Septin9 (septin 9) - Rat Genome Database

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Gene: Septin9 (septin 9) Ictidomys tridecemlineatus
Analyze
Symbol: Septin9
Name: septin 9
RGD ID: 12488100
Description: ENCODES a protein that exhibits GTP binding (inferred); nucleotide binding (inferred); INVOLVED IN actin cytoskeleton organization (ortholog); anterograde dendritic transport of neurotransmitter receptor complex (ortholog); positive regulation of non-motile cilium assembly (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Adenomatous Polyps (ortholog); amyotrophic neuralgia (ortholog); FOUND IN actin cytoskeleton (ortholog); axoneme (ortholog); cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Sept9; septin-9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056024,125,375 - 4,203,819 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365942,213,459 - 2,286,582 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Septin9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056024,125,375 - 4,203,819 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365942,213,459 - 2,286,582 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEPTIN9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381777,281,499 - 77,500,596 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1777,280,569 - 77,500,596 (+)EnsemblGRCh38hg38GRCh38
GRCh371775,277,581 - 75,496,678 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361772,827,197 - 73,008,273 (+)NCBINCBI36Build 36hg18NCBI36
Build 341772,827,743 - 73,008,269NCBI
Celera1771,879,127 - 72,091,668 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1770,908,680 - 70,922,066 (+)NCBIHuRef
HuRef1770,710,975 - 70,904,981 (+)NCBIHuRef
CHM1_11775,342,249 - 75,561,442 (+)NCBICHM1_1
T2T-CHM13v2.01778,174,746 - 78,394,627 (+)NCBIT2T-CHM13v2.0
Septin9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,090,487 - 117,253,151 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11117,090,487 - 117,253,151 (+)EnsemblGRCm39 Ensembl
GRCm3811117,199,661 - 117,362,325 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,199,661 - 117,362,325 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,060,975 - 117,223,639 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611117,147,810 - 117,178,397 (+)NCBIMGSCv36mm8
Celera11128,945,198 - 129,106,872 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1182.61NCBI
Septin9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,908,557 - 103,077,789 (+)NCBIGRCr8
mRatBN7.210102,409,798 - 102,579,056 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10102,409,711 - 102,579,055 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10107,547,582 - 107,681,629 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010107,010,686 - 107,144,737 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010102,365,460 - 102,499,848 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010106,208,308 - 106,340,747 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10106,264,434 - 106,348,490 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010105,841,829 - 105,987,909 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410107,343,672 - 107,479,964 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110107,358,175 - 107,494,457 (+)NCBI
Celera10101,009,659 - 101,144,045 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
Septin9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555064,942,056 - 5,090,441 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555064,943,108 - 5,033,088 (-)NCBIChiLan1.0ChiLan1.0
SEPTIN9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21993,333,491 - 93,553,759 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11798,162,783 - 98,382,841 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01771,361,002 - 71,580,995 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11776,920,236 - 77,139,586 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1776,920,236 - 77,139,586 (+)Ensemblpanpan1.1panPan2
SEPTIN9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.193,495,764 - 3,571,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl93,448,793 - 3,616,732 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha94,177,822 - 4,324,227 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.094,172,563 - 4,319,394 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl94,172,850 - 4,319,487 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.194,194,434 - 4,343,014 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.094,317,550 - 4,463,926 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.094,400,426 - 4,546,246 (-)NCBIUU_Cfam_GSD_1.0
SEPTIN9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl124,254,775 - 4,405,628 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1124,254,771 - 4,347,526 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,002,058 - 4,153,307 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEPTIN9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11644,211,692 - 44,424,242 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1644,213,623 - 44,310,524 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607714,938,473 - 15,151,219 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Septin9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248016,988,904 - 7,159,072 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248016,988,914 - 7,156,469 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_040268578   ⟹   XP_040124512
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056024,125,375 - 4,203,819 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040124512 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021378.2
  ENSSTOP00000026585.1
GenBank Protein KAG3268394 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040124512   ⟸   XM_040268578
- UniProtKB: I3NAI1 (UniProtKB/TrEMBL)
Protein Domains
Septin-type G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027666 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028346.2 UniProtKB/TrEMBL
  ENSSTOT00000040673.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro G_SEPTIN_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Septin UniProtKB/TrEMBL
  Septin3 UniProtKB/TrEMBL
NCBI Gene Sept9 ENTREZGENE
PANTHER SEPTIN UniProtKB/TrEMBL
Pfam Septin UniProtKB/TrEMBL
PRINTS SEPTIN3 UniProtKB/TrEMBL
PROSITE G_SEPTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287CZ22_ICTTR UniProtKB/TrEMBL
  I3NAI1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-09 Septin9  septin 9  Sept9    Symbol and/or name change 5135510 APPROVED