LOC102156778 (bone marrow proteoglycan-like) - Rat Genome Database

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Gene: LOC102156778 (bone marrow proteoglycan-like) Canis lupus familiaris
Analyze
Symbol: LOC102156778
Name: bone marrow proteoglycan-like
RGD ID: 12325071
Description: INVOLVED IN defense response to nematode (ortholog); negative regulation of interleukin-10 production (ortholog); negative regulation of macrophage cytokine production (ortholog); ASSOCIATED WITH asthma (ortholog); autism spectrum disorder (ortholog); Chagas disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized LOC102156778
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11838,753,269 - 38,760,730 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1838,303,196 - 38,306,317 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01839,438,926 - 39,442,046 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11839,021,552 - 39,024,671 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01838,595,057 - 38,598,175 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01839,225,795 - 39,228,916 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC102156778
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11838,753,269 - 38,760,730 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1838,303,196 - 38,306,317 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01839,438,926 - 39,442,046 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11839,021,552 - 39,024,671 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01838,595,057 - 38,598,175 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01839,225,795 - 39,228,916 (+)NCBIUU_Cfam_GSD_1.0
PRG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,386,780 - 57,390,650 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,386,780 - 57,390,650 (-)EnsemblGRCh38hg38GRCh38
GRCh371157,154,253 - 57,158,123 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361156,911,410 - 56,914,706 (-)NCBINCBI36Build 36hg18NCBI36
Build 341156,911,410 - 56,914,706NCBI
Celera1154,511,420 - 54,514,715 (-)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1153,504,113 - 53,507,408 (-)NCBIHuRef
CHM1_11157,020,853 - 57,024,149 (-)NCBICHM1_1
T2T-CHM13v2.01157,336,805 - 57,340,674 (-)NCBIT2T-CHM13v2.0
Prg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39284,810,805 - 84,813,977 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl284,810,805 - 84,813,976 (+)EnsemblGRCm39 Ensembl
GRCm38284,980,461 - 84,983,632 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl284,980,461 - 84,983,632 (+)EnsemblGRCm38mm10GRCm38
MGSCv37284,820,618 - 84,823,789 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36284,781,300 - 84,784,471 (+)NCBIMGSCv36mm8
Celera286,579,143 - 86,582,324 (+)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.45NCBI
Prg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8390,469,192 - 90,472,759 (+)NCBIGRCr8
mRatBN7.2370,062,535 - 70,066,102 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl370,062,535 - 70,066,101 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx373,444,448 - 73,448,007 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0382,043,123 - 82,046,682 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0379,801,564 - 79,805,137 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0372,385,678 - 72,389,245 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl372,385,666 - 72,389,276 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0378,895,715 - 78,899,282 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4368,209,731 - 68,213,293 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1368,106,102 - 68,109,669 (+)NCBI
Celera369,413,529 - 69,417,096 (+)NCBICelera
Cytogenetic Map3q24NCBI
PRG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2958,543,286 - 58,547,177 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,560,838 - 59,564,163 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01152,628,289 - 52,631,634 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13160,118,686 - 160,122,041 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3160,118,111 - 160,122,002 (-)Ensemblpanpan1.1panPan2
Prg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494714,987,025 - 14,989,758 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365815,100,623 - 5,102,857 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365815,101,041 - 5,103,175 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1115,850,181 - 15,854,511 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl115,850,913 - 15,854,517 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038113,195,782 - 113,199,106 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC102156778
118 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038424308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002615925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_038424308   ⟹   XP_038280236
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01839,438,931 - 39,442,046 (+)NCBI
RefSeq Acc Id: XM_038424309   ⟹   XP_038280237
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01839,438,926 - 39,442,046 (+)NCBI
RefSeq Acc Id: XM_038454161   ⟹   XP_038310089
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1838,303,201 - 38,306,317 (+)NCBI
RefSeq Acc Id: XM_038454162   ⟹   XP_038310090
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1838,303,196 - 38,306,317 (+)NCBI
RefSeq Acc Id: XM_038500660   ⟹   XP_038356588
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11839,021,557 - 39,024,671 (+)NCBI
RefSeq Acc Id: XM_038500661   ⟹   XP_038356589
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11839,021,552 - 39,024,671 (+)NCBI
RefSeq Acc Id: XM_038563242   ⟹   XP_038419170
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01839,225,800 - 39,228,916 (+)NCBI
RefSeq Acc Id: XM_038563243   ⟹   XP_038419171
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01839,225,795 - 39,228,916 (+)NCBI
RefSeq Acc Id: XM_038627357   ⟹   XP_038483285
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01838,595,062 - 38,598,175 (+)NCBI
RefSeq Acc Id: XM_038627358   ⟹   XP_038483286
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01838,595,057 - 38,598,175 (+)NCBI
RefSeq Acc Id: XP_038356589   ⟸   XM_038500661
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038356588   ⟸   XM_038500660
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038483286   ⟸   XM_038627358
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038483285   ⟸   XM_038627357
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038280237   ⟸   XM_038424309
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JGM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038280236   ⟸   XM_038424308
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RD57 (UniProtKB/TrEMBL),   A0A8P0T5J0 (UniProtKB/TrEMBL),   A0A8C0JGM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038310090   ⟸   XM_038454162
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JGM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038310089   ⟸   XM_038454161
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RD57 (UniProtKB/TrEMBL),   A0A8P0T5J0 (UniProtKB/TrEMBL),   A0A8C0JGM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038419171   ⟸   XM_038563243
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JGM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038419170   ⟸   XM_038563242
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JGM9 (UniProtKB/TrEMBL),   A0A8C0RD57 (UniProtKB/TrEMBL),   A0A8P0T5J0 (UniProtKB/TrEMBL)
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000043222 UniProtKB/TrEMBL
  ENSCAFG00030005241 UniProtKB/TrEMBL
  ENSCAFG00040014905 UniProtKB/TrEMBL
  ENSCAFG00845021703 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000077638.2 UniProtKB/TrEMBL
  ENSCAFT00030009601.1 UniProtKB/TrEMBL
  ENSCAFT00040027551.1 UniProtKB/TrEMBL
  ENSCAFT00845038283.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  Eosinophil_major_basic UniProtKB/TrEMBL
  Snaclec UniProtKB/TrEMBL
NCBI Gene LOC102156778 ENTREZGENE
PANTHER PROTEIN CBG13490 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PRINTS EMAJORBASICP UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A8C0JGM9 ENTREZGENE
  A0A8C0RD57 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PC60_CANLF UniProtKB/TrEMBL
  A0A8P0T5J0 ENTREZGENE
UniProt Secondary A0A8P0T5J0 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC102156778  bone marrow proteoglycan-like  LOC102156778  uncharacterized LOC102156778  Symbol and/or name change 5135510 APPROVED