TOP1 (DNA topoisomerase I) - Rat Genome Database

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Gene: TOP1 (DNA topoisomerase I) Canis lupus familiaris
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Symbol: TOP1
Name: DNA topoisomerase I
RGD ID: 12411664
Description: ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA binding (ortholog); DNA binding, bending (ortholog); INVOLVED IN animal organ regeneration (ortholog); cellular response to luteinizing hormone stimulus (ortholog); DNA replication (ortholog); PARTICIPATES IN irinotecan pharmacodynamics pathway; irinotecan pharmacokinetics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); disease of cellular proliferation (ortholog); Disease Progression (ortholog); FOUND IN dense fibrillar component (ortholog); fibrillar center (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA topoisomerase 1; TOP; topoisomerase (DNA) I; topoisomerase I
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12429,075,267 - 29,166,733 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2429,075,492 - 29,165,864 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2428,720,984 - 28,812,380 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02429,781,234 - 29,872,485 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2429,781,498 - 29,872,296 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12429,049,969 - 29,141,401 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02429,153,861 - 29,245,250 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02429,650,217 - 29,741,420 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:10331940   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TOP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12429,075,267 - 29,166,733 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2429,075,492 - 29,165,864 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2428,720,984 - 28,812,380 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02429,781,234 - 29,872,485 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2429,781,498 - 29,872,296 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12429,049,969 - 29,141,401 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02429,153,861 - 29,245,250 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02429,650,217 - 29,741,420 (+)NCBIUU_Cfam_GSD_1.0
TOP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382041,028,822 - 41,124,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2041,028,822 - 41,124,487 (+)EnsemblGRCh38hg38GRCh38
GRCh372039,657,462 - 39,753,127 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362039,090,876 - 39,186,541 (+)NCBINCBI36Build 36hg18NCBI36
Build 342039,090,875 - 39,186,541NCBI
Celera2036,368,028 - 36,463,696 (+)NCBICelera
Cytogenetic Map20q12NCBI
HuRef2036,395,468 - 36,491,177 (+)NCBIHuRef
CHM1_12039,561,887 - 39,657,539 (+)NCBICHM1_1
T2T-CHM13v2.02042,760,511 - 42,856,164 (+)NCBIT2T-CHM13v2.0
Top1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392160,487,901 - 160,564,684 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2160,487,808 - 160,564,684 (+)EnsemblGRCm39 Ensembl
GRCm382160,645,897 - 160,722,764 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2160,645,888 - 160,722,764 (+)EnsemblGRCm38mm10GRCm38
MGSCv372160,471,633 - 160,548,500 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362160,337,671 - 160,414,152 (+)NCBIMGSCv36mm8
Celera2166,577,915 - 166,654,823 (+)NCBICelera
Cytogenetic Map2H2NCBI
cM Map280.96NCBI
Top1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83169,713,195 - 169,796,330 (+)NCBIGRCr8
mRatBN7.23149,293,469 - 149,376,618 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3149,293,403 - 149,376,623 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3153,107,309 - 153,188,513 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03161,606,688 - 161,687,898 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03159,345,818 - 159,427,549 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03156,635,688 - 156,717,686 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3156,642,464 - 156,717,686 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03162,865,335 - 162,947,076 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43151,428,931 - 151,512,884 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13151,334,966 - 151,418,920 (+)NCBI
Celera3147,968,261 - 148,049,789 (+)NCBICelera
Cytogenetic Map3q42NCBI
Top1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544515,834,017 - 15,922,785 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544515,834,017 - 15,922,785 (-)NCBIChiLan1.0ChiLan1.0
TOP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22146,769,898 - 46,866,351 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12046,762,969 - 46,859,450 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02037,368,606 - 37,464,649 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12038,468,197 - 38,563,842 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2038,468,452 - 38,562,652 (+)Ensemblpanpan1.1panPan2
