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Gene: Zranb3 (zinc finger RANBP2-type containing 3) Ictidomys tridecemlineatus

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Symbol:

Zranb3

Name:

zinc finger RANBP2-type containing 3

RGD ID:

12478716

Description:

ENCODES a protein that exhibits DNA helicase activity (ortholog); INVOLVED IN DNA damage response (inferred); DNA repair (inferred); negative regulation of DNA recombination (inferred); ASSOCIATED WITH WHIM Syndrome (ortholog); FOUND IN nuclear replication fork (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

DNA annealing helicase and endonuclease ZRANB3; zinc finger RANBP2-type containing 3, transcript variant X1; zinc finger RANBP2-type containing 3, transcript variant X2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	101,057,646 - 101,288,879 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	40,328,787 - 40,609,533 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	40,328,850 - 40,558,797 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

WHIM Syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response (IEA)

DNA repair (IEA)

negative regulation of DNA recombination (IEA)

replication fork processing (IEA)

replication fork reversal (IEA)

response to UV (IEA)

Cellular Component

nuclear replication fork (IEA)

nucleoplasm (IEA)

Molecular Function

ATP binding (IEA)

ATP-dependent DNA/DNA annealing activity (IEA)

DNA endonuclease activity (IEA)

DNA helicase activity (ISO)

endonuclease activity (IEA)

helicase activity (IEA)

hydrolase activity (IEA)

K63-linked polyubiquitin modification-dependent protein binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Zranb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	101,057,646 - 101,288,879 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	40,328,787 - 40,609,533 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	40,328,850 - 40,558,797 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZRANB3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	135,196,969 - 135,531,218 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	135,136,916 - 135,531,218 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	135,954,539 - 136,288,788 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	135,674,041 - 136,005,276 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	135,728,218 - 135,830,163	NCBI
Celera	2	129,670,506 - 129,999,572 (-)	NCBI		Celera
Cytogenetic Map	2	q21.3	NCBI
HuRef	2	127,950,131 - 128,281,480 (-)	NCBI		HuRef
CHM1_1	2	135,962,511 - 136,293,706 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	135,637,447 - 135,971,741 (-)	NCBI		T2T-CHM13v2.0

Zranb3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	127,881,916 - 128,030,799 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	127,881,921 - 128,030,784 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	127,954,179 - 128,103,053 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	127,954,184 - 128,103,047 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	129,850,763 - 129,998,985 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	129,781,725 - 129,930,593 (-)	NCBI		MGSCv36	mm8
Celera	1	130,582,923 - 130,729,435 (-)	NCBI		Celera
Cytogenetic Map	1	E3	NCBI
cM Map	1	55.8	NCBI

Zranb3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	41,993,110 - 42,148,298 (-)	NCBI		GRCr8
mRatBN7.2	13	39,440,653 - 39,595,782 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	39,440,889 - 39,595,670 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	13	44,661,375 - 44,812,430 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	44,661,398 - 44,798,543 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	49,745,984 - 49,897,700 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	40,648,221 - 40,803,738 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	39,815,144 - 39,969,876 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

Zranb3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	2,680,787 - 2,888,345 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955440	2,683,041 - 2,907,859 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZRANB3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	39,400,603 - 39,755,767 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	39,415,302 - 39,770,737 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	24,331,731 - 24,665,652 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	139,271,306 - 139,603,946 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	139,234,909 - 139,577,193 (-)	Ensembl	panpan1.1		panPan2

ZRANB3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	38,003,273 - 38,302,598 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	37,957,421 - 38,301,888 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	38,247,332 - 38,546,267 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	39,448,903 - 39,748,462 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	39,447,977 - 39,747,839 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	38,091,050 - 38,390,605 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	38,251,868 - 38,553,727 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	39,487,157 - 39,786,272 (-)	NCBI		UU_Cfam_GSD_1.0

