IL1RL1 (interleukin 1 receptor like 1) - Rat Genome Database

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Gene: IL1RL1 (interleukin 1 receptor like 1) Canis lupus familiaris
Analyze
Symbol: IL1RL1
Name: interleukin 1 receptor like 1 (Ensembl:interleukin 18 receptor 1)
RGD ID: 12363067
Description: ENCODES a protein that exhibits interleukin-33 binding (ortholog); interleukin-33 receptor activity (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); cellular response to peptide (ortholog); interleukin-33-mediated signaling pathway (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); acute myocardial infarction (ortholog); Acute-On-Chronic Liver Failure (ortholog); FOUND IN cell surface (ortholog); cytosol (ortholog); external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin-1 receptor-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11040,658,191 - 40,732,097 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1040,659,041 - 40,677,357 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1040,584,086 - 40,603,254 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01041,524,636 - 41,543,860 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1041,481,796 - 41,559,352 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11041,239,090 - 41,258,271 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01041,520,373 - 41,539,587 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01041,712,710 - 41,731,892 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IL1RL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11040,658,191 - 40,732,097 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1040,659,041 - 40,677,357 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1040,584,086 - 40,603,254 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01041,524,636 - 41,543,860 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1041,481,796 - 41,559,352 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11041,239,090 - 41,258,271 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01041,520,373 - 41,539,587 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01041,712,710 - 41,731,892 (-)NCBIUU_Cfam_GSD_1.0
IL1RL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382102,311,563 - 102,352,356 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2102,311,502 - 102,352,037 (+)EnsemblGRCh38hg38GRCh38
GRCh372102,928,023 - 102,968,497 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362102,294,394 - 102,334,929 (+)NCBINCBI36Build 36hg18NCBI36
Build 342102,412,234 - 102,419,698NCBI
Celera297,129,200 - 97,169,642 (+)NCBICelera
Cytogenetic Map2q12.1NCBI
HuRef296,692,020 - 96,732,452 (+)NCBIHuRef
CHM1_12102,932,225 - 102,972,834 (+)NCBICHM1_1
T2T-CHM13v2.02102,769,811 - 102,810,635 (+)NCBIT2T-CHM13v2.0
Il1rl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39140,444,105 - 40,504,575 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl140,468,730 - 40,504,575 (+)EnsemblGRCm39 Ensembl
GRCm38140,404,864 - 40,465,418 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl140,429,570 - 40,465,415 (+)EnsemblGRCm38mm10GRCm38
MGSCv37140,496,494 - 40,522,260 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36140,384,308 - 40,409,958 (+)NCBIMGSCv36mm8
Celera140,251,783 - 40,277,425 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map119.19NCBI
Il1rl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8950,157,326 - 50,222,888 (+)NCBIGRCr8
mRatBN7.2942,661,694 - 42,727,266 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl942,697,192 - 42,727,256 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx951,179,169 - 51,227,104 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0956,301,859 - 56,349,792 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0954,577,363 - 54,625,421 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0947,133,483 - 47,184,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl947,134,034 - 47,182,170 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0946,818,236 - 46,866,589 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4939,577,879 - 39,624,781 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1939,610,600 - 39,618,735 (+)NCBI
Celera940,421,404 - 40,468,339 (+)NCBICelera
RH 3.4 Map9420.09RGD
Cytogenetic Map9q22NCBI
Il1rl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554707,779,828 - 7,849,157 (+)NCBIChiLan1.0ChiLan1.0
IL1RL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21225,353,603 - 25,368,702 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A25,356,789 - 25,371,496 (-)NCBINHGRI_mPanPan1
