Advanced Search (OLGA)

Gene: Snapin (SNAP associated protein) Ictidomys tridecemlineatus

Analyze

Symbol:

Snapin

Name:

SNAP associated protein

RGD ID:

12490482

Description:

ENCODES a protein that exhibits SNARE binding (inferred); INVOLVED IN anterograde axonal transport (inferred); anterograde synaptic vesicle transport (inferred); autophagosome maturation (inferred); ASSOCIATED WITH COVID-19 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN glutamatergic synapse (ortholog); presynapse (ortholog); secretory granule (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SNARE-associated protein Snapin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	24,433,043 - 24,436,084 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	3,462,987 - 3,464,214 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	3,449,585 - 3,464,709 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

gastrointestinal stromal tumor (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterograde axonal transport (IEA)

anterograde synaptic vesicle transport (IEA)

autophagosome maturation (IEA)

chemical synaptic transmission (IEA)

endosome to lysosome transport (IEA)

establishment of vesicle localization (IEA)

intracellular protein transport (IEA)

late endosome to lysosome transport (IEA)

lysosomal lumen acidification (IEA)

lysosome localization (IEA)

lysosome organization (IEA)

negative regulation of neuron projection development (IEA)

neuron cellular homeostasis (IEA)

protein maturation (IEA)

protein-containing complex localization (IEA)

regulation of synaptic vesicle exocytosis (IEA)

retrograde axonal transport (IEA)

synaptic vesicle exocytosis (IEA)

synaptic vesicle fusion to presynaptic active zone membrane (IEA)

synaptic vesicle maturation (IEA)

synaptic vesicle transport (IEA)

terminal button organization (IEA)

Cellular Component

acrosomal vesicle (IEA)

axon cytoplasm (IEA)

BLOC-1 complex (IEA)

BORC complex (IEA)

cytoplasmic vesicle (IEA)

cytosol (IEA)

glutamatergic synapse (ISO)

manchette (IEA)

microvesicle (IEA)

perinuclear region of cytoplasm (IEA)

presynapse (ISO)

secretory granule (ISO)

synapse (IEA)

synaptic vesicle (IEA,ISO)

Molecular Function

protein binding (ISO)

SNARE binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Snapin
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	24,433,043 - 24,436,084 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	3,462,987 - 3,464,214 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	3,449,585 - 3,464,709 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNAPIN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	153,658,654 - 153,661,852 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	153,658,703 - 153,661,852 (+)	Ensembl			hg38	GRCh38
GRCh37	1	153,631,130 - 153,634,328 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	151,897,824 - 151,900,930 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	150,444,272 - 150,447,378	NCBI
Celera	1	126,702,324 - 126,705,505 (+)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	124,994,466 - 124,997,664 (+)	NCBI		HuRef
CHM1_1	1	155,027,119 - 155,030,317 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	152,795,919 - 152,799,117 (+)	NCBI		T2T-CHM13v2.0

Snapin
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	90,395,333 - 90,398,320 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	90,395,333 - 90,398,340 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	90,488,026 - 90,491,013 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	90,488,026 - 90,491,033 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	90,291,948 - 90,294,935 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	90,573,961 - 90,576,931 (-)	NCBI		MGSCv36	mm8
Celera	3	90,525,872 - 90,528,858 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.24	NCBI

Snapin
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	178,269,157 - 178,271,746 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	178,269,166 - 178,272,041 (-)	Ensembl				GRCr8
mRatBN7.2	2	175,971,575 - 175,974,164 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	175,971,257 - 175,974,231 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	183,111,652 - 183,114,246 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	181,133,916 - 181,136,510 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,734,232 - 175,736,824 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	189,878,159 - 189,880,743 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	189,878,168 - 189,880,743 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	209,309,032 - 209,311,616 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	182,762,310 - 182,764,481 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	169,907,172 - 169,909,756 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Snapin
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	306,546 - 308,229 (+)	Ensembl
ChiLan1.0	NW_004955545	306,546 - 308,229 (+)	NCBI	ChiLan1.0	ChiLan1.0

SNAPIN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	96,170,659 - 96,173,840 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	95,903,764 - 95,909,036 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	129,014,668 - 129,018,428 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	132,644,319 - 132,647,095 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	132,644,320 - 132,647,095 (+)	Ensembl			panPan2	panpan1.1