Top1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640178,026,161 - 178,108,033 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936561641,423 - 723,518 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936561641,451 - 723,323 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TOP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1743,710,290 - 43,799,700 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11743,710,270 - 43,799,700 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21749,135,554 - 49,193,582 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TOP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1222,655,085 - 22,751,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl222,651,995 - 22,751,102 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605071,467,009 - 71,562,443 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Top1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249191,668,440 - 1,756,629 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249191,668,712 - 1,756,624 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TOP1
828 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000014397   ⟹   ENSCAFP00000013314
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2429,075,492 - 29,165,864 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845053140   ⟹   ENSCAFP00845041728
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2429,781,498 - 29,872,296 (+)Ensembl
RefSeq Acc Id: XM_038433832   ⟹   XP_038289760
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02429,781,234 - 29,872,485 (+)NCBI
RefSeq Acc Id: XM_038508978   ⟹   XP_038364906
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12429,049,969 - 29,141,401 (+)NCBI
RefSeq Acc Id: XM_038572316   ⟹   XP_038428244
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02429,650,217 - 29,741,420 (+)NCBI
RefSeq Acc Id: XM_038636569   ⟹   XP_038492497
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02429,153,861 - 29,245,250 (+)NCBI
RefSeq Acc Id: XM_534420   ⟹   XP_534420
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12429,075,267 - 29,166,733 (+)NCBI
Dog10K_Boxer_Tasha2428,720,984 - 28,812,380 (+)NCBI
Sequence:
RefSeq Acc Id: XP_534420   ⟸   XM_534420
- UniProtKB: A0A8C0T9U8 (UniProtKB/TrEMBL),   A0A8P0SE48 (UniProtKB/TrEMBL),   A0A8C0KFK0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000013314   ⟸   ENSCAFT00000014397
RefSeq Acc Id: XP_038364906   ⟸   XM_038508978
RefSeq Acc Id: XP_038492497   ⟸   XM_038636569
RefSeq Acc Id: XP_038289760   ⟸   XM_038433832
- UniProtKB: A0A8C0MIF6 (UniProtKB/TrEMBL),   A0A8I3SCI3 (UniProtKB/TrEMBL),   A0A8C0KFK0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428244   ⟸   XM_038572316
- UniProtKB: A0A8C0KFK0 (UniProtKB/TrEMBL),   A0A8C0T9U8 (UniProtKB/TrEMBL),   A0A8P0SE48 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845041728   ⟸   ENSCAFT00845053140
Promoters
RGD ID:13687611
Promoter ID:EPDNEW_C5679
Type:initiation region
Name:TOP1_1
Description:DNA topoisomerase I
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12429,075,245 - 29,075,305EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009058 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006067 UniProtKB/TrEMBL
  ENSCAFG00040020114 UniProtKB/TrEMBL
  ENSCAFG00845029978 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000014397.5 UniProtKB/TrEMBL
  ENSCAFT00030011272.1 UniProtKB/TrEMBL
  ENSCAFT00040037318.1 UniProtKB/TrEMBL
  ENSCAFT00845053140 ENTREZGENE
  ENSCAFT00845053140.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.41 UniProtKB/TrEMBL
  1.10.132.10 UniProtKB/TrEMBL
  2.170.11.10 UniProtKB/TrEMBL
  Topoisomerase I, Chain A, domain 3 UniProtKB/TrEMBL
InterPro DNA_brk_join_enz UniProtKB/TrEMBL
  DNA_topo_DNA_db_N_dom1 UniProtKB/TrEMBL
  DNA_topo_DNA_db_N_dom2 UniProtKB/TrEMBL
  TopoI UniProtKB/TrEMBL
  TopoI_AS UniProtKB/TrEMBL
  TopoI_C_dom UniProtKB/TrEMBL
  TopoI_cat_a-hlx-sub_euk UniProtKB/TrEMBL
  TopoI_cat_a/b-sub_euk UniProtKB/TrEMBL
  TopoI_cat_euk UniProtKB/TrEMBL
  TopoI_DNA-bd_euk UniProtKB/TrEMBL
  TopoI_DNA-bd_euk_N_sf UniProtKB/TrEMBL
  TopoI_euk UniProtKB/TrEMBL
  Topoisomer_I_DNA-bd UniProtKB/TrEMBL
  Topoisomerase_IB UniProtKB/TrEMBL
KEGG Report cfa:477229 UniProtKB/TrEMBL
NCBI Gene TOP1 ENTREZGENE
PANTHER DNA TOPOISOMERASE 1 UniProtKB/TrEMBL
  DNA TOPOISOMERASE I UniProtKB/TrEMBL
Pfam Topo_C_assoc UniProtKB/TrEMBL
  Topoisom_I UniProtKB/TrEMBL
  Topoisom_I_N UniProtKB/TrEMBL
PRINTS EUTPISMRASEI UniProtKB/TrEMBL
PROSITE TOPOISOMERASE_I_EUK UniProtKB/TrEMBL
SMART TOPEUc UniProtKB/TrEMBL
Superfamily-SCOP Eukaryotic DNA topoisomerase I, dispensable insert domain UniProtKB/TrEMBL
  SSF56349 UniProtKB/TrEMBL
  SSF56741 UniProtKB/TrEMBL
UniProt A0A8C0KFK0 ENTREZGENE
  A0A8C0MIF6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T9U8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3SCI3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SE48 ENTREZGENE
UniProt Secondary A0A8P0SE48 UniProtKB/TrEMBL
VGNC ID VGNC:49631 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-08 TOP1  DNA topoisomerase I    topoisomerase (DNA) I  Symbol and/or name change 5135510 APPROVED