Il1rl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629290,097,610 - 90,128,649 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367131,021,044 - 1,035,039 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367131,020,969 - 1,035,012 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL1RL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl351,846,792 - 51,951,383 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1351,868,549 - 51,902,454 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2354,483,076 - 54,567,410 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL1RL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1145,966,551 - 6,020,391 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl146,005,061 - 6,020,265 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041173,687,571 - 173,703,287 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il1rl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247496,795,748 - 6,873,701 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247496,795,822 - 6,873,068 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IL1RL1
985 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000003371   ⟹   ENSCAFP00000003129
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1040,659,041 - 40,677,357 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000092876   ⟹   ENSCAFP00000046214
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1040,668,226 - 40,677,206 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845018478   ⟹   ENSCAFP00845014421
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1041,481,796 - 41,515,079 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845018596   ⟹   ENSCAFP00845014505
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1041,508,483 - 41,559,352 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845018657   ⟹   ENSCAFP00845014564
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1041,533,068 - 41,543,796 (-)Ensembl
RefSeq Acc Id: XM_005625994   ⟹   XP_005626051
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11040,658,191 - 40,677,450 (-)NCBI
Dog10K_Boxer_Tasha1040,584,086 - 40,603,254 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038488942   ⟹   XP_038344870
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11041,239,090 - 41,258,271 (-)NCBI
RefSeq Acc Id: XM_038550919   ⟹   XP_038406847
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01041,712,710 - 41,731,892 (-)NCBI
RefSeq Acc Id: XM_038614826   ⟹   XP_038470754
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01041,520,373 - 41,539,587 (-)NCBI
RefSeq Acc Id: XM_038680201   ⟹   XP_038536129
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01041,524,636 - 41,543,860 (-)NCBI
RefSeq Acc Id: XP_005626051   ⟸   XM_005625994
- UniProtKB: A0A8C0QGS0 (UniProtKB/TrEMBL),   A0A8C0P2H8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000046214   ⟸   ENSCAFT00000092876
Ensembl Acc Id: ENSCAFP00000003129   ⟸   ENSCAFT00000003371
RefSeq Acc Id: XP_038344870   ⟸   XM_038488942
RefSeq Acc Id: XP_038470754   ⟸   XM_038614826
RefSeq Acc Id: XP_038536129   ⟸   XM_038680201
- UniProtKB: A0A8C0QGS0 (UniProtKB/TrEMBL),   A0A8C0P2H8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406847   ⟸   XM_038550919
- UniProtKB: A0A8C0P2H8 (UniProtKB/TrEMBL),   A0A8C0QGS0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845014505   ⟸   ENSCAFT00845018596
Ensembl Acc Id: ENSCAFP00845014421   ⟸   ENSCAFT00845018478
Ensembl Acc Id: ENSCAFP00845014564   ⟸   ENSCAFT00845018657
Protein Domains
Ig-like   TIR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002142 Ensembl
  ENSCAFG00030021130 UniProtKB/TrEMBL
  ENSCAFG00040007996 UniProtKB/TrEMBL
  ENSCAFG00845010486 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030038843.1 UniProtKB/TrEMBL
  ENSCAFT00040014967.1 UniProtKB/TrEMBL
  ENSCAFT00040015019.1 UniProtKB/TrEMBL
  ENSCAFT00845018596 ENTREZGENE
  ENSCAFT00845018596.1 UniProtKB/TrEMBL
  ENSCAFT00845018657.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.40.50.10140 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  IL-1_rcpt_fam UniProtKB/TrEMBL
  IL-1_rcpt_I/II-typ UniProtKB/TrEMBL
  IL-1RAcP-like_ig UniProtKB/TrEMBL
  TIR_dom UniProtKB/TrEMBL
  Toll_tir_struct_dom_sf UniProtKB/TrEMBL
KEGG Report cfa:611442 UniProtKB/TrEMBL
NCBI Gene IL1RL1 ENTREZGENE
PANTHER INTERLEUKIN-1 RECEPTOR-LIKE 1 UniProtKB/TrEMBL
  PTHR11890 UniProtKB/TrEMBL
Pfam Ig_6 UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
PRINTS INTRLKN1R12F UniProtKB/TrEMBL
  INTRLKN1R1F UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF52200 UniProtKB/TrEMBL
UniProt A0A8C0P2H8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QE93_CANLF UniProtKB/TrEMBL
  A0A8C0QGS0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NHN8_CANLF UniProtKB/TrEMBL
  A0A8I3RXZ8_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:41961 ENTREZGENE