FLVCR1 (FLVCR choline and heme transporter 1) - Rat Genome Database

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Gene: FLVCR1 (FLVCR choline and heme transporter 1) Canis lupus familiaris
Analyze
Symbol: FLVCR1
Name: FLVCR choline and heme transporter 1
RGD ID: 12306969
Description: ENCODES a protein that exhibits choline transmembrane transporter activity (inferred); ethanolamine transmembrane transporter activity (inferred); heme transmembrane transporter activity (inferred); INVOLVED IN blood vessel development (inferred); choline transport (inferred); embryonic digit morphogenesis (inferred); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); Diamond-Blackfan anemia (ortholog); fundus dystrophy (ortholog); FOUND IN mitochondrial membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: feline leukemia virus subgroup C cellular receptor 1; feline leukemia virus subgroup C receptor-related protein 1; FLVCR heme transporter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1711,001,155 - 11,038,910 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl711,001,101 - 11,035,980 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha710,576,761 - 10,614,312 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0710,707,668 - 10,745,429 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl710,707,433 - 10,745,177 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1710,630,123 - 10,667,529 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0710,731,550 - 10,769,463 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0710,856,188 - 10,893,897 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FLVCR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1711,001,155 - 11,038,910 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl711,001,101 - 11,035,980 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha710,576,761 - 10,614,312 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0710,707,668 - 10,745,429 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl710,707,433 - 10,745,177 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1710,630,123 - 10,667,529 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0710,731,550 - 10,769,463 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0710,856,188 - 10,893,897 (+)NCBIUU_Cfam_GSD_1.0
FLVCR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,858,275 - 212,899,363 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,858,275 - 212,899,363 (+)EnsemblGRCh38hg38GRCh38
GRCh371213,031,617 - 213,072,705 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361211,098,220 - 211,135,379 (+)NCBINCBI36Build 36hg18NCBI36
Celera1186,257,592 - 186,295,983 (+)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1183,708,670 - 183,749,562 (+)NCBIHuRef
CHM1_11214,303,965 - 214,345,035 (+)NCBICHM1_1
T2T-CHM13v2.01212,103,255 - 212,144,367 (+)NCBIT2T-CHM13v2.0
Flvcr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391190,738,029 - 190,758,387 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1190,738,044 - 190,758,355 (-)EnsemblGRCm39 Ensembl
GRCm381191,005,832 - 191,026,190 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,005,847 - 191,026,158 (-)EnsemblGRCm38mm10GRCm38
MGSCv371192,829,711 - 192,850,069 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361192,706,447 - 192,726,805 (-)NCBIMGSCv36mm8
Celera1197,930,699 - 197,951,041 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map196.28NCBI
Flvcr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813105,117,402 - 105,139,780 (-)NCBIGRCr8
mRatBN7.213102,586,263 - 102,608,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13102,586,257 - 102,608,661 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.013109,578,294 - 109,624,235 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13109,578,074 - 109,629,482 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013114,211,863 - 114,224,490 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.013114,180,812 - 114,183,817 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera13102,055,793 - 102,074,779 (-)NCBICelera
Cytogenetic Map13q27NCBI
Flvcr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554064,674,140 - 4,702,763 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554064,673,797 - 4,702,858 (-)NCBIChiLan1.0ChiLan1.0
FLVCR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2136,504,306 - 36,545,327 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1136,468,659 - 36,509,726 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01188,425,697 - 188,466,721 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11193,284,158 - 193,321,962 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1193,284,158 - 193,320,554 (+)Ensemblpanpan1.1panPan2