ZRANB3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	16,414,757 - 16,727,841 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	16,414,291 - 16,727,659 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	19,093,163 - 19,182,218 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZRANB3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	19,428,139 - 19,739,886 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	19,427,652 - 19,572,384 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666061	2,724,205 - 3,069,554 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zranb3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	34,556,784 - 34,848,965 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624732	34,561,249 - 34,848,093 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021721316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000010156 ⟹ ENSSTOP00000009111

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936469	40,328,787 - 40,582,986 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000034279 ⟹ ENSSTOP00000027906

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936469	40,328,787 - 40,609,533 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000037925 ⟹ ENSSTOP00000028609

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936469	40,328,787 - 40,609,533 (+)	Ensembl

RefSeq Acc Id:

XM_021721316 ⟹ XP_021576991

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	101,057,646 - 101,288,879 (-)	NCBI
SpeTri2.0	NW_004936469	40,328,854 - 40,558,797 (+)	NCBI

Sequence:

show sequence

CTAAACCTGTGGCGGGAGTTGGAGGTTCTGCAGCGAATATACCAGGATCATCATGCCTAAAGTT
CAGAACATAAAAAAGTGTCATAATCCTCAGATTTCTTCCTTAACAAATGAATCCTATCAACAAC
TGGATTTTTTGCCTGAGAAACTAAGAACAAAACTGTTTCCATTCCAGAAAGATGGCATCACTTT
TGCCCTCGGAAGACAGGGCAGGTGTATGGTGGCTGATGAAATGGGTCTAGGAAAGACAATCCAG
GCCATTGCAATTGCTTACTTCTATAAAGAGGAGTGGCCTCTTTTAATTGTGGTGCCTTCATCCC
TGAGGTGCTCCTGGACAGAAGAAATAGAGAAGTGGATTCCAGAGTTAGAACCTGAAGAAATCAA
TGTTATTCAGAATAAAACTGATGTTGGGAGAATATCGACCAGCAAAGTGACAGTTCTGGGTTAT
GGTCTTTTAACCACAGATGCATTGACTTTGATAGATGCACTGAATAATCAGAACTTTAAAGTAG
TTATAGTGGATGAATCACACTACATGAAGTCCAGAACAGCAACCCGCACCAAGATTTTATTGCC
AGTGGTACAGAAATCAAGACGAGCCATTCTTCTTACAGGAACTCCAGCTTTGGGAAGGCCTGAA
GAGCTTTTCATGCAGATTGAAGCTCTTTTTCCACAAAAATTTGGAACATGGACTGACTATGCCA
AAAGATACTGTAATGCACGTATCAGATATTTTGGTAAAAGACCTCAGTGGGATTATAGAGGGGC
ATCAAATCTTAAGGAACTTCACCATCTATTAAATGACATAATGATTAGAAGATTAAAGACTGAA
GTTTTAACCCAGCTGCCCCCTAAAATCAGACAGCATATTCCATTTGATCTTCCCGACAAAGCAG
