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Gene: Hnrnpa1 (heterogeneous nuclear ribonucleoprotein A1) Ictidomys tridecemlineatus

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Symbol:

Hnrnpa1

Name:

heterogeneous nuclear ribonucleoprotein A1

RGD ID:

12464356

Description:

ENCODES a protein that exhibits DNA binding (ortholog); DNA/DNA annealing activity (ortholog); G-rich strand telomeric DNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); cellular response to epidermal growth factor stimulus (ortholog); cellular response to glucose starvation (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 20 (ortholog); Animal Disease Models (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleoplasmic periphery of the nuclear pore complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

heterogeneous nuclear ribonucleoprotein A1, transcript variant X1; heterogeneous nuclear ribonucleoprotein A1, transcript variant X4; heterogeneous nuclear ribonucleoprotein A1, transcript variant X5; heterogeneous nuclear ribonucleoprotein A1, transcript variant X7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	61,677,106 - 61,683,541 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936512	11,481,017 - 11,487,737 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

amyotrophic lateral sclerosis type 20 (ISO)

Animal Disease Models (ISO)

Animal Mammary Neoplasms (ISO)

carcinoma (ISO)

Colorectal Neoplasms (ISO)

distal myopathy 3 (ISO)

Experimental Mammary Neoplasms (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3 (ISO)

inclusion body myopathy with Paget disease of bone and frontotemporal dementia (ISO)

lung adenocarcinoma (ISO)

lung non-small cell carcinoma (ISO)

Neurodevelopmental Disorders (ISO)

primary progressive multiple sclerosis (ISO)

relapsing-remitting multiple sclerosis (ISO)

secondary progressive multiple sclerosis (ISO)

tropical spastic paraparesis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alternative mRNA splicing, via spliceosome (ISO)

cellular response to epidermal growth factor stimulus (ISO)

cellular response to glucose starvation (ISO)

cellular response to potassium ion (ISO)

cellular response to sodium arsenite (ISO)

import into nucleus (ISO)

lung development (ISO)

male gonad development (ISO)

mRNA splicing, via spliceosome (IEA)

negative regulation of telomere maintenance via telomerase (ISO)

nuclear export (ISO)

positive regulation of action potential (ISO)

positive regulation of gene expression (ISO)

positive regulation of telomere maintenance via telomerase (ISO)

regulation of alternative mRNA splicing, via spliceosome (ISO)

regulation of RNA splicing (ISO)

response to endoplasmic reticulum stress (ISO)

RNA splicing (ISO)

symbiont-mediated transformation of host cell (ISO)

Cellular Component

catalytic step 2 spliceosome (IEA)

cytoplasm (ISO)

nucleoplasm (ISO)

nucleoplasmic periphery of the nuclear pore complex (ISO)

nucleus (IEA)

ribonucleoprotein complex (ISO)

spliceosomal complex (ISO)

synapse (ISO)

Molecular Function

DNA binding (ISO)

DNA/DNA annealing activity (ISO)

G-rich strand telomeric DNA binding (ISO)

identical protein binding (ISO)

miRNA binding (ISO)

mRNA 3'-UTR binding (IEA,ISO)

mRNA binding (ISO)

pre-mRNA binding (ISO)

protein binding (ISO)

protein domain specific binding (ISO)

RNA binding (IEA,ISO)

RNA strand annealing activity (ISO)

sequence-specific mRNA binding (ISO)

single-stranded DNA binding (ISO)

single-stranded RNA binding (ISO)

telomeric repeat-containing RNA binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Hnrnpa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	61,677,106 - 61,683,541 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936512	11,481,017 - 11,487,737 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HNRNPA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	54,280,726 - 54,287,087 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	54,280,193 - 54,287,088 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	54,674,510 - 54,680,871 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	52,960,755 - 52,965,297 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	52,960,754 - 52,965,297	NCBI
Celera	12	54,326,467 - 54,331,009 (+)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	51,713,759 - 51,718,301 (+)	NCBI		HuRef
CHM1_1	12	54,641,226 - 54,645,768 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	54,247,303 - 54,253,664 (+)	NCBI		T2T-CHM13v2.0

Hnrnpa1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	103,148,840 - 103,155,119 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	103,148,859 - 103,155,119 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	103,239,943 - 103,246,698 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	103,240,432 - 103,246,692 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	103,070,863 - 103,075,386 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	103,068,466 - 103,072,989 (+)	NCBI		MGSCv36	mm8
Celera	15	105,402,021 - 105,406,544 (+)	NCBI		Celera
Cytogenetic Map	15	F3	NCBI
cM Map	15	58.58	NCBI