Flvcr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934463,453,117 - 63,486,909 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936557692,489 - 726,965 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936557693,445 - 727,166 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FLVCR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9130,541,660 - 130,570,702 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19130,543,911 - 130,570,486 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29143,470,869 - 143,497,447 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FLVCR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12516,656,219 - 16,688,397 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2516,652,246 - 16,688,376 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605517,151,582 - 17,183,388 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Flvcr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477118,239,437 - 18,270,408 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FLVCR1
509 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000019630   ⟹   ENSCAFP00000018207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl711,001,101 - 11,035,980 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000043155   ⟹   ENSCAFP00000042685
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl711,001,101 - 11,035,980 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845001967   ⟹   ENSCAFP00845001545
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl710,707,433 - 10,745,177 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845001988   ⟹   ENSCAFP00845001560
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl710,707,433 - 10,745,177 (+)Ensembl
RefSeq Acc Id: XM_003639179   ⟹   XP_003639227
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1711,001,155 - 11,038,910 (+)NCBI
Dog10K_Boxer_Tasha710,576,761 - 10,614,312 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038480777   ⟹   XP_038336705
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1710,630,123 - 10,667,529 (+)NCBI
RefSeq Acc Id: XM_038542100   ⟹   XP_038398028
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0710,856,188 - 10,893,897 (+)NCBI
RefSeq Acc Id: XM_038606255   ⟹   XP_038462183
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0710,731,550 - 10,769,463 (+)NCBI
RefSeq Acc Id: XM_038670952   ⟹   XP_038526880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0710,707,668 - 10,745,429 (+)NCBI
RefSeq Acc Id: XP_003639227   ⟸   XM_003639179
- UniProtKB: A0A8C0KMK2 (UniProtKB/TrEMBL),   A0A8I3MHS3 (UniProtKB/TrEMBL),   A0A8P0NED1 (UniProtKB/TrEMBL),   A0A8C0MGG5 (UniProtKB/TrEMBL),   A0A8I3MNG3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000018207   ⟸   ENSCAFT00000019630
Ensembl Acc Id: ENSCAFP00000042685   ⟸   ENSCAFT00000043155
RefSeq Acc Id: XP_038336705   ⟸   XM_038480777
RefSeq Acc Id: XP_038462183   ⟸   XM_038606255
RefSeq Acc Id: XP_038526880   ⟸   XM_038670952
- UniProtKB: A0A8C0KMK2 (UniProtKB/TrEMBL),   A0A8I3MHS3 (UniProtKB/TrEMBL),   A0A8P0NED1 (UniProtKB/TrEMBL),   A0A8C0MGG5 (UniProtKB/TrEMBL),   A0A8I3MNG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038398028   ⟸   XM_038542100
- UniProtKB: A0A8C0KMK2 (UniProtKB/TrEMBL),   A0A8C0MGG5 (UniProtKB/TrEMBL),   A0A8I3MHS3 (UniProtKB/TrEMBL),   A0A8I3MNG3 (UniProtKB/TrEMBL),   A0A8P0NED1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845001560   ⟸   ENSCAFT00845001988
Ensembl Acc Id: ENSCAFP00845001545   ⟸   ENSCAFT00845001967

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012364 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006126 UniProtKB/TrEMBL
  ENSCAFG00845001151 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000019630.4 UniProtKB/TrEMBL
  ENSCAFT00000043155.3 UniProtKB/TrEMBL
  ENSCAFT00030011310.1 UniProtKB/TrEMBL
  ENSCAFT00845001967 ENTREZGENE
  ENSCAFT00845001967.1 UniProtKB/TrEMBL
  ENSCAFT00845001988.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  SLC49-like UniProtKB/TrEMBL
KEGG Report cfa:100856001 UniProtKB/TrEMBL
NCBI Gene FLVCR1 ENTREZGENE
PANTHER FELINE LEUKEMIA VIRUS SUBGROUP C RECEPTOR-RELATED PROTEIN 1 UniProtKB/TrEMBL
  MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A8C0KMK2 ENTREZGENE
  A0A8C0MGG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MHS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MNG3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NED1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:82539 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-31 FLVCR1  FLVCR choline and heme transporter 1  FLVCR1  FLVCR heme transporter 1  Symbol and/or name change 19259463 PROVISIONAL
2019-10-08 FLVCR1  FLVCR heme transporter 1  FLVCR1  feline leukemia virus subgroup C cellular receptor 1  Symbol and/or name change 5135510 APPROVED