CCAAGGATTTGAATACCAGTTTGGAAGAATGGAAAAGATTAATGAGATCTCCAAATCCAGGTGG
CACAGAGACTGTTCTGGGCTTGATTACTCGCATATTTAAACAGACTGCTATTGCCAAGGCAGGT
GCAGTAAAGGATTATATTAAGATGATACTTCAGAATGATTCACTTAAGTTTCTGGTTTTTGCTC
ACCATTTAAGCATGCTCCAAGCTTGCACAGAAGCAGTCATTGAAAACAAGACTCGCTACATTAG
GATAGATGGAAGTGTTCCATCTTCAGAAAGGATACATCTGGTTAATCAATTTCAAAATGATCCT
GATACTCGTGTGGCTATTCTAAGCATTCAGGCTGCTGGTCAGGGTTTAACATTTACTGCTGCAA
GTCATGTTGTATTTGCTGAGTTGTACTGGGACCCTGGACATATAAAACAAGCAGAAGACCGTGC
TCACCGAATTGGACAGTGCAGTTCTGTGACTATTCACTACCTTATTGCAAATGGGACTCTGGAC
ACCCTTATGTGGGGAATGCTGAATCGAAAGGTGCGGGTCACTGGGAGCACATTAAATGGTAGGC
AGGAACAGCTTCAGGCTGAAGAAGATGATAAGGAAAAATGGGATTTCCTGCATTTTGCTGAAGC
ATGGACTCCAAATGACAATTTTGAAGAGCTCAGGAAGGAAGTTTTGTTCACTCATTTTGAAAAA
GAAAAACAGCATGATATTCAATCATTCTTTTTACCAAAACCTAAAAAGAGACAATTGGAGACCT
CCTGTGATGAATCAAGGATATTTCAGGAGAAAAATACTATAGTGGCATCGAGGGATATCATTGA
TTCTGAACATAATTTTGAACCTGAAACTAAAAGATTGAAATCAGTCACCACCCATGACTGCAAC
AGCCTACCAGAGGAGAAACCATCCAGGCCTGGACAAACCAAAGACAATTTCATGGAACATGTCC
ATAAGGCCAAGTCCCTGACAACCATCCCAACCCCTCCTGGAAAGGATTGGCAGTGTGGTTTCTG
CACCTATATCAATAATTCACTGTTATCTTATTGTGAAATGTGTGAGAATCCTCAAGGCAGTGCT
GACAGCCTCAACCATATCCAGGACAAAAACAAAAATGAAGAAGATGATTCTCAAATAGACATCT
CCAAAAAAGTACAAGCTAGCTTAGACTGTGACAAACAAGTGATTGCACAGTCTGAACCTAACCA
GTTGGCTAATAGCAAGGAAGAAATGTCAGAAGTTAGGAGGGAAGACAGGCTCACAGCCCAATCA
GATAATGAGCAGTTGAAGAGTTCAGACATTCTGCCAGTATATGATACCTTAATGTTTTGTGCAA
GTAAGAATACTGACCGGATTCACCTCTATACTAAGGATGGAAAACAGATGAACTGTAATTTCAT
TCCTTTGGATATAAAATTAGACCTTTGGGAAGACTTACCAACAAGTTTTCAACTGAAACAGAAT
CGCTCACTGATTTTGCGGTTTGTTCGAGAATGGAGTAGTCTAACTTCCATGAAGCAAAGGATAA
TAAGAAAAAGTGGGCAGTTATTTTGCAGCCCCATCCTTGCTTTGGAAGAGATCACAAAGCAACA
AAACAAACTAAATAGTACCAAACGATATATAACCAAAGAAGATGTTGCTATAGCCTCGATGGAC
AAGATGAAGAATGATGGGGGCCATGTCCGTCTGATCACAAAGAAGTCTGGGCCGTGTGTCTATT
CCACAAAAAACCTTCTTGAAGATGGATCCTGTGTCCCACTTCCAAATCCCTCCACAGCACCAGC
TGATCTCAGTATAGCCAAAGGCTATTTGCAAGCTGTGGATAATGAAGGAAATCCTCTTTGCCTT
CACTGTCAGCATCCCACTTTCCAAACTAAGCAAGAGTGTAAAGCAAATGCTTGGGATTCACGGT
TTTGCTCCCTGAAATGTCAGGAAGAATTTTGGATTCGATCTGATAACAGTTATATGCGAGCCAA
AGTATTTGAAATTGAACATGGTGTGTGTCAGCTATGTAATGTGAATGCACAAGAACTCTTTTTA
TGTCTGAGAGATGCACCTTTAAGCCACAGGAAGAATCTTCTGGATGCTACCTGGACCTCAAAGC
TCCCATTGGAACAGCTAAATGAAATGATAAGAAACCCGAAGGAAGGACATTTCTGGCAGGTGGA
TCATATCAAGCCAGTGTACAAGGGAGGGGGACAGTGCACCCTAAACAACCTGCAGACTCTCTGC
ACAGTCTGTCACAAAGAGAAAACTGCTAAACAAGCCAAGGAAAGAAGCCAGATGAGAAGACAAT
CTCTAGCATCAAAACATGGATCAGATATAACACGATTTTTGGTAAAGAAGTAAAGTAGGAAAAA
ATATATGAATGGATGACAAATTGTCTACATGTGGAAGAA

hide sequence

RefSeq Acc Id:

XM_021721334 ⟹ XP_021577009

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	101,057,646 - 101,288,868 (-)	NCBI
SpeTri2.0	NW_004936469	40,328,850 - 40,558,797 (+)	NCBI

Sequence:

show sequence

CAGCCTAAACCTGTGGCGGGAGTTGGAGGTTCTGCAGCGAATATACCAGTTTTCGGCAGACACA
ACATCTTTGTTTGTATGTGGTGCTGAGGATCGAACCCGGGACGATCACCCGCCAGGCGACGGCG
CTACCGCGATCATCATGCCTAAAGTTCAGAACATAAAAAAGTGTCATAATCCTCAGATTTCTTC
CTTAACAAATGAATCCTATCAACAACTGGATTTTTTGCCTGAGAAACTAAGAACAAAACTGTTT
CCATTCCAGAAAGATGGCATCACTTTTGCCCTCGGAAGACAGGGCAGGTGTATGGTGGCTGATG
AAATGGGTCTAGGAAAGACAATCCAGGCCATTGCAATTGCTTACTTCTATAAAGAGGAGTGGCC
TCTTTTAATTGTGGTGCCTTCATCCCTGAGGTGCTCCTGGACAGAAGAAATAGAGAAGTGGATT
CCAGAGTTAGAACCTGAAGAAATCAATGTTATTCAGAATAAAACTGATGTTGGGAGAATATCGA
CCAGCAAAGTGACAGTTCTGGGTTATGGTCTTTTAACCACAGATGCATTGACTTTGATAGATGC
ACTGAATAATCAGAACTTTAAAGTAGTTATAGTGGATGAATCACACTACATGAAGTCCAGAACA
GCAACCCGCACCAAGATTTTATTGCCAGTGGTACAGAAATCAAGACGAGCCATTCTTCTTACAG
GAACTCCAGCTTTGGGAAGGCCTGAAGAGCTTTTCATGCAGATTGAAGCTCTTTTTCCACAAAA
ATTTGGAACATGGACTGACTATGCCAAAAGATACTGTAATGCACGTATCAGATATTTTGGTAAA
AGACCTCAGTGGGATTATAGAGGGGCATCAAATCTTAAGGAACTTCACCATCTATTAAATGACA
TAATGATTAGAAGATTAAAGACTGAAGTTTTAACCCAGCTGCCCCCTAAAATCAGACAGCATAT
TCCATTTGATCTTCCCGACAAAGCAGCCAAGGATTTGAATACCAGTTTGGAAGAATGGAAAAGA
TTAATGAGATCTCCAAATCCAGGTGGCACAGAGACTGTTCTGGGCTTGATTACTCGCATATTTA
AACAGACTGCTATTGCCAAGGCAGGTGCAGTAAAGGATTATATTAAGATGATACTTCAGAATGA
TTCACTTAAGTTTCTGGTTTTTGCTCACCATTTAAGCATGCTCCAAGCTTGCACAGAAGCAGTC
ATTGAAAACAAGACTCGCTACATTAGGATAGATGGAAGTGTTCCATCTTCAGAAAGGATACATC
TGGTTAATCAATTTCAAAATGATCCTGATACTCGTGTGGCTATTCTAAGCATTCAGGCTGCTGG
TCAGGGTTTAACATTTACTGCTGCAAGTCATGTTGTATTTGCTGAGTTGTACTGGGACCCTGGA
CATATAAAACAAGCAGAAGACCGTGCTCACCGAATTGGACAGTGCAGTTCTGTGACTATTCACT
ACCTTATTGCAAATGGGACTCTGGACACCCTTATGTGGGGAATGCTGAATCGAAAGGTGCGGGT
CACTGGGAGCACATTAAATGGTAGGCAGGAACAGCTTCAGGCTGAAGAAGATGATAAGGAAAAA