Hnrnpa1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	136,253,633 - 136,260,085 (+)	NCBI		GRCr8
mRatBN7.2	7	134,375,318 - 134,381,610 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	134,375,150 - 134,381,609 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	136,130,862 - 136,135,162 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	138,360,240 - 138,364,540 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	138,346,358 - 138,350,660 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	144,865,302 - 144,871,592 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	144,865,608 - 144,871,585 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	142,647,071 - 142,652,967 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	142,150,229 - 142,154,520 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	142,230,417 - 142,234,709 (+)	NCBI
Celera	7	130,801,278 - 130,805,569 (+)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

Hnrnpa1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955458	1,530,163 - 1,536,874 (+)	NCBI	ChiLan1.0	ChiLan1.0

HNRNPA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	39,884,192 - 39,891,112 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	39,880,960 - 39,887,881 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	34,456,900 - 34,463,317 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	35,182,164 - 35,188,651 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	35,184,943 - 35,188,443 (-)	Ensembl	panpan1.1		panPan2

HNRNPA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	1,013,459 - 1,020,083 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	1,015,868 - 1,019,891 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	45,235,341 - 45,240,080 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	1,012,273 - 1,017,012 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	1,012,271 - 1,016,841 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	1,031,242 - 1,035,976 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	1,010,967 - 1,017,580 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	45,639,146 - 45,643,882 (+)	NCBI		UU_Cfam_GSD_1.0

HNRNPA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	19,485,096 - 19,491,417 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	19,485,033 - 19,491,418 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	20,329,539 - 20,334,145 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HNRNPA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	50,397,173 - 50,403,192 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	50,396,888 - 50,400,802 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	195,638,486 - 195,645,432 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hnrnpa1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624904	2,314,249 - 2,318,791 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624904	2,314,197 - 2,320,900 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005325076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013358440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013358441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013358442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001229747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001229748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002483944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005325076 ⟹ XP_005325133

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	61,679,404 - 61,683,541 (-)	NCBI
SpeTri2.0	NW_004936512	11,481,019 - 11,485,432 (+)	NCBI

Sequence:

show sequence

AGGTGAATGTATTATATGGGTGTGGAAGACGAAAAAGGCGTTTACATACCTTGGGTATATTCAA
ATATGAATGATTGGCGGGCTAGCCAATCAGACTGGTTAAGAGTAACGTAGCTCAGGCACCAATG
ACTCAAGGGGGCGGGGCTTGCGTAGAACGCCCAAACGGATGACGTTACACAGCAGTACGGAACC
ATAGACCAATAGAAGGAGGAAGTTATTTCAGACAGCCAATCGGAGCTTTGGAGGGGCGGAGTCT
GCCAATGCCAAAAGCGAGGAGGCGGGATAAAAAGGCGAGGCTGAAGGTAGGCTGGTGGATACGT
TCGTTAGCTTACTCCTTTCTGCCCGTGGACGCCGCCGAGAAAGCATCGTTAAAGTCTGTCTTCT
TGCTGCCGTCATGTCTAAATCAGAGTCCCCTAAAGAGCCCGAACAGCTGCGGAAGCTATTCATC
GGAGGGCTGAGCTTTGAAACAACTGATGAGAGTCTGAGAAGCCATTTTGAGCAATGGGGAACAC
TCACGGATTGTGTGGTAATGAGAGATCCAAACACCAAGCGCTCCAGAGGCTTTGGGTTTGTCAC
TTATGCCACTGTGGAGGAAGTGGATGCAGCCATGAATGCAAGACCACACAAAGTGGATGGTAGA
GTTGTGGAACCAAAGAGAGCTGTCTCACGAGAAGATTCTCAAAGACCAGGGGCCCACTTAACTG
TGAAAAAGATCTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTACGAGATTATTT
TGAACAGTATGGGAAAATTGAAGTTATTGAAATCATGACTGACCGAGGCAGTGGAAAGAAAAGG
GGCTTTGCTTTTGTAACTTTTGATGACCATGACTCTGTGGATAAGATTGTCATTCAGAAATACC
ATACTGTGAATGGCCACAACTGTGAAGTGAGGAAAGCCCTATCAAAGCAAGAGATGGCTAGTGC
CTCATCTAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTCGGTGGTGGTCGTGGAGGTGGTTTT
GGTGGAAATGACAATTTTGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGTC
GTGGTGGTGGTGGATATGGTGGCAGCGGGGATGGCTACAATGGATTTGGTAATGATGGAAGCAA
TTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAGTTACAACAATCAGTCATCAAATTTTGGA
CCCATGAAGGGTGGAAACTTTGGAGGCAGAAGCTCTGGACCTTACGGTGGTGGAGGCCAATATT
TTGCCAAACCACGAAACCAAGGTGGCTATGGTGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGG
CAGAAGGTTTTAATACTGCCAGGAAACAAAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGACAG
GGAAGCTACAGGTTACAACAGATTTGTGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTG
CTACAAAGAAGACATGGTTTAGACAATACTCATGTGTATGGGCAAAAAAACTCGAGGACTGTAT
TTGTGACTAATTGTATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAA
CAAAGGGTTT

