DHRS9 (dehydrogenase/reductase 9) - Rat Genome Database

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Gene: DHRS9 (dehydrogenase/reductase 9) Canis lupus familiaris
Analyze
Symbol: DHRS9
Name: dehydrogenase/reductase 9
RGD ID: 12344588
Description: ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); INVOLVED IN retinoic acid biosynthetic process (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Birth Weight (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); INTERACTS WITH bisphenol A
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dehydrogenase/reductase SDR family member 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13613,859,935 - 13,881,432 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3613,866,959 - 13,880,179 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3613,872,769 - 13,897,292 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03613,978,257 - 14,002,826 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3613,987,853 - 13,996,566 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13614,062,759 - 14,087,288 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03614,050,712 - 14,075,307 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03614,163,864 - 14,188,389 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
DHRS9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13613,859,935 - 13,881,432 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3613,866,959 - 13,880,179 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3613,872,769 - 13,897,292 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03613,978,257 - 14,002,826 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3613,987,853 - 13,996,566 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13614,062,759 - 14,087,288 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03614,050,712 - 14,075,307 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03614,163,864 - 14,188,389 (+)NCBIUU_Cfam_GSD_1.0
DHRS9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382169,067,077 - 169,096,167 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2169,064,789 - 169,096,167 (+)EnsemblGRCh38hg38GRCh38
GRCh372169,923,587 - 169,952,677 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362169,629,545 - 169,660,923 (+)NCBINCBI36Build 36hg18NCBI36
Build 342169,749,051 - 169,778,184NCBI
Celera2163,546,627 - 163,578,019 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2161,818,234 - 161,849,556 (+)NCBIHuRef
CHM1_12169,927,309 - 169,958,689 (+)NCBICHM1_1
T2T-CHM13v2.02169,542,807 - 169,571,856 (+)NCBIT2T-CHM13v2.0
Dhrs9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39269,210,806 - 69,233,430 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl269,210,789 - 69,234,877 (+)EnsemblGRCm39 Ensembl
GRCm38269,380,462 - 69,403,086 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl269,380,445 - 69,404,533 (+)EnsemblGRCm38mm10GRCm38
MGSCv37269,218,519 - 69,241,143 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36269,181,301 - 69,203,925 (+)NCBIMGSCv36mm8
Celera271,045,992 - 71,068,496 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map240.59NCBI
Dhrs9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8374,553,357 - 74,579,535 (+)NCBIGRCr8
mRatBN7.2354,147,834 - 54,170,052 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl354,147,803 - 54,220,241 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx357,547,988 - 57,569,938 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0366,131,554 - 66,153,514 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0363,894,233 - 63,916,194 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0355,623,671 - 55,645,883 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl355,623,634 - 55,648,325 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0362,230,676 - 62,252,887 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4351,521,343 - 51,543,552 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1351,417,714 - 51,439,924 (+)NCBI
Celera353,710,208 - 53,732,381 (+)NCBICelera
Cytogenetic Map3q21NCBI
Dhrs9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554495,359,617 - 5,380,267 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554495,360,486 - 5,380,279 (-)NCBIChiLan1.0ChiLan1.0
DHRS9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21371,732,933 - 71,761,526 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B71,747,905 - 71,774,747 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B56,347,489 - 56,376,463 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B173,814,354 - 173,840,879 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B173,811,932 - 173,842,816 (+)Ensemblpanpan1.1panPan2
Dhrs9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303131,131,376 - 131,152,420 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646910,465,701 - 10,487,534 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646910,465,701 - 10,487,534 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DHRS9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1575,507,588 - 75,534,481 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11575,507,538 - 75,533,942 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21584,800,183 - 84,823,204 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DHRS9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11054,611,792 - 54,641,037 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1054,614,559 - 54,641,877 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040144,893,959 - 144,920,547 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dhrs9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247876,758,478 - 6,776,238 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247876,751,787 - 6,776,181 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DHRS9
218 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000019102   ⟹   ENSCAFP00000017708
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3613,866,959 - 13,880,179 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845037094   ⟹   ENSCAFP00845029051
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3613,987,853 - 13,996,566 (+)Ensembl
RefSeq Acc Id: XM_038446976   ⟹   XP_038302904
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03613,978,257 - 14,002,826 (+)NCBI
RefSeq Acc Id: XM_038521050   ⟹   XP_038376978
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13614,062,759 - 14,087,288 (+)NCBI
RefSeq Acc Id: XM_038584751   ⟹   XP_038440679
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03614,163,864 - 14,188,389 (+)NCBI
RefSeq Acc Id: XM_038649167   ⟹   XP_038505095
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03614,050,712 - 14,075,307 (+)NCBI
RefSeq Acc Id: XM_545513   ⟹   XP_545513
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13613,861,806 - 13,881,432 (+)NCBI
Dog10K_Boxer_Tasha3613,872,769 - 13,897,292 (+)NCBI
Sequence:
RefSeq Acc Id: XP_545513   ⟸   XM_545513
- UniProtKB: A0A8C0JLY0 (UniProtKB/TrEMBL),   A0A8C0P7Q2 (UniProtKB/TrEMBL),   A0A8I3PAT8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000017708   ⟸   ENSCAFT00000019102
RefSeq Acc Id: XP_038376978   ⟸   XM_038521050
RefSeq Acc Id: XP_038505095   ⟸   XM_038649167
RefSeq Acc Id: XP_038302904   ⟸   XM_038446976
- UniProtKB: A0A8C0JLY0 (UniProtKB/TrEMBL),   A0A8C0P7Q2 (UniProtKB/TrEMBL),   A0A8I3PAT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038440679   ⟸   XM_038584751
- UniProtKB: A0A8C0JLY0 (UniProtKB/TrEMBL),   A0A8C0P7Q2 (UniProtKB/TrEMBL),   A0A8I3PAT8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845029051   ⟸   ENSCAFT00845037094

Promoters
RGD ID:13689062
Promoter ID:EPDNEW_C7130
Type:multiple initiation site
Name:DHRS9_1
Description:dehydrogenase/reductase 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13613,862,025 - 13,862,085EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012028 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030022993 UniProtKB/TrEMBL
  ENSCAFG00040025716 UniProtKB/TrEMBL
  ENSCAFG00845021027 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000019102.5 UniProtKB/TrEMBL
  ENSCAFT00030042290.1 UniProtKB/TrEMBL
  ENSCAFT00040047998.1 UniProtKB/TrEMBL
  ENSCAFT00845037094 ENTREZGENE
  ENSCAFT00845037094.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
KEGG Report cfa:488391 UniProtKB/TrEMBL
NCBI Gene DHRS9 ENTREZGENE
PANTHER DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 9 UniProtKB/TrEMBL
  SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C UniProtKB/TrEMBL
Pfam adh_short UniProtKB/TrEMBL
PRINTS GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A8C0JLY0 ENTREZGENE
  A0A8C0P7Q2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PAT8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:39937 ENTREZGENE