TGGGATTTCCTGCATTTTGCTGAAGCATGGACTCCAAATGACAATTTTGAAGAGCTCAGGAAGG
AAGTTTTGTTCACTCATTTTGAAAAAGAAAAACAGCATGATATTCAATCATTCTTTTTACCAAA
ACCTAAAAAGAGACAATTGGAGACCTCCTGTGATGAATCAAGGATATTTCAGGAGAAAAATACT
ATAGTGGCATCGAGGGATATCATTGATTCTGAACATAATTTTGAACCTGAAACTAAAAGATTGA
AATCAGTCACCACCCATGACTGCAACAGCCTACCAGAGGAGAAACCATCCAGGCCTGGACAAAC
CAAAGACAATTTCATGGAACATGTCCATAAGGCCAAGTCCCTGACAACCATCCCAACCCCTCCT
GGAAAGGATTGGCAGTGTGGTTTCTGCACCTATATCAATAATTCACTGTTATCTTATTGTGAAA
TGTGTGAGAATCCTCAAGGCAGTGCTGACAGCCTCAACCATATCCAGGACAAAAACAAAAATGA
AGAAGATGATTCTCAAATAGACATCTCCAAAAAAGTACAAGCTAGCTTAGACTGTGACAAACAA
GTGATTGCACAGTCTGAACCTAACCAGTTGGCTAATAGCAAGGAAGAAATGTCAGAAGTTAGGA
GGGAAGACAGGCTCACAGCCCAATCAGATAATGAGCAGTTGAAGAGTTCAGACATTCTGCCAGT
ATATGATACCTTAATGTTTTGTGCAAGTAAGAATACTGACCGGATTCACCTCTATACTAAGGAT
GGAAAACAGATGAACTGTAATTTCATTCCTTTGGATATAAAATTAGACCTTTGGGAAGACTTAC
CAACAAGTTTTCAACTGAAACAGAATCGCTCACTGATTTTGCGGTTTGTTCGAGAATGGAGTAG
TCTAACTTCCATGAAGCAAAGGATAATAAGAAAAAGTGGGCAGTTATTTTGCAGCCCCATCCTT
GCTTTGGAAGAGATCACAAAGCAACAAAACAAACTAAATAGTACCAAACGATATATAACCAAAG
AAGATGTTGCTATAGCCTCGATGGACAAGATGAAGAATGATGGGGGCCATGTCCGTCTGATCAC
AAAGAAGTCTGGGCCGTGTGTCTATTCCACAAAAAACCTTCTTGAAGATGGATCCTGTGTCCCA
CTTCCAAATCCCTCCACAGCACCAGCTGATCTCAGTATAGCCAAAGGCTATTTGCAAGCTGTGG
ATAATGAAGGAAATCCTCTTTGCCTTCACTGTCAGCATCCCACTTTCCAAACTAAGCAAGAGTG
TAAAGCAAATGCTTGGGATTCACGGTTTTGCTCCCTGAAATGTCAGGAAGAATTTTGGATTCGA
TCTGATAACAGTTATATGCGAGCCAAAGTATTTGAAATTGAACATGGTGTGTGTCAGCTATGTA
ATGTGAATGCACAAGAACTCTTTTTATGTCTGAGAGATGCACCTTTAAGCCACAGGAAGAATCT
TCTGGATGCTACCTGGACCTCAAAGCTCCCATTGGAACAGCTAAATGAAATGATAAGAAACCCG
AAGGAAGGACATTTCTGGCAGGTGGATCATATCAAGCCAGTGTACAAGGGAGGGGGACAGTGCA
CCCTAAACAACCTGCAGACTCTCTGCACAGTCTGTCACAAAGAGAAAACTGCTAAACAAGCCAA
GGAAAGAAGCCAGATGAGAAGACAATCTCTAGCATCAAAACATGGATCAGATATAACACGATTT
TTGGTAAAGAAGTAAAGTAGGAAAAAATATATGAATGGATGACAAATTGTCTACATGTGGAAGA
A

hide sequence

RefSeq Acc Id:

