SLC25A24 (solute carrier family 25 member 24) - Rat Genome Database

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Gene: SLC25A24 (solute carrier family 25 member 24) Canis lupus familiaris
Analyze
Symbol: SLC25A24
Name: solute carrier family 25 member 24
RGD ID: 12403970
Description: ENCODES a protein that exhibits adenine nucleotide transmembrane transporter activity (ortholog); ADP:phosphate antiporter activity (ortholog); ATP:phosphate antiporter activity (ortholog); INVOLVED IN adenine nucleotide transport (ortholog); cellular response to calcium ion (ortholog); cellular response to oxidative stress (ortholog); ASSOCIATED WITH autistic disorder (ortholog); dementia (ortholog); epilepsy with generalized tonic-clonic seizures (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium-binding mitochondrial carrier protein SCaMC-1; LOC611922; solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1643,424,079 - 43,476,861 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha646,210,128 - 46,258,231 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0643,702,936 - 43,751,242 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl643,629,062 - 43,751,221 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1643,437,348 - 43,485,546 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0643,407,742 - 43,455,905 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0643,837,016 - 43,885,217 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC25A24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1643,424,079 - 43,476,861 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha646,210,128 - 46,258,231 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0643,702,936 - 43,751,242 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl643,629,062 - 43,751,221 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1643,437,348 - 43,485,546 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0643,407,742 - 43,455,905 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0643,837,016 - 43,885,217 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
SLC25A24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381108,134,043 - 108,200,343 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1108,134,043 - 108,200,849 (-)Ensemblhg38GRCh38
GRCh371108,676,665 - 108,742,965 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361108,478,968 - 108,544,497 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1106,852,157 - 106,917,679 (-)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1106,622,931 - 106,688,475 (-)NCBIHuRef
CHM1_11108,792,122 - 108,857,831 (-)NCBICHM1_1
T2T-CHM13v2.01108,171,581 - 108,233,988 (-)NCBIT2T-CHM13v2.0
Slc25a24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393109,030,465 - 109,075,725 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3109,030,465 - 109,075,773 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm383109,123,149 - 109,168,409 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3109,123,149 - 109,168,457 (+)Ensemblmm10GRCm38
MGSCv373108,926,067 - 108,971,327 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363109,251,205 - 109,296,465 (+)NCBIMGSCv36mm8
Celera3111,461,243 - 111,503,231 (+)NCBICelera
Cytogenetic Map3F3NCBI
cM Map348.13NCBI
Slc25a24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82199,449,425 - 199,487,287 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2199,449,345 - 199,487,290 (+)EnsemblGRCr8
mRatBN7.22196,761,076 - 196,799,236 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2196,761,274 - 196,799,231 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2204,410,850 - 204,449,462 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02202,293,245 - 202,331,158 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02197,110,318 - 197,148,230 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02211,930,371 - 211,967,511 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,930,326 - 211,967,505 (+)Ensemblrn6Rnor6.0
Rnor_5.02231,401,404 - 231,438,472 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42204,721,524 - 204,760,766 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2189,410,120 - 189,446,854 (+)NCBICelera
RGSC_v3.12204,633,416 - 204,721,846 (+)NCBI
Cytogenetic Map2q41NCBI
Slc25a24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543511,895,405 - 11,933,153 (-)Ensembl
ChiLan1.0NW_00495543511,895,475 - 11,933,153 (-)NCBIChiLan1.0ChiLan1.0
LOC100990756
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,942,780 - 119,009,026 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11118,106,687 - 118,172,373 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01110,672,168 - 110,736,204 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11109,786,563 - 109,850,397 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1109,786,563 - 109,850,397 (-)EnsemblpanPan2panpan1.1