hide sequence

RefSeq Acc Id:

XM_013358440 ⟹ XP_013213894

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	61,679,404 - 61,683,541 (-)	NCBI
SpeTri2.0	NW_004936512	11,481,017 - 11,485,432 (+)	NCBI

Sequence:

show sequence

CGAGGTGAATGTATTATATGGGTGTGGAAGACGAAAAAGGCGTTTACATACCTTGGGTATATTC
AAATATGAATGATTGGCGGGCTAGCCAATCAGACTGGTTAAGAGTAACGTAGCTCAGGCACCAA
TGACTCAAGGGGGCGGGGCTTGCGTAGAACGCCCAAACGGATGACGTTACACAGCAGTACGGAA
CCATAGACCAATAGAAGGAGGAAGTTATTTCAGACAGCCAATCGGAGCTTTGGAGGGGCGGAGT
CTGCCAATGCCAAAAGCGAGGAGGCGGGATAAAAAGGCGAGGCTGAAGGTAGGCTGGTGGATAC
GTTCGTTAGCTTACTCCTTTCTGCCCGTGGACGCCGCCGAGAAAGCATCGTTAAAGTCTGTCTT
CTTGCTGCCGTCATGTCTAAATCAGAGTCCCCTAAAGAGCCCGAACAGCTGCGGAAGCTATTCA
TCGGAGGGCTGAGCTTTGAAACAACTGATGAGAGTCTGAGAAGCCATTTTGAGCAATGGGGAAC
ACTCACGGATTGTGTGGTAATGAGAGATCCAAACACCAAGCGCTCCAGAGGCTTTGGGTTTGTC
ACTTATGCCACTGTGGAGGAAGTGGATGCAGCCATGAATGCAAGACCACACAAAGTGGATGGTA
GAGTTGTGGAACCAAAGAGAGCTGTCTCACGAGAAGATTCTCAAAGACCAGGGGCCCACTTAAC
TGTGAAAAAGATCTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTACGAGATTAT
TTTGAACAGTATGGGAAAATTGAAGTTATTGAAATCATGACTGACCGAGGCAGTGGAAAGAAAA
GGGGCTTTGCTTTTGTAACTTTTGATGACCATGACTCTGTGGATAAGATTGTCATTCAGAAATA
CCATACTGTGAATGGCCACAACTGTGAAGTGAGGAAAGCCCTATCAAAGCAAGAGATGGCTAGT
GCCTCATCTAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTCGGTGGTGGTCGTGGAGGTGGTT
TTGGTGGAAATGACAATTTTGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAG
TCGTGGTGGTGGTGGATATGGTGGCAGCGGGGATGGCTACAATGGATTTGGTAATGATGGTGGT
TATGGAGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGG
GTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAGG
AGGCGGAGGCGGCTTTGGCGGTGGTAGTGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGAT
TTTGGCAGTTACAACAATCAGTCATCAAATTTTGGACCCATGAAGGGTGGAAACTTTGGAGGCA
GAAGCTCTGGACCTTACGGTGGTGGAGGCCAATATTTTGCCAAACCACGAAACCAAGGTGGCTA
TGGTGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGGTTTTAATACTGCCAGGAAACA
AAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGTG
AACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGGTTTAGACAATA
CTCATGTGTATGGGCAAAAAAACTCGAGGACTGTATTTGTGACTAATTGTATAACAGGTTATTT
TAGTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAGGGTTT

hide sequence

RefSeq Acc Id:

XM_013358441 ⟹ XP_013213895

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	61,679,881 - 61,683,541 (-)	NCBI
SpeTri2.0	NW_004936512	11,481,017 - 11,484,949 (+)	NCBI