XM_040294247 ⟹ XP_040150181

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	101,057,646 - 101,288,879 (-)	NCBI

RefSeq Acc Id:

XM_040294248 ⟹ XP_040150182

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	101,057,646 - 101,288,853 (-)	NCBI

RefSeq Acc Id:

XM_040294249 ⟹ XP_040150183

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	101,057,646 - 101,272,980 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_021576991	(Get FASTA)	NCBI Sequence Viewer
	XP_021577009	(Get FASTA)	NCBI Sequence Viewer
	XP_040150181	(Get FASTA)	NCBI Sequence Viewer
	XP_040150182	(Get FASTA)	NCBI Sequence Viewer
	XP_040150183	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009111.3
	ENSSTOP00000027906.1
	ENSSTOP00000028609.1
GenBank Protein	KAG3274388	(Get FASTA)	NCBI Sequence Viewer
	KAG3274389	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021577009 ⟸ XM_021721334
- Peptide Label:	isoform X1
- UniProtKB:	I3MEY1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPKVQNIKKCHNPQISSLTNESYQQLDFLPEKLRTKLFPFQKDGITFALGRQGRCMVADEMGLG KTIQAIAIAYFYKEEWPLLIVVPSSLRCSWTEEIEKWIPELEPEEINVIQNKTDVGRISTSKVT VLGYGLLTTDALTLIDALNNQNFKVVIVDESHYMKSRTATRTKILLPVVQKSRRAILLTGTPAL GRPEELFMQIEALFPQKFGTWTDYAKRYCNARIRYFGKRPQWDYRGASNLKELHHLLNDIMIRR LKTEVLTQLPPKIRQHIPFDLPDKAAKDLNTSLEEWKRLMRSPNPGGTETVLGLITRIFKQTAI AKAGAVKDYIKMILQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVPSSERIHLVNQF QNDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVTIHYLIAN GTLDTLMWGMLNRKVRVTGSTLNGRQEQLQAEEDDKEKWDFLHFAEAWTPNDNFEELRKEVLFT HFEKEKQHDIQSFFLPKPKKRQLETSCDESRIFQEKNTIVASRDIIDSEHNFEPETKRLKSVTT HDCNSLPEEKPSRPGQTKDNFMEHVHKAKSLTTIPTPPGKDWQCGFCTYINNSLLSYCEMCENP QGSADSLNHIQDKNKNEEDDSQIDISKKVQASLDCDKQVIAQSEPNQLANSKEEMSEVRREDRL TAQSDNEQLKSSDILPVYDTLMFCASKNTDRIHLYTKDGKQMNCNFIPLDIKLDLWEDLPTSFQ LKQNRSLILRFVREWSSLTSMKQRIIRKSGQLFCSPILALEEITKQQNKLNSTKRYITKEDVAI ASMDKMKNDGGHVRLITKKSGPCVYSTKNLLEDGSCVPLPNPSTAPADLSIAKGYLQAVDNEGN PLCLHCQHPTFQTKQECKANAWDSRFCSLKCQEEFWIRSDNSYMRAKVFEIEHGVCQLCNVNAQ ELFLCLRDAPLSHRKNLLDATWTSKLPLEQLNEMIRNPKEGHFWQVDHIKPVYKGGGQCTLNNL QTLCTVCHKEKTAKQAKERSQMRRQSLASKHGSDITRFLVKK hide sequence

