RHCG (Rh family C glycoprotein) - Rat Genome Database

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Gene: RHCG (Rh family C glycoprotein) Canis lupus familiaris
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Symbol: RHCG
Name: Rh family C glycoprotein
RGD ID: 12262252
Description: ENCODES a protein that exhibits ammonium channel activity; carbon dioxide transmembrane transporter activity (ortholog); INVOLVED IN ammonium transmembrane transport; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); D-2-hydroxyglutaric aciduria 2 (ortholog); FOUND IN plasma membrane; apical plasma membrane (ortholog); basal plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ammonium transporter Rh type C; rh family type C glycoprotein; Rh type C glycoprotein; rhesus blood group family type C glycoprotein; Rhesus blood group, C glycoprotein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,503,172 - 52,526,362 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,503,176 - 52,526,719 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha355,136,730 - 55,159,917 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0352,919,695 - 52,942,920 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl352,918,628 - 52,943,290 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1352,441,812 - 52,464,994 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,652,116 - 52,675,289 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0352,992,155 - 53,015,328 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:15929723   PMID:16227429   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RHCG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,503,172 - 52,526,362 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,503,176 - 52,526,719 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha355,136,730 - 55,159,917 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0352,919,695 - 52,942,920 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl352,918,628 - 52,943,290 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1352,441,812 - 52,464,994 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,652,116 - 52,675,289 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0352,992,155 - 53,015,328 (-)NCBIUU_Cfam_GSD_1.0
RHCG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381589,471,407 - 89,496,583 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1589,471,398 - 89,496,589 (-)EnsemblGRCh38hg38GRCh38
GRCh371590,014,638 - 90,039,814 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361587,815,642 - 87,840,803 (-)NCBINCBI36Build 36hg18NCBI36
Build 341587,815,645 - 87,840,803NCBI
Celera1566,417,127 - 66,442,288 (-)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1566,127,581 - 66,152,746 (-)NCBIHuRef
CHM1_11589,855,641 - 89,880,764 (-)NCBICHM1_1
T2T-CHM13v2.01587,227,437 - 87,252,613 (-)NCBIT2T-CHM13v2.0
Rhcg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,243,111 - 79,267,405 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,243,111 - 79,267,405 (-)EnsemblGRCm39 Ensembl
GRCm38779,593,363 - 79,617,657 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,593,363 - 79,617,657 (-)EnsemblGRCm38mm10GRCm38
MGSCv37786,738,249 - 86,762,543 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36779,466,882 - 79,491,161 (-)NCBIMGSCv36mm8
Celera776,996,917 - 77,021,608 (-)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.09NCBI
Rhcg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81142,941,046 - 142,965,242 (-)NCBIGRCr8
mRatBN7.21133,531,704 - 133,555,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,531,716 - 133,555,876 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1141,441,386 - 141,465,168 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01148,610,769 - 148,634,552 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01141,528,475 - 141,552,260 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01141,325,854 - 141,349,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1141,325,856 - 141,349,881 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01142,286,922 - 142,310,949 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41135,361,418 - 135,386,461 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11135,439,824 - 135,464,867 (-)NCBI
Celera1125,594,825 - 125,618,934 (-)NCBICelera
Cytogenetic Map1q31NCBI
Rhcg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541615,639,551 - 15,654,293 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541615,639,425 - 15,657,708 (+)NCBIChiLan1.0ChiLan1.0
RHCG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21679,021,969 - 79,050,885 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11582,726,346 - 82,755,232 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01568,165,708 - 68,190,964 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11587,372,238 - 87,397,011 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1587,372,238 - 87,397,011 (-)Ensemblpanpan1.1panPan2
Rhcg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640130,981,170 - 131,005,380 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648315,328,364 - 15,353,404 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648315,329,147 - 15,353,301 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHCG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl755,046,245 - 55,071,475 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1755,046,244 - 55,071,504 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2760,022,002 - 60,039,452 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RHCG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1298,015,391 - 8,040,811 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl298,015,620 - 8,040,486 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605938,774,862 - 38,799,656 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rhcg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476816,623,599 - 16,644,189 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476816,623,667 - 16,644,149 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RHCG
298 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
5 5 2 23 16 9 6 6 21 16 12 14 9

Sequence


Ensembl Acc Id: ENSCAFT00000018959   ⟹   ENSCAFP00000017570
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl352,503,176 - 52,526,719 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000060206   ⟹   ENSCAFP00000056503
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl352,503,176 - 52,526,719 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845000458   ⟹   ENSCAFP00845000312
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl352,918,628 - 52,943,290 (-)Ensembl
RefSeq Acc Id: NM_001048022   ⟹   NP_001041487
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1352,503,172 - 52,526,362 (-)NCBI
Dog10K_Boxer_Tasha355,136,730 - 55,159,917 (-)NCBI
ROS_Cfam_1.0352,919,695 - 52,942,920 (-)NCBI
UMICH_Zoey_3.1352,441,812 - 52,464,994 (-)NCBI
UNSW_CanFamBas_1.0352,652,116 - 52,675,289 (-)NCBI
UU_Cfam_GSD_1.0352,992,155 - 53,015,328 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001041487 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAX39720 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000017570.4
  ENSCAFP00040002271.1
  ENSCAFP00845000312.1
GenBank Protein Q3BCQ4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001041487   ⟸   NM_001048022
- UniProtKB: Q3BCQ4 (UniProtKB/Swiss-Prot),   A0A8C0PPQ9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000056503   ⟸   ENSCAFT00000060206
Ensembl Acc Id: ENSCAFP00000017570   ⟸   ENSCAFT00000018959
Ensembl Acc Id: ENSCAFP00845000312   ⟸   ENSCAFT00845000458
Promoters
RGD ID:13682745
Promoter ID:EPDNEW_C815
Type:single initiation site
Name:RHCG_1
Description:Rh family C glycoprotein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1352,526,323 - 52,526,383EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011927 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040001357 UniProtKB/TrEMBL
  ENSCAFG00845000295 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000018959.5 UniProtKB/TrEMBL
  ENSCAFT00040002635.1 UniProtKB/TrEMBL
  ENSCAFT00845000458.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3430.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ammonium/urea_transptr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NH4_transpt_AmtB-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhesusRHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:479040 UniProtKB/Swiss-Prot
NCBI Gene RHCG ENTREZGENE
PANTHER AMMONIUM TRANSPORTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMMONIUM TRANSPORTER RH TYPE C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ammonium_transp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS RHESUSRHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Ammonium transporter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0PPQ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MHG4_CANLF UniProtKB/TrEMBL
  A0A8P0NDY6_CANLF UniProtKB/TrEMBL
  Q3BCQ4 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:45550 ENTREZGENE