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Gene: Uck1 (uridine-cytidine kinase 1) Ictidomys tridecemlineatus

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Symbol:

Uck1

Name:

uridine-cytidine kinase 1

RGD ID:

12501790

Description:

ENCODES a protein that exhibits ATP binding (inferred); cytidine kinase activity (inferred); kinase activity (inferred); INVOLVED IN CMP biosynthetic process (inferred); CTP salvage (inferred); UMP salvage (inferred); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	198,499,351 - 198,502,882 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	18,267,885 - 18,271,423 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	18,267,878 - 18,271,406 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive limb-girdle muscular dystrophy (ISO)

developmental and epileptic encephalopathy (ISO)

early infantile epileptic encephalopathy (ISO)

Ehlers-Danlos syndrome classic type 1 (ISO)

nerve compression syndrome (ISO)

primary coenzyme Q10 deficiency 7 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CMP biosynthetic process (IEA)

CTP salvage (IEA)

UMP salvage (IEA)

Molecular Function

ATP binding (IEA)

cytidine kinase activity (IEA)

kinase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

transferase activity (IEA)

uridine kinase activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Uck1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	198,499,351 - 198,502,882 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	18,267,885 - 18,271,423 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	18,267,878 - 18,271,406 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UCK1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	131,523,801 - 131,531,263 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	131,523,801 - 131,531,264 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	134,399,188 - 134,406,650 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	133,389,012 - 133,396,476 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	131,428,744 - 131,436,209	NCBI
Celera	9	104,939,363 - 104,946,841 (-)	NCBI		Celera
Cytogenetic Map	9	q34.13	NCBI
HuRef	9	103,893,800 - 103,901,279 (-)	NCBI		HuRef
CHM1_1	9	134,548,581 - 134,556,053 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	143,736,763 - 143,744,224 (-)	NCBI		T2T-CHM13v2.0

Uck1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	32,145,014 - 32,150,117 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	32,145,014 - 32,150,171 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	32,255,002 - 32,260,105 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	32,255,002 - 32,260,159 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	32,110,522 - 32,115,625 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	32,077,011 - 32,082,070 (-)	NCBI		MGSCv36	mm8
Celera	2	31,959,332 - 31,964,435 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	22.09	NCBI

Uck1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	35,936,328 - 35,942,213 (-)	NCBI		GRCr8
mRatBN7.2	3	15,538,580 - 15,544,465 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	15,538,591 - 15,544,465 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	18,607,992 - 18,613,850 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	27,192,985 - 27,198,843 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	25,443,461 - 25,449,354 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	11,271,874 - 11,277,757 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	11,271,885 - 11,277,757 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	16,620,744 - 16,626,627 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	11,366,634 - 11,372,517 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	11,264,015 - 11,268,800 (-)	NCBI
Celera	3	10,283,446 - 10,289,273 (-)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

Uck1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	1,203,934 - 1,208,724 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	1,203,934 - 1,208,720 (-)	NCBI	ChiLan1.0	ChiLan1.0

UCK1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	7,823,442 - 7,830,941 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	7,825,808 - 7,832,527 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	102,646,056 - 102,653,525 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	131,285,877 - 131,293,338 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	131,285,877 - 131,293,338 (-)	Ensembl	panpan1.1		panPan2

UCK1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	52,609,972 - 52,615,655 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	52,609,313 - 52,614,622 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	51,878,198 - 51,883,925 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	53,513,447 - 53,519,165 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	53,513,484 - 53,519,162 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	52,291,329 - 52,297,027 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	52,610,265 - 52,615,976 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	52,704,647 - 52,710,374 (+)	NCBI		UU_Cfam_GSD_1.0

UCK1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	271,448,365 - 271,453,816 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	271,448,362 - 271,453,811 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	305,456,743 - 305,462,182 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UCK1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	6,612,306 - 6,634,326 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	6,612,378 - 6,618,968 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666079	8,922,082 - 8,946,096 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Uck1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	4,490,086 - 4,494,924 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	4,490,118 - 4,494,707 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005321098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000004046 ⟹ ENSSTOP00000003630

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936487	18,267,885 - 18,271,423 (-)	Ensembl

RefSeq Acc Id:

XM_005321098 ⟹ XP_005321155

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	198,499,351 - 198,502,880 (-)	NCBI
SpeTri2.0	NW_004936487	18,267,878 - 18,271,406 (-)	NCBI

