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Gene: SNX3 (sorting nexin 3) Canis lupus familiaris

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Symbol:

SNX3

Name:

sorting nexin 3

RGD ID:

12322152

Description:

ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog); INVOLVED IN hemoglobin biosynthetic process (ortholog); positive regulation of neuron projection development (ortholog); regulation of intracellular protein transport (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); COVID-19 (ortholog); FOUND IN clathrin-coated vesicle (inferred); cytoplasm (inferred); cytoplasmic vesicle (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sorting nexin-3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX3 (sorting nexin 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Snx3 (sorting nexin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Snx3 (sorting nexin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Snx3 (sorting nexin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX3 (sorting nexin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Snx3 (sorting nexin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX3 (sorting nexin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNX3 (sorting nexin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx3 (sorting nexin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	65,252,175 - 65,294,620 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	65,252,175 - 65,294,611 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	65,067,774 - 65,110,209 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	66,127,936 - 66,170,477 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	66,127,942 - 66,170,467 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	65,483,130 - 65,525,574 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	65,329,591 - 65,371,812 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	65,602,544 - 65,644,998 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease type 4 (ISO)

COVID-19 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endocytic recycling (IBA)

hemoglobin biosynthetic process (ISO)

host-mediated suppression of symbiont invasion (IEA)

intralumenal vesicle formation (IEA)

late endosome to Golgi transport (IBA)

membrane invagination (IEA)

negative regulation of early endosome to late endosome transport (IEA)

negative regulation of phagocytosis (IEA)

negative regulation of protein catabolic process (IEA)

negative regulation of protein transport (IEA)

positive regulation of neuron projection development (ISO)

protein to membrane docking (IEA)

protein transport (IEA)

regulation of intracellular protein transport (ISO)

regulation of protein metabolic process (ISO)

regulation of Wnt signaling pathway (IEA)

response to bacterium (IEA)

transferrin transport (ISO)

Cellular Component

clathrin-coated vesicle (IEA)

cytoplasm (IEA)

cytoplasmic vesicle (IEA)

cytosol (IEA)

early endosome (IEA)

early endosome membrane (IBA,IEA)

early phagosome (IEA)

endosome (IEA)

endosome membrane (IEA)

phagocytic vesicle (IEA)

retromer complex (IBA,IEA)

Molecular Function

lipid binding (IEA)

phosphatidylinositol binding (IEA)

phosphatidylinositol phosphate binding (IEA)

phosphatidylinositol-3,5-bisphosphate binding (ISO)

phosphatidylinositol-3-phosphate binding (IBA,IEA)

phosphatidylinositol-4-phosphate binding (ISO)

phosphatidylinositol-5-phosphate binding (ISO)

protein binding (ISO)

protein phosphatase binding (IEA)

retromer complex binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

retromer-mediated pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SNX3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	65,252,175 - 65,294,620 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	65,252,175 - 65,294,611 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	65,067,774 - 65,110,209 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	66,127,936 - 66,170,477 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	66,127,942 - 66,170,467 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	65,483,130 - 65,525,574 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	65,329,591 - 65,371,812 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	65,602,544 - 65,644,998 (-)	NCBI		UU_Cfam_GSD_1.0

SNX3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	108,211,222 - 108,261,040 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	108,211,222 - 108,261,246 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	108,532,426 - 108,582,244 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	108,639,410 - 108,689,156 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	108,639,410 - 108,689,156	NCBI
Celera	6	109,279,209 - 109,328,955 (-)	NCBI		Celera
Cytogenetic Map	6	q21	NCBI
HuRef	6	106,100,989 - 106,150,564 (-)	NCBI		HuRef
CHM1_1	6	108,795,674 - 108,845,435 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	109,388,338 - 109,438,159 (-)	NCBI		T2T-CHM13v2.0

Snx3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	42,378,050 - 42,411,365 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	42,378,026 - 42,411,377 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	42,502,054 - 42,535,369 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	42,502,030 - 42,535,381 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	42,221,860 - 42,255,175 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	42,190,444 - 42,223,782 (+)	NCBI		MGSCv36	mm8
Celera	10	43,369,479 - 43,403,088 (+)	NCBI		Celera
Cytogenetic Map	10	B2	NCBI
cM Map	10	22.89	NCBI

Snx3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	47,574,051 - 47,607,577 (+)	NCBI		GRCr8
mRatBN7.2	20	45,992,446 - 46,025,361 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	45,992,720 - 46,025,379 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	47,710,148 - 47,742,787 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	47,360,312 - 47,392,951 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	48,053,233 - 48,086,017 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	47,225,382 - 47,263,390 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	47,225,619 - 47,263,390 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	48,923,090 - 48,932,814 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	20	53,947,195 - 53,979,808 (-)	NCBI		Celera
Cytogenetic Map	20	q13	NCBI

