MRPS22 (mitochondrial ribosomal protein S22) - Rat Genome Database

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Gene: MRPS22 (mitochondrial ribosomal protein S22) Canis lupus familiaris
Analyze
Symbol: MRPS22
Name: mitochondrial ribosomal protein S22
RGD ID: 12243811
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); ASSOCIATED WITH 46 XX gonadal dysgenesis (ortholog); 46,XX Sex Reversal with Dysgenesis of Kidneys, Adrenals, and Lungs (ortholog); Adult-Onset Muscular Dystrophy with Leukoencephalopathy (ortholog); FOUND IN mitochondrial small ribosomal subunit (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 28S ribosomal protein S22, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12335,508,478 - 35,536,081 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2335,496,961 - 35,524,082 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02336,047,616 - 36,074,786 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2336,047,642 - 36,074,787 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12335,728,105 - 35,755,240 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02335,801,180 - 35,828,369 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02336,043,257 - 36,070,586 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MRPS22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12335,508,478 - 35,536,081 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2335,496,961 - 35,524,082 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02336,047,616 - 36,074,786 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2336,047,642 - 36,074,787 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12335,728,105 - 35,755,240 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02335,801,180 - 35,828,369 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02336,043,257 - 36,070,586 (+)NCBIUU_Cfam_GSD_1.0
MRPS22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383139,343,994 - 139,357,140 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3139,005,806 - 139,360,497 (+)EnsemblGRCh38hg38GRCh38
GRCh373139,062,836 - 139,075,982 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363140,545,551 - 140,558,578 (+)NCBINCBI36Build 36hg18NCBI36
Build 343140,545,558 - 140,558,583NCBI
Celera3137,485,814 - 137,498,839 (+)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3136,438,309 - 136,451,335 (+)NCBIHuRef
CHM1_13139,026,426 - 139,039,453 (+)NCBICHM1_1
T2T-CHM13v2.03142,091,547 - 142,104,693 (+)NCBIT2T-CHM13v2.0
Mrps22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39998,470,783 - 98,483,732 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl998,470,783 - 98,483,713 (-)EnsemblGRCm39 Ensembl
GRCm38998,588,730 - 98,601,679 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl998,588,730 - 98,601,660 (-)EnsemblGRCm38mm10GRCm38
MGSCv37998,489,149 - 98,502,098 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36998,398,089 - 98,411,011 (-)NCBIMGSCv36mm8
Celera998,134,359 - 98,147,288 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.41NCBI
Mrps22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88108,063,468 - 108,076,638 (-)NCBIGRCr8
mRatBN7.2899,184,110 - 99,197,278 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl899,184,109 - 99,197,291 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8104,851,760 - 104,864,953 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08103,051,030 - 103,064,223 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08100,893,530 - 100,906,723 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08106,604,421 - 106,617,591 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8106,604,379 - 106,617,597 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08106,047,828 - 106,060,998 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera898,592,165 - 98,605,335 (-)NCBICelera
Cytogenetic Map8q31NCBI
Mrps22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555086,232,514 - 6,246,633 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555086,232,514 - 6,246,593 (-)NCBIChiLan1.0ChiLan1.0
MRPS22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22137,258,102 - 137,271,207 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13137,262,839 - 137,277,741 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03136,380,963 - 136,394,148 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13143,638,771 - 143,993,852 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3143,980,670 - 143,993,842 (+)Ensemblpanpan1.1panPan2
Mrps22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560274,712,076 - 74,726,839 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365401,451,826 - 1,468,865 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365401,451,882 - 1,466,569 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1379,981,796 - 80,232,773 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11380,006,656 - 80,232,107 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21387,874,586 - 87,894,354 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11551,198,515 - 51,211,587 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1551,198,553 - 51,211,532 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604124,184,142 - 24,197,282 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrps22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473015,894,676 - 15,907,892 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473015,894,624 - 15,908,069 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MRPS22
