MIR342 (microRNA mir-342) - Rat Genome Database

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Gene: MIR342 (microRNA mir-342) Canis lupus familiaris
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Symbol: MIR342
Name: microRNA mir-342
RGD ID: 12394377
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-342; microRNA 342
RGD Orthologs
Human
Mouse
Rat
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1868,424,656 - 68,424,718 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha867,945,921 - 67,945,983 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0868,710,010 - 68,710,072 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl868,710,010 - 68,710,072 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1868,372,074 - 68,372,136 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0868,437,401 - 68,437,463 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0868,835,077 - 68,835,139 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:16381832   PMID:18392026  


Genomics

Comparative Map Data
MIR342
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1868,424,656 - 68,424,718 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha867,945,921 - 67,945,983 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0868,710,010 - 68,710,072 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl868,710,010 - 68,710,072 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1868,372,074 - 68,372,136 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0868,437,401 - 68,437,463 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0868,835,077 - 68,835,139 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
MIR342
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814100,109,655 - 100,109,753 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14100,109,655 - 100,109,753 (+)Ensemblhg38GRCh38
GRCh3714100,575,992 - 100,576,090 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,645,744 - 99,645,842 (+)NCBIBuild 36Build 36hg18NCBI36
Cytogenetic Map14q32.2NCBI
HuRef1480,758,182 - 80,758,280 (+)NCBIHuRef
CHM1_114100,513,730 - 100,513,828 (+)NCBICHM1_1
T2T-CHM13v2.01494,342,703 - 94,342,801 (+)NCBIT2T-CHM13v2.0
Mir342
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,624,879 - 108,624,977 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12108,624,879 - 108,624,977 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3812108,658,620 - 108,658,718 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,658,620 - 108,658,718 (+)Ensemblmm10GRCm38
MGSCv3712109,896,830 - 109,896,928 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
Celera12109,894,801 - 109,894,899 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1259.46NCBI
Mir342
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86133,329,655 - 133,329,753 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6133,329,655 - 133,329,753 (+)EnsemblGRCr8
mRatBN7.26127,565,269 - 127,565,367 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6127,565,269 - 127,565,367 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6127,689,383 - 127,689,481 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06127,984,442 - 127,984,540 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06127,342,548 - 127,342,646 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06132,561,169 - 132,561,267 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6132,561,169 - 132,561,267 (+)Ensemblrn6Rnor6.0
Rnor_5.06141,731,245 - 141,731,343 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera6125,120,277 - 125,120,375 (+)NCBICelera
Cytogenetic Map6q32NCBI
MIR342
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7121,021,761 - 121,021,840 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.17121,021,761 - 121,021,840 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1

Variants

.
Variants in MIR342
1 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845007587
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl868,710,010 - 68,710,072 (+)Ensembl
RefSeq Acc Id: NR_049354
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1868,424,656 - 68,424,718 (+)NCBI
Dog10K_Boxer_Tasha867,945,921 - 67,945,983 (+)NCBI
ROS_Cfam_1.0868,710,010 - 68,710,072 (+)NCBI
UMICH_Zoey_3.1868,372,074 - 68,372,136 (+)NCBI
UNSW_CanFamBas_1.0868,437,401 - 68,437,463 (+)NCBI
UU_Cfam_GSD_1.0868,835,077 - 68,835,139 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845004228 Ensembl, ENTREZGENE
Ensembl Transcript ENSCAFT00845007587 ENTREZGENE
miRBase MI0008128 ENTREZGENE
NCBI Gene MIR342 ENTREZGENE
RNAcentral URS0000148B91 RNACentral
  URS00007E4E8E RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR342  microRNA mir-342    microRNA 342  Symbol and/or name change 5135510 APPROVED