Snx3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	33,340,274 - 33,345,500 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	33,339,974 - 33,344,563 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNX3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	128,216,245 - 128,269,590 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	126,106,433 - 126,156,957 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	106,010,633 - 106,063,331 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	109,874,095 - 109,924,185 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	109,874,105 - 109,924,185 (-)	Ensembl	panpan1.1		panPan2

Snx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	100,197,614 - 100,245,855 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936564	4,471,652 - 4,520,785 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936564	4,472,171 - 4,520,732 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	74,306,455 - 74,349,335 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	74,306,450 - 74,349,735 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	83,576,787 - 83,585,208 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNX3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	65,590,413 - 65,640,368 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	65,589,801 - 65,640,876 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	37,916,042 - 37,966,796 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snx3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624780	14,043,003 - 14,080,380 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624780	14,043,002 - 14,080,380 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SNX3
586 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038492566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038554879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038618752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038684314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_849913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000006070 ⟹ ENSCAFP00000005620

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	12	65,252,408 - 65,294,349 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000073250 ⟹ ENSCAFP00000046757

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	12	65,252,408 - 65,294,611 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000077968 ⟹ ENSCAFP00000060714

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	12	65,252,175 - 65,294,610 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845016176 ⟹ ENSCAFP00845012582

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	12	66,127,942 - 66,170,203 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845016209 ⟹ ENSCAFP00845012609

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	12	66,127,948 - 66,170,219 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845016248 ⟹ ENSCAFP00845012641

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	12	66,128,529 - 66,170,467 (-)	Ensembl

RefSeq Acc Id:

XM_038492566 ⟹ XP_038348494

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	12	65,483,130 - 65,525,574 (-)	NCBI

RefSeq Acc Id:

XM_038554879 ⟹ XP_038410807

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	12	65,602,544 - 65,644,998 (-)	NCBI

RefSeq Acc Id:

XM_038618752 ⟹ XP_038474680

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	12	65,329,591 - 65,371,812 (-)	NCBI

RefSeq Acc Id:

XM_038684314 ⟹ XP_038540242

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	12	66,127,936 - 66,170,477 (-)	NCBI

RefSeq Acc Id:

XM_849913 ⟹ XP_855006

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	12	65,252,175 - 65,294,620 (-)	NCBI
Dog10K_Boxer_Tasha	12	65,067,774 - 65,110,209 (-)	NCBI

Sequence:

show sequence

CCCGCAGTCCCCCTCCGCGGCCTCAGCCGGGGCTCCAGGGCCCAGGGCGCGGCGTCCCGGCGAG
TCAGCTGTTCCTCCCCCGCGGGCTTCGAGAGGCGGAAGCCGGAGACTCGCAGGGAGGAGCTCCG
CGCGCGGGGGGAACGCCCGGCCTACGTGCTCGTTCGCCTCGCGACCGCTGTGCGCGAGCCCGGG
GTCCCCGCGGCGGGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGGAGGGAGTCCGCGGCGGCGGC
GGCTGCAGGAGCGCAATGGCGGAGACCGTGGCGGACACCCGGCGGCTCATCACCAAGCCGCAGA
ACCTCAACGATGCCTACGGGCCGCCCAGCAACTTCCTCGAGATCGATGTGAGCAACCCGCAGAC
GGTGGGGGTCGGCCGGGGCCGCTTCACCACCTACGAAATCAGGGTCAAGACAAATCTGCCTATT
TTCAAGCTGAAGGAATCTACTGTTAGAAGAAGATACAGTGATTTTGAATGGCTGCGAAGTGAAT
TAGAAAGAGAGAGCAAGGTTGTAGTTCCCCCTCTCCCTGGAAAAGCATTTTTGCGTCAGCTTCC
TTTTAGAGGAGATGATGGAATATTTGATGACAATTTTATTGAAGAAAGGAAGCAAGGGCTGGAG
CAATTTATTAACAAGGTTGCTGGTCATCCTCTGGCACAGAATGAACGTTGTCTTCACATGTTTT
TACAGGACGAAATTATAGATAAAAGCTATACACCATCTAAAATAAGACATGCCTGAAATTTGGT
GAGAAGGGCGCCAAAAAAAAAAAAAAAAAACTTTCCATGACTATTAATGATTCATATGCACCAG
TGAAGAAGTTCTAACTAACTTTTAGCATGCTGCACAGAAACTGGTATAACACGCCTTCAGTATA
CTAACATTCATATGCTCAGTTTTGTTTTGTTTTGTTTTGGCAGTTGACAAGAAGTTAATTTGCT
TTAGTGAAAATCCCTCATCCACCCTTTCTCTATGAATAGCTCTTCCTTGCTGTTTTAATGTGGT
ACACACTATAGCCTCGCAGACCTATTACTCCAGTATAATCTGCAGTGTCCTAACTAAAGTTACT
GACTTGGTCTTATCTGCAGTTTTTGTGTCCTGTTTGCTTCTTGAATCTGATTAACTAGAACATT
TCTCTTGCTCCTTTTTAATATGTGATGTCACTTGACCTAATTTATGTGTAGAAGCACTACACCA
TTGGTTTCCAGTACCCTATGTGTAAGATACACACTTGTGTGCAGAAAGTATCTCCCTTCAGGCT
TGTAATACCCTTCACGTGGAAGATCAATGAGGGAAATCTTTATATTCTGTATAAAAACAAATCA
AATTTATATACTAAAATCATTTGTCTAAAAATTTAAGTTGTTTTCAGATAAAAATAAAAAAGCA
TTTCTGATATGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038348494	(Get FASTA)	NCBI Sequence Viewer
	XP_038410807	(Get FASTA)	NCBI Sequence Viewer
	XP_038474680	(Get FASTA)	NCBI Sequence Viewer
	XP_038540242	(Get FASTA)	NCBI Sequence Viewer
	XP_855006	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000005620.5
	ENSCAFP00000060714.2
	ENSCAFP00030016400.1
	ENSCAFP00030016473.1
	ENSCAFP00040016428.1
	ENSCAFP00845012582
	ENSCAFP00845012582.1
	ENSCAFP00845012609.1
	ENSCAFP00845012641.1