RefSeq Acc Id:	XP_021576991 ⟸ XM_021721316
- Peptide Label:	isoform X1
- UniProtKB:	I3MEY1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPKVQNIKKCHNPQISSLTNESYQQLDFLPEKLRTKLFPFQKDGITFALGRQGRCMVADEMGLG KTIQAIAIAYFYKEEWPLLIVVPSSLRCSWTEEIEKWIPELEPEEINVIQNKTDVGRISTSKVT VLGYGLLTTDALTLIDALNNQNFKVVIVDESHYMKSRTATRTKILLPVVQKSRRAILLTGTPAL GRPEELFMQIEALFPQKFGTWTDYAKRYCNARIRYFGKRPQWDYRGASNLKELHHLLNDIMIRR LKTEVLTQLPPKIRQHIPFDLPDKAAKDLNTSLEEWKRLMRSPNPGGTETVLGLITRIFKQTAI AKAGAVKDYIKMILQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVPSSERIHLVNQF QNDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVTIHYLIAN GTLDTLMWGMLNRKVRVTGSTLNGRQEQLQAEEDDKEKWDFLHFAEAWTPNDNFEELRKEVLFT HFEKEKQHDIQSFFLPKPKKRQLETSCDESRIFQEKNTIVASRDIIDSEHNFEPETKRLKSVTT HDCNSLPEEKPSRPGQTKDNFMEHVHKAKSLTTIPTPPGKDWQCGFCTYINNSLLSYCEMCENP QGSADSLNHIQDKNKNEEDDSQIDISKKVQASLDCDKQVIAQSEPNQLANSKEEMSEVRREDRL TAQSDNEQLKSSDILPVYDTLMFCASKNTDRIHLYTKDGKQMNCNFIPLDIKLDLWEDLPTSFQ LKQNRSLILRFVREWSSLTSMKQRIIRKSGQLFCSPILALEEITKQQNKLNSTKRYITKEDVAI ASMDKMKNDGGHVRLITKKSGPCVYSTKNLLEDGSCVPLPNPSTAPADLSIAKGYLQAVDNEGN PLCLHCQHPTFQTKQECKANAWDSRFCSLKCQEEFWIRSDNSYMRAKVFEIEHGVCQLCNVNAQ ELFLCLRDAPLSHRKNLLDATWTSKLPLEQLNEMIRNPKEGHFWQVDHIKPVYKGGGQCTLNNL QTLCTVCHKEKTAKQAKERSQMRRQSLASKHGSDITRFLVKK hide sequence

RefSeq Acc Id:	XP_040150181 ⟸ XM_040294247
- Peptide Label:	isoform X1
- UniProtKB:	I3MEY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040150182 ⟸ XM_040294248
- Peptide Label:	isoform X2
- UniProtKB:	I3MEY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040150183 ⟸ XM_040294249
- Peptide Label:	isoform X3
- UniProtKB:	I3MEY1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000009111 ⟸ ENSSTOT00000010156

Ensembl Acc Id:

ENSSTOP00000027906 ⟸ ENSSTOT00000034279

Ensembl Acc Id:

ENSSTOP00000028609 ⟸ ENSSTOT00000037925

Protein Domains

Helicase ATP-binding Helicase C-terminal RanBP2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010155	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010156.3	UniProtKB/TrEMBL
	ENSSTOT00000034279.1	UniProtKB/TrEMBL
	ENSSTOT00000037925.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.30.50	UniProtKB/TrEMBL
	3.40.50.10810	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
	Zn-finger domain of Sec23/24	UniProtKB/TrEMBL
InterPro	Helicase_ATP-bd	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	HNH	UniProtKB/TrEMBL
	HNH_nuc	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SNF2-like_sf	UniProtKB/TrEMBL
	SNF2/RAD54-like_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
	Znf_RanBP2	UniProtKB/TrEMBL
	Znf_RanBP2_sf	UniProtKB/TrEMBL
NCBI Gene	Zranb3	ENTREZGENE
PANTHER	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3	UniProtKB/TrEMBL
	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	Helicase_C	UniProtKB/TrEMBL
	HNH	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
	zf-RanBP	UniProtKB/TrEMBL
PROSITE	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
	ZF_RANBP2_1	UniProtKB/TrEMBL
	ZF_RANBP2_2	UniProtKB/TrEMBL
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
	HNHc	UniProtKB/TrEMBL
	ZnF_RBZ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
	SSF90209	UniProtKB/TrEMBL
UniProt	A0A287D2V0_ICTTR	UniProtKB/TrEMBL
	A0A287D505_ICTTR	UniProtKB/TrEMBL
	I3MEY1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar