Uckl1 (uridine-cytidine kinase 1 like 1) - Rat Genome Database

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Gene: Uckl1 (uridine-cytidine kinase 1 like 1) Ictidomys tridecemlineatus
Analyze
Symbol: Uckl1
Name: uridine-cytidine kinase 1 like 1
RGD ID: 12473108
Description: ENCODES a protein that exhibits ATP binding (inferred); cytidine kinase activity (inferred); kinase activity (inferred); INVOLVED IN CMP biosynthetic process (inferred); CTP salvage (inferred); UMP salvage (inferred); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; mitochondrial neurogastrointestinal encephalopathy syndrome pathway; ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uridine-cytidine kinase 1 like 1, transcript variant X1; uridine-cytidine kinase 1 like 1, transcript variant X2; uridine-cytidine kinase 1 like 1, transcript variant X3; uridine-cytidine kinase 1 like 1, transcript variant X4; uridine-cytidine kinase 1 like 1, transcript variant X5; uridine-cytidine kinase 1 like 1, transcript variant X6; uridine-cytidine kinase 1 like 1, transcript variant X7; uridine-cytidine kinase 1 like 1, transcript variant X8; uridine-cytidine kinase-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,690,998 - 195,702,853 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651411,144,026 - 11,156,455 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651411,144,641 - 11,156,470 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Uckl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,690,998 - 195,702,853 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651411,144,026 - 11,156,455 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651411,144,641 - 11,156,470 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UCKL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,939,829 - 63,956,416 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,939,829 - 63,956,416 (-)EnsemblGRCh38hg38GRCh38
GRCh372062,571,182 - 62,587,769 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362062,041,630 - 62,058,212 (-)NCBINCBI36Build 36hg18NCBI36
Build 342062,041,634 - 62,058,212NCBI
Celera2059,255,043 - 59,274,434 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2059,304,567 - 59,323,105 (-)NCBIHuRef
CHM1_12062,471,794 - 62,488,226 (-)NCBICHM1_1
T2T-CHM13v2.02065,759,678 - 65,777,377 (-)NCBIT2T-CHM13v2.0
Uckl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392181,210,942 - 181,223,820 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2181,210,942 - 181,226,685 (-)EnsemblGRCm39 Ensembl
GRCm382181,569,149 - 181,582,027 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,569,149 - 181,584,892 (-)EnsemblGRCm38mm10GRCm38
MGSCv372181,303,857 - 181,316,678 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362181,498,559 - 181,511,380 (-)NCBIMGSCv36mm8
Celera2185,650,746 - 185,663,572 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.66NCBI
Uckl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83189,052,365 - 189,064,939 (-)NCBIGRCr8
mRatBN7.23168,674,849 - 168,687,513 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,674,849 - 168,698,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3173,054,030 - 173,066,604 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03182,013,124 - 182,025,698 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,675,774 - 178,688,348 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03177,066,022 - 177,078,611 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3177,066,014 - 177,078,594 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,775,487 - 180,788,073 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,707,803 - 170,720,880 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3163,900,156 - 163,912,730 (+)NCBICelera
Cytogenetic Map3q43NCBI
Uckl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528297,952 - 311,306 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955528297,952 - 311,306 (+)NCBIChiLan1.0ChiLan1.0
UCKL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,751,874 - 69,776,594 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,743,884 - 69,768,578 (-)NCBINHGRI_mPanPan1
PanPan1.12061,860,084 - 61,876,202 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,860,084 - 61,876,194 (-)Ensemblpanpan1.1panPan2
UCKL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,412,520 - 47,423,222 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2447,412,521 - 47,432,860 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,545,991 - 46,557,047 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02448,551,585 - 48,562,625 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2448,551,592 - 48,562,625 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12447,395,875 - 47,406,868 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,520,665 - 47,531,762 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02448,259,048 - 48,269,306 (-)NCBIUU_Cfam_GSD_1.0
UCKL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,785,422 - 62,796,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,785,419 - 62,796,396 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UCKL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,267 - 299,148 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2282,365 - 299,099 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605047,812,703 - 47,832,460 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uckl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,566,007 - 29,581,895 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474129,568,980 - 29,581,923 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000011039   ⟹   ENSSTOP00000009904
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493651411,144,782 - 11,156,455 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000034043   ⟹   ENSSTOP00000025574
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493651411,144,026 - 11,156,270 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000042031   ⟹   ENSSTOP00000025101
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493651411,144,655 - 11,156,270 (-)Ensembl
RefSeq Acc Id: XM_005325348   ⟹   XP_005325405
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,691,002 - 195,702,851 (-)NCBI
SpeTri2.0NW_00493651411,144,645 - 11,156,455 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005325349   ⟹   XP_005325406
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,691,002 - 195,702,600 (-)NCBI
SpeTri2.0NW_00493651411,144,645 - 11,153,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013358625   ⟹   XP_013214079
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,690,998 - 195,702,823 (-)NCBI
SpeTri2.0NW_00493651411,144,641 - 11,156,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013358626   ⟹   XP_013214080
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,691,027 - 195,702,603 (-)NCBI
SpeTri2.0NW_00493651411,144,655 - 11,153,637 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013358627   ⟹   XP_013214081
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,691,027 - 195,702,603 (-)NCBI
SpeTri2.0NW_00493651411,144,655 - 11,153,720 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726434   ⟹   XP_021582109
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,691,027 - 195,702,838 (-)NCBI
SpeTri2.0NW_00493651411,144,655 - 11,156,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726435   ⟹   XP_021582110
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,691,027 - 195,702,594 (-)NCBI
SpeTri2.0NW_00493651411,144,655 - 11,152,275 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726436   ⟹   XP_021582111
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,691,027 - 195,702,594 (-)NCBI
SpeTri2.0NW_00493651411,144,655 - 11,152,275 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275146   ⟹   XP_040131080
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,691,002 - 195,702,837 (-)NCBI
RefSeq Acc Id: XM_040275147   ⟹   XP_040131081
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,691,002 - 195,702,600 (-)NCBI
RefSeq Acc Id: XR_005729328
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,692,135 - 195,702,853 (-)NCBI
RefSeq Acc Id: XP_005325405   ⟸   XM_005325348
- Peptide Label: isoform X2
- UniProtKB: I3MGK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005325406   ⟸   XM_005325349
- Peptide Label: isoform X6
- UniProtKB: I3MGK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013214079   ⟸   XM_013358625
- Peptide Label: isoform X1
- UniProtKB: I3MGK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013214081   ⟸   XM_013358627
- Peptide Label: isoform X7
- UniProtKB: I3MGK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013214080   ⟸   XM_013358626
- Peptide Label: isoform X5
- UniProtKB: I3MGK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582109   ⟸   XM_021726434
- Peptide Label: isoform X3
- UniProtKB: I3MGK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582111   ⟸   XM_021726436
- Peptide Label: isoform X10
- UniProtKB: I3MGK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582110   ⟸   XM_021726435
- Peptide Label: isoform X9
- UniProtKB: I3MGK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131080   ⟸   XM_040275146
- Peptide Label: isoform X4
- UniProtKB: I3MGK1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131081   ⟸   XM_040275147
- Peptide Label: isoform X8
- UniProtKB: I3MGK1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000025101   ⟸   ENSSTOT00000042031
Ensembl Acc Id: ENSSTOP00000025574   ⟸   ENSSTOT00000034043
Ensembl Acc Id: ENSSTOP00000009904   ⟸   ENSSTOT00000011039

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011039 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011039.3 UniProtKB/TrEMBL
  ENSSTOT00000034043.1 UniProtKB/TrEMBL
  ENSSTOT00000042031.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.2020 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  PRibTrfase_dom UniProtKB/TrEMBL
  PRK/URK UniProtKB/TrEMBL
  PRTase-like UniProtKB/TrEMBL
  Uridine_kinase-like UniProtKB/TrEMBL
NCBI Gene Uckl1 ENTREZGENE
PANTHER URIDINE KINASE UniProtKB/TrEMBL
Pfam PRK UniProtKB/TrEMBL
  UPRTase UniProtKB/TrEMBL
PRINTS URIDINKINASE UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF53271 UniProtKB/TrEMBL
UniProt A0A287CV03_ICTTR UniProtKB/TrEMBL
  A0A287CWD2_ICTTR UniProtKB/TrEMBL
  I3MGK1 ENTREZGENE, UniProtKB/TrEMBL