RefSeq Acc Id:	XP_855006 ⟸ XM_849913
- UniProtKB:	A0A8C0KZR3 (UniProtKB/TrEMBL), A0A8C0MYJ8 (UniProtKB/TrEMBL), A0A8C0R7W4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKE STVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINK VAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA hide sequence

Ensembl Acc Id:

ENSCAFP00000005620 ⟸ ENSCAFT00000006070

Ensembl Acc Id:

ENSCAFP00000060714 ⟸ ENSCAFT00000077968

Ensembl Acc Id:

ENSCAFP00000046757 ⟸ ENSCAFT00000073250

RefSeq Acc Id:

XP_038348494 ⟸ XM_038492566

RefSeq Acc Id:

XP_038474680 ⟸ XM_038618752

RefSeq Acc Id:	XP_038540242 ⟸ XM_038684314
- UniProtKB:	A0A8C0KZR3 (UniProtKB/TrEMBL), A0A8C0MYJ8 (UniProtKB/TrEMBL), A0A8C0R7W4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038410807 ⟸ XM_038554879
- UniProtKB:	A0A8C0KZR3 (UniProtKB/TrEMBL), A0A8C0MYJ8 (UniProtKB/TrEMBL), A0A8C0R7W4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845012582 ⟸ ENSCAFT00845016176

Ensembl Acc Id:

ENSCAFP00845012641 ⟸ ENSCAFT00845016248

Ensembl Acc Id:

ENSCAFP00845012609 ⟸ ENSCAFT00845016209

Protein Domains

Promoters

RGD ID:

13685523

Promoter ID:

EPDNEW_C3592

Type:

initiation region

Name:

SNX3_1

Description:

sorting nexin 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	12	65,294,443 - 65,294,503	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000003772	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030010109	UniProtKB/TrEMBL
	ENSCAFG00040010170	UniProtKB/TrEMBL
	ENSCAFG00845009178	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000006070.5	UniProtKB/TrEMBL
	ENSCAFT00000077968.2	UniProtKB/TrEMBL
	ENSCAFT00030018770.1	UniProtKB/TrEMBL
	ENSCAFT00030018874.1	UniProtKB/TrEMBL
	ENSCAFT00040018933.1	UniProtKB/TrEMBL
	ENSCAFT00845016176	ENTREZGENE
	ENSCAFT00845016176.1	UniProtKB/TrEMBL
	ENSCAFT00845016209.1	UniProtKB/TrEMBL
	ENSCAFT00845016248.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1520.10	UniProtKB/TrEMBL
InterPro	PX_dom	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	PX_SNX3_Vert	UniProtKB/TrEMBL
	Sorting_Nexin	UniProtKB/TrEMBL
KEGG Report	cfa:613007	UniProtKB/TrEMBL
NCBI Gene	SNX3	ENTREZGENE
PANTHER	RE52028P	UniProtKB/TrEMBL
	SORTING NEXIN-3	UniProtKB/TrEMBL
Pfam	PF00787	UniProtKB/TrEMBL
PROSITE	PS50195	UniProtKB/TrEMBL
SMART	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	SSF64268	UniProtKB/TrEMBL
UniProt	A0A8C0KZR3	ENTREZGENE
	A0A8C0MYJ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0MYQ3_CANLF	UniProtKB/TrEMBL
	A0A8C0R7W4	ENTREZGENE
	A0A8I3N1L7_CANLF	UniProtKB/TrEMBL
	A0A8I3NAU9_CANLF	UniProtKB/TrEMBL
	A0A8I3NB79_CANLF	UniProtKB/TrEMBL
	A0A8P0P9L2_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:46636	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

RGD Manual Annotations