LOC102152013 (zinc finger protein 850-like) - Rat Genome Database

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Gene: LOC102152013 (zinc finger protein 850-like) Canis lupus familiaris
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Symbol: LOC102152013
Name: zinc finger protein 850-like
RGD ID: 12393837
Description: ENCODES a protein that exhibits metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative uncharacterized zinc finger protein 814; zinc finger protein 271-like; zinc finger protein 814-like
RGD Orthologs
Human
Bonobo
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11100,172,547 - 100,194,298 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1100,531,216 - 100,551,966 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01100,818,143 - 100,838,900 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11100,487,190 - 100,507,936 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01100,174,359 - 100,195,107 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01100,929,928 - 100,950,669 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IBA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC102152013
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11100,172,547 - 100,194,298 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1100,531,216 - 100,551,966 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01100,818,143 - 100,838,900 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11100,487,190 - 100,507,936 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01100,174,359 - 100,195,107 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01100,929,928 - 100,950,669 (+)NCBIUU_Cfam_GSD_1.0
ZNF814
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381957,869,381 - 57,905,128 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1957,848,731 - 57,889,074 (-)EnsemblGRCh38hg38GRCh38
GRCh371958,380,749 - 58,400,405 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,072,131 - 63,092,226 (-)NCBINCBI36Build 36hg18NCBI36
Celera1955,424,234 - 55,443,924 (-)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1954,692,031 - 54,711,760 (-)NCBIHuRef
CHM1_11958,374,608 - 58,394,298 (-)NCBICHM1_1
T2T-CHM13v2.01960,965,622 - 61,002,049 (-)NCBIT2T-CHM13v2.0
LOC100967321
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22064,144,132 - 64,195,958 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11965,936,522 - 65,984,342 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01954,885,077 - 54,928,742 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11963,712,623 - 63,729,258 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC100737912
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1662,525,271 - 62,548,171 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,125,712 - 57,144,653 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF814
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,205,582 - 50,222,988 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660453,461,953 - 3,478,877 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC102152013
127 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005616032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022426711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022426714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038527460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038527461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038655552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038655553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005616032   ⟹   XP_005616089
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11100,172,547 - 100,194,298 (+)NCBI
Dog10K_Boxer_Tasha1100,531,216 - 100,551,966 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022426714   ⟹   XP_022282422
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11100,172,547 - 100,194,298 (+)NCBI
Dog10K_Boxer_Tasha1100,531,216 - 100,551,966 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038466782   ⟹   XP_038322710
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11100,487,190 - 100,507,936 (+)NCBI
RefSeq Acc Id: XM_038466783   ⟹   XP_038322711
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11100,487,190 - 100,507,936 (+)NCBI
RefSeq Acc Id: XM_038527460   ⟹   XP_038383388
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01100,929,928 - 100,950,669 (+)NCBI
RefSeq Acc Id: XM_038527461   ⟹   XP_038383389
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01100,929,928 - 100,950,669 (+)NCBI
RefSeq Acc Id: XM_038591800   ⟹   XP_038447728
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01100,174,359 - 100,195,107 (+)NCBI
RefSeq Acc Id: XM_038591801   ⟹   XP_038447729
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01100,174,359 - 100,195,107 (+)NCBI
RefSeq Acc Id: XM_038655552   ⟹   XP_038511480
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01100,818,143 - 100,838,900 (+)NCBI
RefSeq Acc Id: XM_038655553   ⟹   XP_038511481
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01100,818,143 - 100,838,900 (+)NCBI
RefSeq Acc Id: XP_005616089   ⟸   XM_005616032
- Peptide Label: isoform X1
- UniProtKB: A0A8C0R972 (UniProtKB/TrEMBL),   A0A8I3RPL6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022282422   ⟸   XM_022426714
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_038322710   ⟸   XM_038466782
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038322711   ⟸   XM_038466783
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038447728   ⟸   XM_038591800
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038447729   ⟸   XM_038591801
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038511480   ⟸   XM_038655552
- Peptide Label: isoform X1
- UniProtKB: A0A8C0R972 (UniProtKB/TrEMBL),   A0A8I3RPL6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038511481   ⟸   XM_038655553
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038383388   ⟸   XM_038527460
- Peptide Label: isoform X1
- UniProtKB: A0A8C0R972 (UniProtKB/TrEMBL),   A0A8I3RPL6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038383389   ⟸   XM_038527461
- Peptide Label: isoform X2
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000059382 UniProtKB/TrEMBL
  ENSCAFG00030000119 UniProtKB/TrEMBL
  ENSCAFG00845001031 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000097535.1 UniProtKB/TrEMBL
  ENSCAFT00030000156.1 UniProtKB/TrEMBL
  ENSCAFT00030000160.1 UniProtKB/TrEMBL
  ENSCAFT00845001760 ENTREZGENE
  ENSCAFT00845001760.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report cfa:102152013 UniProtKB/TrEMBL
NCBI Gene LOC102152013 ENTREZGENE
PANTHER KRAB AND ZINC FINGER DOMAIN-CONTAINING UniProtKB/TrEMBL
  SIMILAR TO ZINC FINGER PROTEIN 84 (HPF2) UniProtKB/TrEMBL
  ZFP617 PROTEIN-RELATED UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8C0LVJ1_CANLF UniProtKB/TrEMBL
  A0A8C0R972 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RPL6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 LOC102152013  zinc finger protein 850-like    putative uncharacterized zinc finger protein 814  Symbol and/or name change 5135510 APPROVED