Sequence:

show sequence

GGGGGTGCTGTTTATGTGTCCCCAGTCCACGGTGTGTGAGAAGATCATGGAGCTGCTGGGACAG
AACGAGGTGGACCACCGGCAGCGCAAGCTGGTCATCCTGAGCCAGGACCGGTTCTATAAGGTCC
TGACCGCGGAGCAGAAGGCTAAGGCCTTGAAGGGACAGTACAATTTCGACCACCCAGATGCTTT
TGATAATGATTTGATGCACAGGACTCTGAAAAACATTGTGGAGGGCAAAACTGTTGAAGTCCCA
ACCTACGATTTTGTGACCCACTCAAGGTTGCCGGAAACCACTGTGGTCTATCCTGCAGACGTGG
TTCTGTTCGAAGGCATCTTGGTGTTCTATAGCCAGGAGATTCGGGACATGTTCCACCTGCGCCT
CTTCGTGGACACGGACTCTGACGTCAGGCTCTCTCGGAGAGTTCTCCGGGATGTGCACCGCGGG
AGGGACCTGGAGCAGATCCTGACCCAGTACACCACCTTCGTCAAGCCCGCCTTCGAGGAATTCT
GCCTTCCGACAAAGAAGTATGCTGACGTCATCATCCCTCGAGGGGTTGACAATATGGTTGCCAT
CAACCTGATTGTGCAGCACATCCAGGACATCTTGAATGGCGACCTCTGTAAGCGGCACCGAGGG
GGAGCCAACGGGCGGAGCTACAAGAGGACCTTCTCTGAGCCAGGAGACCACCCCAGGGTGCTGG
CCTCTGGCAGACGGTCGCACCTGGAGTCCAGCAGCAGACCCCACTGAGGGCCATTACATGCTGT
CCCCCAGTCTGCCAGCAGGGATCCCCACAGACCCGAGTTTCGGGACGGGCATGGGGCACCTCTT
GCCCTTAAAAGGCAGCAGTGCTTCTCCCTGGCTTGTCCTAAGGTGGTGTCAGGGCCAAGGCTCC
TGTGCTCTTGGGGGGAAGCTCACTTTGGTAGGTAAAGACAGGGCTTCCTCTCGTTTAGGGAGGT
TTTAACTTCTCTGGGGGGTCACTTAAGTGCCCTGGCTCATGGTTAGCCTGTGTGCTTGTCCCCA
GGAGGAATGCCAGTCTGCGTTGGGAAACCTGAGGAAGCAGCCTGGGCACTGTGGGCCTGGTGTG
TCTTGACCAGTGAGAATTTCCCAGTAGGGCTTGGTTTACTCGCGCATCACTGAAACAGGCTTTA
AGAGGCGCTATTCACCTTGGTGGACTGTCCAGCAGGACCCATTGCTTCCTCTCCCTCATTCTGT
TCCATACCCCAAGGCTCATGGTGCCCTAGAAACCTTTCCTGACCCACCACTGGGCTGTGGTCCA
ATGTGGTGAGTGCTGGTCTAAGGTGCCTCCGAGGCATTTCCTTCCCTCTTGCCTGTGCCTCAGT
GACAGAGAAGAGGCAGGAACCTTGGCATCAGCCACTATCTCTCTAACCAGCACCACAGAGGGCA
AGGGGTCCAGACCCCAGGTGCCTGCATGGCTCCTGCATCCTGGGGCAGCAGGCAGTGGGCTGTT
GGGTCTGTTCTGGCTGGAACAGAGTCTGCACACAGTCCCACAGGGCCAGGTGCTTCCACCTTAC
CAGGGCTGTCTGGATGGGCTGTCCCTGGTATAGCTCAGCTGTGTCCAGGACAGCAGCCTCAGCA
TGTGCTGGCCTGCAGGTGTTCAGGTCCCTCATGCAAGGCTAGACCTCAGGGCCTCACAAATGGT
CCTGTCCGTTGTCCAAGTTTGTCTTCCCTCCCATGTGACCACCCTTTCTGGAAAAAAGTGTCCT
TTGCCATTGCCACAAGCTAGGCACAGGTTCTTTCCCTTTCTTCCTGTTGAGCACAACTCGTAGT
TACCAGCCACGATGTTCCTGAGCAGCGTGCAGCGCCAGGGCCTTCTGTTGAGTCTTAACAGTTG
TGTTAAGCTTGTGTTCCTTTAGAGGGAGACTCAATAAATAATGTCAGACACAAA

hide sequence

RefSeq Acc Id:

XM_040286511 ⟹ XP_040142445

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	198,500,549 - 198,502,882 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005321155	(Get FASTA)	NCBI Sequence Viewer
	XP_040142445	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003630.3
GenBank Protein	KAG3288216	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005321155 ⟸ XM_005321098
- Peptide Label:	isoform X1
- UniProtKB:	I3M3H9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCPQSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDL MHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDT DSDVRLSRRVLRDVHRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIV QHIQDILNGDLCKRHRGGANGRSYKRTFSEPGDHPRVLASGRRSHLESSSRPH hide sequence

RefSeq Acc Id:	XP_040142445 ⟸ XM_040286511
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000003630 ⟸ ENSSTOT00000004046

Protein Domains

Phosphoribulokinase/uridine kinase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000004058	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000004046.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	PRK/URK	UniProtKB/TrEMBL
	Uridine_kinase-like	UniProtKB/TrEMBL
NCBI Gene	Uck1	ENTREZGENE
PANTHER	URIDINE KINASE	UniProtKB/TrEMBL
Pfam	PRK	UniProtKB/TrEMBL
PRINTS	URIDINKINASE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	I3M3H9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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