Sequence:

show sequence

CGAGGTGAATGTATTATATGGGTGTGGAAGACGAAAAAGGCGTTTACATACCTTGGGTATATTC
AAATATGAATGATTGGCGGGCTAGCCAATCAGACTGGTTAAGAGTAACGTAGCTCAGGCACCAA
TGACTCAAGGGGGCGGGGCTTGCGTAGAACGCCCAAACGGATGACGTTACACAGCAGTACGGAA
CCATAGACCAATAGAAGGAGGAAGTTATTTCAGACAGCCAATCGGAGCTTTGGAGGGGCGGAGT
CTGCCAATGCCAAAAGCGAGGAGGCGGGATAAAAAGGCGAGGCTGAAGGTAGGCTGGTGGATAC
GTTCGTTAGCTTACTCCTTTCTGCCCGTGGACGCCGCCGAGAAAGCATCGTTAAAGTCTGTCTT
CTTGCTGCCGTCATGTCTAAATCAGAGTCCCCTAAAGAGCCCGAACAGCTGCGGAAGCTATTCA
TCGGAGGGCTGAGCTTTGAAACAACTGATGAGAGTCTGAGAAGCCATTTTGAGCAATGGGGAAC
ACTCACGGATTGTGTGGTAATGAGAGATCCAAACACCAAGCGCTCCAGAGGCTTTGGGTTTGTC
ACTTATGCCACTGTGGAGGAAGTGGATGCAGCCATGAATGCAAGACCACACAAAGTGGATGGTA
GAGTTGTGGAACCAAAGAGAGCTGTCTCACGAGAAGATTCTCAAAGACCAGGGGCCCACTTAAC
TGTGAAAAAGATCTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTACGAGATTAT
TTTGAACAGTATGGGAAAATTGAAGTTATTGAAATCATGACTGACCGAGGCAGTGGAAAGAAAA
GGGGCTTTGCTTTTGTAACTTTTGATGACCATGACTCTGTGGATAAGATTGTCATTCAGAAATA
CCATACTGTGAATGGCCACAACTGTGAAGTGAGGAAAGCCCTATCAAAGCAAGAGATGGCTAGT
GCCTCATCTAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTCGGTGGTGGTCGTGGAGGTGGTT
TTGGTGGAAATGACAATTTTGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAG
TCGTGGTGGTGGTGGATATGGTGGCAGCGGGGATGGCTACAATGGATTTGGTAATGATGGTGGT
TATGGAGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGG
GTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAGG
AGGCGGAGGCGGCTTTGGCGGTGGTAGTGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGAT
TTTGGCAGTTACAACAATCAGTCATCAAATTTTGGACCCATGAAGGGTGGAAACTTTGGAGGCA
GAAGCTCTGGACCTTACGGTGGTGGAGGCCAATATTTTGCCAAACCACGAAACCAAGGTGGCTA
TGGTGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGGTTTTAATACTGCCAGGTAAG

hide sequence

RefSeq Acc Id:

XR_001229747

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	61,677,106 - 61,683,541 (-)	NCBI
SpeTri2.0	NW_004936512	11,481,017 - 11,487,737 (+)	NCBI

Sequence:

show sequence

CGAGGTGAATGTATTATATGGGTGTGGAAGACGAAAAAGGCGTTTACATACCTTGGGTATATTC
AAATATGAATGATTGGCGGGCTAGCCAATCAGACTGGTTAAGAGTAACGTAGCTCAGGCACCAA
TGACTCAAGGGGGCGGGGCTTGCGTAGAACGCCCAAACGGATGACGTTACACAGCAGTACGGAA
CCATAGACCAATAGAAGGAGGAAGTTATTTCAGACAGCCAATCGGAGCTTTGGAGGGGCGGAGT
CTGCCAATGCCAAAAGCGAGGAGGCGGGATAAAAAGGCGAGGCTGAAGGTAGGCTGGTGGATAC
GTTCGTTAGCTTACTCCTTTCTGCCCGTGGACGCCGCCGAGAAAGCATCGTTAAAGTCTGTCTT
CTTGCTGCCGTCATGTCTAAATCAGAGTCCCCTAAAGAGCCCGAACAGCTGCGGAAGCTATTCA
TCGGAGGGCTGAGCTTTGAAACAACTGATGAGAGTCTGAGAAGCCATTTTGAGCAATGGGGAAC
ACTCACGGATTGTGTGGTAATGAGAGATCCAAACACCAAGCGCTCCAGAGGCTTTGGGTTTGTC
ACTTATGCCACTGTGGAGGAAGTGGATGCAGCCATGAATGCAAGACCACACAAAGTGGATGGTA
GAGTTGTGGAACCAAAGAGAGCTGTCTCACGAGAAGATTCTCAAAGACCAGGGGCCCACTTAAC
TGTGAAAAAGATCTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTACGAGATTAT
TTTGAACAGTATGGGAAAATTGAAGTTATTGAAATCATGACTGACCGAGGCAGTGGAAAGAAAA
GGGGCTTTGCTTTTGTAACTTTTGATGACCATGACTCTGTGGATAAGATTGTCATTCAGAAATA
CCATACTGTGAATGGCCACAACTGTGAAGTGAGGAAAGCCCTATCAAAGCAAGAGATGGCTAGT
GCCTCATCTAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTCGGTGGTGGTCGTGGAGGTGGTT
TTGGTGGAAATGACAATTTTGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAG
TCGTGGTGGTGGTGGATATGGTGGCAGCGGGGATGGCTACAATGGATTTGGTAATGATGGTGGT
TATGGAGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGG
GTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAGG
AGGCGGAGGCGGCTTTGGCGGTGGTAGTGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGAT
TTTGGCAGTTACAACAATCAGTCATCAAATTTTGGACCCATGAAGGGTGGAAACTTTGGAGGCA
GAAGCTCTGGACCTTACGGTGGTGGAGGCCAATATTTTGCCAAACCACGAAACCAAGGTGGCTA
TGGTGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGGTTTTAATACTGCCAGGAGGAA
TCTGCTACTACAGGCTTATCAGCTCAATTTAAAAAAAAAAAAAAGGCCAGAAACTTCTGTCCAA
GTTCATTGCTAAAGGAACATCCTTGTGAGGACAACCTTTATCTGAGTCAATGTACTTCATTCTC
ACTGCCATGCAGTTGGTTTTTAGCTGCTCTGCAGCTCTGTAATCATTCAATTTTGTGAGTGACT
TTTCTAATAAACTGGGTTGTTGTTGGTTGTCTGTTTTTTTTTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005325133	(Get FASTA)	NCBI Sequence Viewer
	XP_013213894	(Get FASTA)	NCBI Sequence Viewer
	XP_013213895	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000005857.2
	ENSSTOP00000026152.1
	ENSSTOP00000026268.1
GenBank Protein	KAG3291766	(Get FASTA)	NCBI Sequence Viewer
	KAG3291767	(Get FASTA)	NCBI Sequence Viewer
	KAG3291768	(Get FASTA)	NCBI Sequence Viewer
	KAG3291769	(Get FASTA)	NCBI Sequence Viewer
	KAG3291770	(Get FASTA)	NCBI Sequence Viewer
	KAG3291771	(Get FASTA)	NCBI Sequence Viewer
	KAG3291772	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013213894 ⟸ XM_013358440
- Peptide Label:	isoform X1
- UniProtKB:	I3M849 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT VEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSS QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGG GGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGFGGGSGSNFGGGGSYNDFGSY NNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF hide sequence

RefSeq Acc Id:	XP_005325133 ⟸ XM_005325076
- Peptide Label:	isoform X2
- UniProtKB:	A0A287CYB9 (UniProtKB/TrEMBL), A0A287CXW9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT VEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSS QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGG GGSYNDFGSYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF hide sequence

RefSeq Acc Id:	XP_013213895 ⟸ XM_013358441
- Peptide Label:	isoform X1
- UniProtKB:	I3M849 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT VEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSS QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGG GGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGFGGGSGSNFGGGGSYNDFGSY NNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF hide sequence

Protein Domains

RRM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000006551	UniProtKB/TrEMBL
	ENSSTOG00000020987	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000006550.3	UniProtKB/TrEMBL
	ENSSTOT00000026011.2	UniProtKB/TrEMBL
	ENSSTOT00000038364.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	HnRNPA1	UniProtKB/TrEMBL
	hnRNPA1/3_RRM2	UniProtKB/TrEMBL
	hnRNPA1_RRM1	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
NCBI Gene	Hnrnpa1	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1-RELATED	UniProtKB/TrEMBL
	HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN	UniProtKB/TrEMBL
Pfam	HnRNPA1	UniProtKB/TrEMBL
	RRM_1	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A287CXW9	ENTREZGENE, UniProtKB/TrEMBL
	A0A287CYB9	ENTREZGENE, UniProtKB/TrEMBL
	I3M849	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

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