,625 (+)NCBIChiLan1.0ChiLan1.0
GCC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21220,582,674 - 20,644,868 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A20,585,441 - 20,647,635 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A94,659,117 - 94,721,491 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A109,682,051 - 109,735,166 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A109,682,552 - 109,734,682 (+)EnsemblpanPan2panpan1.1
GCC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11035,379,055 - 35,431,500 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1035,379,030 - 35,431,457 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1035,300,063 - 35,353,804 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01036,230,723 - 36,284,497 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1036,230,737 - 36,284,102 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11035,959,192 - 36,012,964 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01036,246,341 - 36,300,364 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01036,434,983 - 36,489,300 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
GCC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl347,718,254 - 47,758,999 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1347,718,251 - 47,759,060 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,887,515 - 49,928,295 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GCC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11411,962,757 - 12,026,045 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1411,963,689 - 12,027,503 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660807,721,301 - 7,787,257 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gcc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474911,670,475 - 11,710,053 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474911,670,493 - 11,709,830 (+)NCBIHetGla 1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000023999   ⟹   ENSSTOP00000017101
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493682913,229 - 62,510 (+)Ensembl
RefSeq Acc Id: XM_013365504   ⟹   XP_013220958
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629292,336,321 - 92,384,642 (-)NCBI
SpeTri2.0NW_00493682913,235 - 61,556 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040270886   ⟹   XP_040126820
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629292,336,321 - 92,384,642 (-)NCBI
RefSeq Acc Id: XM_040270887   ⟹   XP_040126821
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629292,336,321 - 92,384,637 (-)NCBI
RefSeq Acc Id: XM_040270888   ⟹   XP_040126822
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629292,336,321 - 92,384,642 (-)NCBI
RefSeq Acc Id: XM_040270889   ⟹   XP_040126823
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629292,336,321 - 92,383,763 (-)NCBI
RefSeq Acc Id: XR_002482965
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629292,349,665 - 92,384,642 (-)NCBI
SpeTri2.0NW_00493682913,235 - 50,267 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005727242
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629292,349,686 - 92,384,642 (-)NCBI
RefSeq Acc Id: XP_013220958   ⟸   XM_013365504
- Peptide Label: isoform X2
- UniProtKB: I3MYA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040126822   ⟸   XM_040270888
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040126820   ⟸   XM_040270886
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040126821   ⟸   XM_040270887
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040126823   ⟸   XM_040270889
- Peptide Label: isoform X3
Ensembl Acc Id: ENSSTOP00000017101   ⟸   ENSSTOT00000023999
Protein Domains
GRIP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028504 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023999.2 UniProtKB/TrEMBL
Gene3D-CATH GRIP domain UniProtKB/TrEMBL
InterPro GCC2_Rab_bind UniProtKB/TrEMBL
  GRIP_dom UniProtKB/TrEMBL
  MT-Golgi_org_protein UniProtKB/TrEMBL
KEGG Report iti:101974534 UniProtKB/TrEMBL
NCBI Gene Gcc2 ENTREZGENE
PANTHER GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED UniProtKB/TrEMBL
Pfam GRIP UniProtKB/TrEMBL
  Rab_bind UniProtKB/TrEMBL
PROSITE GRIP UniProtKB/TrEMBL
SMART Grip UniProtKB/TrEMBL
UniProt I3MYA5 ENTREZGENE, UniProtKB/TrEMBL