Slc25a24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058117,354,096 - 117,404,929 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936731173,337 - 224,239 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936731173,366 - 224,156 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4111,579,663 - 111,634,266 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.14111,580,186 - 111,632,390 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24122,094,478 - 122,127,835 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12025,403,045 - 25,460,123 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603832,789,470 - 32,846,389 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247724,278,655 - 4,324,510 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247724,280,055 - 4,324,403 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC25A24
681 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845015834   ⟹   ENSCAFP00845012317
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl643,629,062 - 43,751,221 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845015922   ⟹   ENSCAFP00845012390
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl643,629,062 - 43,751,221 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845015986   ⟹   ENSCAFP00845012435
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl643,629,062 - 43,678,423 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845016038   ⟹   ENSCAFP00845012471
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl643,629,062 - 43,656,982 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845016060   ⟹   ENSCAFP00845012488
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl643,667,056 - 43,751,221 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845016088   ⟹   ENSCAFP00845012512
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl643,702,721 - 43,751,221 (+)Ensembl
RefSeq Acc Id: XM_038479881   ⟹   XP_038335809
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1643,437,348 - 43,485,546 (+)NCBI
RefSeq Acc Id: XM_038541163   ⟹   XP_038397091
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0643,837,016 - 43,885,217 (+)NCBI
RefSeq Acc Id: XM_038553262   ⟹   XP_038409190
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha646,210,128 - 46,258,231 (+)NCBI
RefSeq Acc Id: XM_038605317   ⟹   XP_038461245
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0643,407,742 - 43,455,905 (+)NCBI
RefSeq Acc Id: XM_038669965   ⟹   XP_038525893
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0643,702,936 - 43,751,242 (+)NCBI
RefSeq Acc Id: XP_038335809   ⟸   XM_038479881
RefSeq Acc Id: XP_038461245   ⟸   XM_038605317
RefSeq Acc Id: XP_038525893   ⟸   XM_038669965
- UniProtKB: A0A8C0KB95 (UniProtKB/TrEMBL),   A0A8C0PKI0 (UniProtKB/TrEMBL),   A0A8I3NMB9 (UniProtKB/TrEMBL),   A0A8C0KDM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409190   ⟸   XM_038553262
- UniProtKB: A0A8C0KB95 (UniProtKB/TrEMBL),   A0A8C0PKI0 (UniProtKB/TrEMBL),   A0A8I3NMB9 (UniProtKB/TrEMBL),   A0A8C0KDM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397091   ⟸   XM_038541163
- UniProtKB: A0A8C0KB95 (UniProtKB/TrEMBL),   A0A8C0KDM4 (UniProtKB/TrEMBL),   A0A8C0PKI0 (UniProtKB/TrEMBL),   A0A8I3NMB9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845012317   ⟸   ENSCAFT00845015834
Ensembl Acc Id: ENSCAFP00845012471   ⟸   ENSCAFT00845016038
Ensembl Acc Id: ENSCAFP00845012512   ⟸   ENSCAFT00845016088
Ensembl Acc Id: ENSCAFP00845012435   ⟸   ENSCAFT00845015986
Ensembl Acc Id: ENSCAFP00845012390   ⟸   ENSCAFT00845015922
Ensembl Acc Id: ENSCAFP00845012488   ⟸   ENSCAFT00845016060
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000041140 UniProtKB/TrEMBL
  ENSCAFG00040000298 UniProtKB/TrEMBL
  ENSCAFG00845008970 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000109909.1 UniProtKB/TrEMBL
  ENSCAFT00040000548.1 UniProtKB/TrEMBL
  ENSCAFT00845015834.1 UniProtKB/TrEMBL
  ENSCAFT00845015922.1 UniProtKB/TrEMBL
  ENSCAFT00845016038.1 UniProtKB/TrEMBL
  ENSCAFT00845016060.1 UniProtKB/TrEMBL
  ENSCAFT00845016088 ENTREZGENE
  ENSCAFT00845016088.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Graves_DC UniProtKB/TrEMBL
  Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC611922 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 25 UniProtKB/TrEMBL
Pfam EF-hand_5 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
  EF-hand_8 UniProtKB/TrEMBL
  Mito_carr UniProtKB/TrEMBL
PRINTS GRAVESDC UniProtKB/TrEMBL
  MITOCARRIER UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  SOLCAR UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt A0A8C0KB95 ENTREZGENE
  A0A8C0KDM4 ENTREZGENE
  A0A8C0PKI0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N0Y2_CANLF UniProtKB/TrEMBL
  A0A8I3N144_CANLF UniProtKB/TrEMBL
  A0A8I3N5U7_CANLF UniProtKB/TrEMBL
  A0A8I3NMA1_CANLF UniProtKB/TrEMBL
  A0A8I3NMB9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:54068 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-04-10 SLC25A24  solute carrier family 25 member 24  LOC611922  calcium-binding mitochondrial carrier protein SCaMC-1  Symbol and/or name change 5135510 APPROVED