ATP6V1F (ATPase H+ transporting V1 subunit F) - Rat Genome Database

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Gene: ATP6V1F (ATPase H+ transporting V1 subunit F) Canis lupus familiaris
Analyze
Symbol: ATP6V1F
Name: ATPase H+ transporting V1 subunit F
RGD ID: 12404150
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN proton transmembrane transport (inferred); synaptic vesicle lumen acidification (inferred); ASSOCIATED WITH autosomal dominant limb-girdle muscular dystrophy type 2 (ortholog); COVID-19 (ortholog); myofibrillar myopathy 5 (ortholog); FOUND IN extrinsic component of synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit F
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,786,841 - 7,789,584 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,786,844 - 7,789,548 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha147,473,699 - 7,476,441 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,552,723 - 7,555,466 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,552,726 - 7,555,430 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,757,752 - 7,760,490 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,499,763 - 7,502,507 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,645,178 - 7,647,919 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V1F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,786,841 - 7,789,584 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,786,844 - 7,789,548 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha147,473,699 - 7,476,441 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,552,723 - 7,555,466 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,552,726 - 7,555,430 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,757,752 - 7,760,490 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,499,763 - 7,502,507 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,645,178 - 7,647,919 (-)NCBIUU_Cfam_GSD_1.0
ATP6V1F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387128,862,856 - 128,865,847 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7128,862,856 - 128,865,847 (+)EnsemblGRCh38hg38GRCh38
GRCh377128,502,910 - 128,505,901 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367128,290,134 - 128,293,138 (+)NCBINCBI36Build 36hg18NCBI36
Build 347128,096,848 - 128,099,853NCBI
Celera7123,299,412 - 123,302,416 (+)NCBICelera
Cytogenetic Map7q32.1NCBI
HuRef7122,864,496 - 122,867,540 (+)NCBIHuRef
CHM1_17128,436,151 - 128,439,197 (+)NCBICHM1_1
T2T-CHM13v2.07130,175,783 - 130,178,774 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27127,886,602 - 127,889,648 (+)NCBI
Atp6v1f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,467,782 - 29,470,508 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl629,467,717 - 29,470,511 (+)EnsemblGRCm39 Ensembl
GRCm38629,467,783 - 29,470,509 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,467,718 - 29,470,512 (+)EnsemblGRCm38mm10GRCm38
MGSCv37629,417,783 - 29,420,509 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36629,417,793 - 29,420,519 (+)NCBIMGSCv36mm8
Celera629,475,661 - 29,478,387 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.36NCBI
Atp6v1f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8459,033,020 - 59,035,980 (+)NCBIGRCr8
mRatBN7.2458,067,666 - 58,070,628 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx463,050,712 - 63,053,652 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0458,966,874 - 58,969,814 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0457,368,753 - 57,371,693 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0456,744,563 - 56,747,657 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl456,744,561 - 56,747,656 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0456,511,724 - 56,514,818 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,347,184 - 56,350,085 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1456,605,455 - 56,609,468 (+)NCBI
Celera453,175,569 - 53,178,529 (+)NCBICelera
Cytogenetic Map4q22NCBI
Atp6v1f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554799,664,574 - 9,667,667 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554799,664,574 - 9,667,667 (+)NCBIChiLan1.0ChiLan1.0
ATP6V1F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26165,667,153 - 165,670,444 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1717,677,399 - 17,680,690 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07120,814,560 - 120,817,612 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17133,339,279 - 133,342,423 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7133,339,284 - 133,342,423 (+)Ensemblpanpan1.1panPan2
Atp6v1f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511854,663,836 - 54,666,585 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647915,787,629 - 15,790,265 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647915,787,609 - 15,790,354 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,753,506 - 19,756,648 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,753,761 - 19,756,706 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21820,885,979 - 20,888,924 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,464,741 - 97,467,749 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2197,464,146 - 97,468,370 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660425,934,352 - 5,937,781 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v1f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247837,328,113 - 7,331,666 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247837,328,113 - 7,331,648 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP6V1F
29 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000002545   ⟹   ENSCAFP00000002364
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl147,786,844 - 7,789,548 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845039417   ⟹   ENSCAFP00845030888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl147,552,726 - 7,555,430 (-)Ensembl
RefSeq Acc Id: XM_005628412   ⟹   XP_005628469
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1147,786,841 - 7,789,584 (-)NCBI
Dog10K_Boxer_Tasha147,473,699 - 7,476,441 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038494274   ⟹   XP_038350202
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1147,757,752 - 7,760,490 (-)NCBI
RefSeq Acc Id: XM_038556573   ⟹   XP_038412501
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0147,645,178 - 7,647,919 (-)NCBI
RefSeq Acc Id: XM_038620503   ⟹   XP_038476431
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0147,499,763 - 7,502,507 (-)NCBI
RefSeq Acc Id: XM_038686190   ⟹   XP_038542118
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0147,552,723 - 7,555,466 (-)NCBI
RefSeq Acc Id: XP_005628469   ⟸   XM_005628412
- UniProtKB: A0A8C0PFQ2 (UniProtKB/TrEMBL),   A0A8C0R5W1 (UniProtKB/TrEMBL),   A0A8I3PF77 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000002364   ⟸   ENSCAFT00000002545
RefSeq Acc Id: XP_038350202   ⟸   XM_038494274
RefSeq Acc Id: XP_038476431   ⟸   XM_038620503
RefSeq Acc Id: XP_038542118   ⟸   XM_038686190
- UniProtKB: A0A8C0PFQ2 (UniProtKB/TrEMBL),   A0A8C0R5W1 (UniProtKB/TrEMBL),   A0A8I3PF77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412501   ⟸   XM_038556573
- UniProtKB: A0A8C0PFQ2 (UniProtKB/TrEMBL),   A0A8C0R5W1 (UniProtKB/TrEMBL),   A0A8I3PF77 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845030888   ⟸   ENSCAFT00845039417

Promoters
RGD ID:13685712
Promoter ID:EPDNEW_C3778
Type:multiple initiation site
Name:ATP6V1F_1
Description:ATPase H+ transporting V1 subunit F
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1147,789,498 - 7,789,558EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001620 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025430 UniProtKB/TrEMBL
  ENSCAFG00040013577 UniProtKB/TrEMBL
  ENSCAFG00845022337 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000002545.5 UniProtKB/TrEMBL
  ENSCAFT00030046962.1 UniProtKB/TrEMBL
  ENSCAFT00040025064.1 UniProtKB/TrEMBL
  ENSCAFT00845039417 ENTREZGENE
  ENSCAFT00845039417.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10580 UniProtKB/TrEMBL
InterPro ATPase_V1-cplx_f_g_su UniProtKB/TrEMBL
  ATPase_V1-cplx_fsu_euk UniProtKB/TrEMBL
  ATPase_V1_fsu_sf UniProtKB/TrEMBL
KEGG Report cfa:475199 UniProtKB/TrEMBL
NCBI Gene ATP6V1F ENTREZGENE
PANTHER V-TYPE PROTON ATPASE SUBUNIT F UniProtKB/TrEMBL
  VACUOLAR ATP SYNTHASE SUBUNIT F UniProtKB/TrEMBL
Pfam ATP-synt_F UniProtKB/TrEMBL
PIRSF ATPase_V1_F_euk UniProtKB/TrEMBL
Superfamily-SCOP SSF159468 UniProtKB/TrEMBL
UniProt A0A8C0PFQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R5W1 ENTREZGENE
  A0A8I3PF77 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38282 ENTREZGENE