447 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005634501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038507794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038507795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038507796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038571035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038571036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038571037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038635227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038635228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038635229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00845047583   ⟹   ENSCAFP00845037338
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2336,047,642 - 36,074,787 (+)Ensembl
RefSeq Acc Id: XM_005634501   ⟹   XP_005634558
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12335,508,478 - 35,536,081 (+)NCBI
Dog10K_Boxer_Tasha2335,496,961 - 35,524,082 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038432491   ⟹   XP_038288419
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02336,047,616 - 36,074,786 (+)NCBI
RefSeq Acc Id: XM_038432492   ⟹   XP_038288420
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02336,047,699 - 36,074,786 (+)NCBI
RefSeq Acc Id: XM_038432493   ⟹   XP_038288421
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02336,048,137 - 36,074,786 (+)NCBI
RefSeq Acc Id: XM_038457084   ⟹   XP_038313012
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2335,497,044 - 35,524,082 (+)NCBI
RefSeq Acc Id: XM_038457085   ⟹   XP_038313013
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2335,497,483 - 35,524,082 (+)NCBI
RefSeq Acc Id: XM_038507794   ⟹   XP_038363722
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12335,728,105 - 35,755,240 (+)NCBI
RefSeq Acc Id: XM_038507795   ⟹   XP_038363723
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12335,728,187 - 35,755,240 (+)NCBI
RefSeq Acc Id: XM_038507796   ⟹   XP_038363724
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12335,728,626 - 35,755,240 (+)NCBI
RefSeq Acc Id: XM_038571035   ⟹   XP_038426963
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02336,043,257 - 36,070,586 (+)NCBI
RefSeq Acc Id: XM_038571036   ⟹   XP_038426964
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02336,043,339 - 36,070,586 (+)NCBI
RefSeq Acc Id: XM_038571037   ⟹   XP_038426965
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02336,043,779 - 36,070,586 (+)NCBI
RefSeq Acc Id: XM_038635227   ⟹   XP_038491155
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02335,801,180 - 35,828,369 (+)NCBI
RefSeq Acc Id: XM_038635228   ⟹   XP_038491156
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02335,801,263 - 35,828,369 (+)NCBI
RefSeq Acc Id: XM_038635229   ⟹   XP_038491157
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02335,801,701 - 35,828,369 (+)NCBI
RefSeq Acc Id: XP_005634558   ⟸   XM_005634501
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NBE9 (UniProtKB/TrEMBL),   A0A8I3SAI0 (UniProtKB/TrEMBL),   A0A8C0L6T8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038363722   ⟸   XM_038507794
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038363723   ⟸   XM_038507795
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038363724   ⟸   XM_038507796
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038491155   ⟸   XM_038635227
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038491156   ⟸   XM_038635228
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038491157   ⟸   XM_038635229
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038288419   ⟸   XM_038432491
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NBE9 (UniProtKB/TrEMBL),   A0A8I3SAI0 (UniProtKB/TrEMBL),   A0A8C0L6T8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038288420   ⟸   XM_038432492
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RQR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038288421   ⟸   XM_038432493
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RQR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038313012   ⟸   XM_038457084
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RQR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038313013   ⟸   XM_038457085
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RQR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038426963   ⟸   XM_038571035
- Peptide Label: isoform X1
- UniProtKB: A0A8C0L6T8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038426964   ⟸   XM_038571036
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RQR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038426965   ⟸   XM_038571037
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RQR3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845037338   ⟸   ENSCAFT00845047583


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007610 UniProtKB/TrEMBL
  ENSCAFG00030013500 UniProtKB/TrEMBL
  ENSCAFG00030015082 UniProtKB/TrEMBL
  ENSCAFG00030021863 UniProtKB/TrEMBL
  ENSCAFG00845027000 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000012168.5 UniProtKB/TrEMBL
  ENSCAFT00030025003.1 UniProtKB/TrEMBL
  ENSCAFT00030027818.1 UniProtKB/TrEMBL
  ENSCAFT00030040111.1 UniProtKB/TrEMBL
  ENSCAFT00845047583 ENTREZGENE
  ENSCAFT00845047583.1 UniProtKB/TrEMBL
InterPro Ribosomal_S22_mit UniProtKB/TrEMBL
NCBI Gene MRPS22 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S22, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR13071 UniProtKB/TrEMBL
Pfam MRP-S22 UniProtKB/TrEMBL
UniProt A0A8C0L6T8 ENTREZGENE
  A0A8C0NBE9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0ND47_CANLF UniProtKB/TrEMBL
  A0A8C0RQR3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3SAI0 ENTREZGENE, UniProtKB/TrEMBL