SNAPIN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	43,410,554 - 43,411,929 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	43,410,998 - 43,412,323 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	42,903,507 - 42,904,962 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	43,360,183 - 43,361,638 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	43,358,154 - 43,362,026 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	43,062,261 - 43,063,711 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	43,115,755 - 43,117,214 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	43,399,406 - 43,400,865 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

SNAPIN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	95,984,358 - 95,989,474 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	95,987,524 - 95,989,527 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	104,880,697 - 104,882,699 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNAPIN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	10,147,577 - 10,150,721 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	10,148,099 - 10,150,641 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	9,524,858 - 9,528,002 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snapin
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	3,490,321 - 3,491,946 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624885	3,490,321 - 3,491,963 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021730575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000000661 ⟹ ENSSTOP00000000596

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936580	3,462,987 - 3,464,214 (+)	Ensembl

RefSeq Acc Id:

XM_021730575 ⟹ XP_021586250

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	24,433,043 - 24,436,084 (+)	NCBI
SpeTri2.0	NW_004936580	3,449,585 - 3,464,709 (+)	NCBI

Sequence:

show sequence

ATGGAGATGCGGCTACACCAGGCGCCACTGCTGTGGGACCAGGGAGTGCACTTTATGCTAGAAC
TCAGCCTGATCCCCAGCTCTAGCTGTCCAGGCTTTGGGGCGCAGAGTGACATTCATCAGTCTGC
TGGCTCGGGGCCGGCTGGTCCCGGTGCAGGGGAAGCGTGGGCGGCGGGCGCGCTGACCGTGCGG
CCTTGCGGCCTTTGCAGGGAGAGCCAGGTGGAGCTCCGCGAGCAGATCGACAACCTCGCCGCGG
AACTGTGCCGCATCAACGAGGACCAGAAGGTGGCCTTGGATCTCGACCCCTACGTTAAGAAGCT
GCTCAACGCCCGGCGACGCGTTGTTCTGGTCAACAACATCCTACAGAATGCCCAGGAGCGGCTG
AGGCGGCTAAACCACAGCGTTGCCAAGGAAACAGCCCGCAGGAGGGCAATGCTGGACTCAGGAG
TTTATCCCCCTGGTTCCCCAAGCAAGTAACAAGATGGCAGGGGACTGAGCAGCACAAACAGTTG
TTACCCCACTGCCTTGTTTCAACACACAAGAAGATTCAGGGAACAATTTCTGCAGACTTTGGGA
CACTTAAATGGCAGCCTTGGTTTATTTAAAGCACTTATTCACTACGTGGGAACCCAAGAAACCT
GCGTGCAGTAGACTCAAGTTCCCAGAGGACTTTCGTTACAGCTCTTGCTCCCTTCCAAGAACGA
AATGAGGTTTTTTTCTTAACTACATACTTAATGACCATCTTTTTCAGGCCTCGTCAACCAGACT
GGAGCTTCATTTGTTACGTGTCTGGTTATAGTGGACCCAGGCAACATGTCCTCTACCTGTGACT
TCTCTTTTTCCTTTTGTTTACAGAGGATTTACAAAGACAAGATGAATGACCTCTGTCCACCCTT
TTTTGTTGATTGCACTGGCTTGAATACAACAGCAGTACTGCTAGAACCATTTAATTCAATAAAT
GCTTAAACAGTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_021586250	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000000596.3
GenBank Protein	KAG3281621	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021586250 ⟸ XM_021730575
- UniProtKB:	I3LX44 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEMRLHQAPLLWDQGVHFMLELSLIPSSSCPGFGAQSDIHQSAGSGPAGPGAGEAWAAGALTVR PCGLCRESQVELREQIDNLAAELCRINEDQKVALDLDPYVKKLLNARRRVVLVNNILQNAQERL RRLNHSVAKETARRRAMLDSGVYPPGSPSK hide sequence

Ensembl Acc Id:

ENSSTOP00000000596 ⟸ ENSSTOT00000000661

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000000661	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000000661.3	UniProtKB/TrEMBL
InterPro	Snapin	UniProtKB/TrEMBL
	Snapin/Pallidin/Snn1	UniProtKB/TrEMBL
NCBI Gene	Snapin	ENTREZGENE
PANTHER	PTHR31305	UniProtKB/TrEMBL
	SNARE-ASSOCIATED PROTEIN SNAPIN	UniProtKB/TrEMBL
Pfam	Snapin_Pallidin	UniProtKB/TrEMBL
UniProt	I3LX44	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar