TOP2A (DNA topoisomerase II alpha) - Rat Genome Database

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Gene: TOP2A (DNA topoisomerase II alpha) Canis lupus familiaris
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Symbol: TOP2A
Name: DNA topoisomerase II alpha
RGD ID: 12233742
Description: ENCODES a protein that exhibits ATP binding (ortholog); chromatin binding (ortholog); DNA binding (ortholog); INVOLVED IN cerebellar granule cell differentiation (ortholog); cerebellar Purkinje cell differentiation (ortholog); chromosome condensation (ortholog); PARTICIPATES IN doxorubicin pharmacodynamics pathway; etoposide pharmacodynamics pathway; etoposide pharmacokinetics pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); adenoid cystic carcinoma (ortholog); adrenocortical carcinoma (ortholog); FOUND IN DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex (ortholog); nucleolus (ortholog); INTERACTS WITH bisphenol A
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA topoisomerase 2-alpha; topoisomerase (DNA) II alpha; topoisomerase (DNA) II alpha 170kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,207,501 - 22,237,497 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl922,207,638 - 22,237,496 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,679,941 - 21,709,943 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0923,000,244 - 23,030,254 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl923,000,269 - 23,029,980 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1921,774,298 - 21,804,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0922,033,150 - 22,063,078 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0922,157,897 - 22,187,909 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202   PMID:37175843  


Genomics

Comparative Map Data
TOP2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,207,501 - 22,237,497 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl922,207,638 - 22,237,496 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,679,941 - 21,709,943 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0923,000,244 - 23,030,254 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl923,000,269 - 23,029,980 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1921,774,298 - 21,804,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0922,033,150 - 22,063,078 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0922,157,897 - 22,187,909 (+)NCBIUU_Cfam_GSD_1.0
TOP2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381740,388,525 - 40,417,896 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1740,388,525 - 40,417,896 (-)EnsemblGRCh38hg38GRCh38
GRCh371738,544,777 - 38,574,148 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361735,798,321 - 35,827,695 (-)NCBINCBI36Build 36hg18NCBI36
Build 341735,798,320 - 35,827,695NCBI
Celera1735,204,916 - 35,234,352 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1734,337,633 - 34,367,123 (-)NCBIHuRef
CHM1_11738,780,085 - 38,809,522 (-)NCBICHM1_1
T2T-CHM13v2.01741,252,019 - 41,281,395 (-)NCBIT2T-CHM13v2.0
Top2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391198,883,773 - 98,915,037 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1198,883,769 - 98,915,015 (-)EnsemblGRCm39 Ensembl
GRCm381198,992,947 - 99,024,199 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1198,992,943 - 99,024,189 (-)EnsemblGRCm38mm10GRCm38
MGSCv371198,854,261 - 98,885,503 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361198,809,493 - 98,840,205 (-)NCBIMGSCv36mm8
Celera11108,658,802 - 108,690,006 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1162.91NCBI
Top2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81084,441,954 - 84,473,093 (-)NCBIGRCr8
mRatBN7.21083,945,731 - 83,976,874 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1083,945,735 - 83,976,874 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1088,889,659 - 88,920,792 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01088,387,764 - 88,418,905 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01083,780,312 - 83,811,315 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01086,901,467 - 86,930,947 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1086,901,007 - 86,932,154 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01086,699,277 - 86,728,310 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41087,771,337 - 87,800,960 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11087,785,706 - 87,815,332 (-)NCBI
Celera1082,687,594 - 82,716,976 (-)NCBICelera
Cytogenetic Map10q31NCBI
Top2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545114,929,136 - 14,964,723 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545114,928,273 - 14,964,855 (-)NCBIChiLan1.0ChiLan1.0
TOP2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21924,537,882 - 24,567,338 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11726,432,885 - 26,462,340 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01716,872,169 - 16,901,605 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11717,097,619 - 17,127,195 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1717,097,778 - 17,126,207 (+)Ensemblpanpan1.1panPan2
Top2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560221,608,163 - 21,633,139 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649015,441,575 - 15,466,978 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649015,441,463 - 15,465,692 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TOP2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1222,001,282 - 22,028,450 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11222,001,300 - 22,028,452 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21222,310,214 - 22,337,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TOP2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11665,761,391 - 65,792,041 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1665,761,416 - 65,792,701 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607736,662,555 - 36,693,082 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in TOP2A
253 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000025539   ⟹   ENSCAFP00000023713
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl922,207,638 - 22,237,496 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000046104   ⟹   ENSCAFP00000042966
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl922,207,842 - 22,237,496 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845014593   ⟹   ENSCAFP00845011307
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl923,000,269 - 23,029,980 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845014679   ⟹   ENSCAFP00845011373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl923,000,269 - 23,029,980 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845014873   ⟹   ENSCAFP00845011528
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl923,000,585 - 23,029,980 (+)Ensembl
RefSeq Acc Id: XM_038485611   ⟹   XP_038341539
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1921,774,624 - 21,804,337 (+)NCBI
RefSeq Acc Id: XM_038485612   ⟹   XP_038341540
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1921,774,298 - 21,804,337 (+)NCBI
RefSeq Acc Id: XM_038547378   ⟹   XP_038403306
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0922,157,897 - 22,187,909 (+)NCBI
RefSeq Acc Id: XM_038603195   ⟹   XP_038459123
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha921,680,267 - 21,709,943 (+)NCBI
RefSeq Acc Id: XM_038611361   ⟹   XP_038467289
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0922,033,476 - 22,063,078 (+)NCBI
RefSeq Acc Id: XM_038611362   ⟹   XP_038467290
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0922,033,150 - 22,063,078 (+)NCBI
RefSeq Acc Id: XM_038676553   ⟹   XP_038532481
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0923,000,570 - 23,030,254 (+)NCBI
RefSeq Acc Id: XM_038676554   ⟹   XP_038532482
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0923,000,244 - 23,030,254 (+)NCBI
RefSeq Acc Id: XM_537646   ⟹   XP_537646
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1922,207,501 - 22,237,497 (+)NCBI
Dog10K_Boxer_Tasha921,679,941 - 21,709,943 (+)NCBI
Sequence:
RefSeq Acc Id: XP_537646   ⟸   XM_537646
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SLK5 (UniProtKB/TrEMBL),   A0A8I3MXG1 (UniProtKB/TrEMBL),   A0A8C0NHM0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000023713   ⟸   ENSCAFT00000025539
Ensembl Acc Id: ENSCAFP00000042966   ⟸   ENSCAFT00000046104
RefSeq Acc Id: XP_038341540   ⟸   XM_038485612
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038341539   ⟸   XM_038485611
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038467290   ⟸   XM_038611362
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038467289   ⟸   XM_038611361
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038532482   ⟸   XM_038676554
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SLK5 (UniProtKB/TrEMBL),   A0A8I3MXG1 (UniProtKB/TrEMBL),   A0A8C0NHM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038532481   ⟸   XM_038676553
- Peptide Label: isoform X1
- UniProtKB: A0A8I3N3P1 (UniProtKB/TrEMBL),   A0A8P0NTK0 (UniProtKB/TrEMBL),   A0A8C0NHM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038459123   ⟸   XM_038603195
- Peptide Label: isoform X1
- UniProtKB: A0A8I3N3P1 (UniProtKB/TrEMBL),   A0A8P0NTK0 (UniProtKB/TrEMBL),   A0A8C0NHM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038403306   ⟸   XM_038547378
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NHM0 (UniProtKB/TrEMBL),   A0A8C0SLK5 (UniProtKB/TrEMBL),   A0A8I3MXG1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845011373   ⟸   ENSCAFT00845014679
Ensembl Acc Id: ENSCAFP00845011528   ⟸   ENSCAFT00845014873
Ensembl Acc Id: ENSCAFP00845011307   ⟸   ENSCAFT00845014593
Protein Domains
Toprim

Promoters
RGD ID:13684543
Promoter ID:EPDNEW_C2610
Type:multiple initiation site
Name:TOP2A_1
Description:DNA topoisomerase II alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1922,207,529 - 22,207,589EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016090 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030015461 UniProtKB/TrEMBL
  ENSCAFG00040014092 UniProtKB/TrEMBL
  ENSCAFG00845008263 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025539.5 UniProtKB/TrEMBL
  ENSCAFT00000046104.4 UniProtKB/TrEMBL
  ENSCAFT00000096981.1 UniProtKB/TrEMBL
  ENSCAFT00030028867.1 UniProtKB/TrEMBL
  ENSCAFT00040026747.1 UniProtKB/TrEMBL
  ENSCAFT00040026960.1 UniProtKB/TrEMBL
  ENSCAFT00845014593 ENTREZGENE
  ENSCAFT00845014593.1 UniProtKB/TrEMBL
  ENSCAFT00845014679.1 UniProtKB/TrEMBL
  ENSCAFT00845014873 ENTREZGENE
  ENSCAFT00845014873.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.268.10 UniProtKB/TrEMBL
  3.30.1360.40 UniProtKB/TrEMBL
  3.30.1490.30 UniProtKB/TrEMBL
  3.30.230.10 UniProtKB/TrEMBL
  3.30.565.10 UniProtKB/TrEMBL
  3.40.50.670 UniProtKB/TrEMBL
  3.90.199.10 UniProtKB/TrEMBL
InterPro DNA_Topoisomerase_II UniProtKB/TrEMBL
  DTHCT UniProtKB/TrEMBL
  HATPase_C UniProtKB/TrEMBL
  HATPase_C_sf UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
  Topo_IIA UniProtKB/TrEMBL
  Topo_IIA-like_dom_sf UniProtKB/TrEMBL
  Topo_IIA_A/C UniProtKB/TrEMBL
  Topo_IIA_A/C_ab UniProtKB/TrEMBL
  Topo_IIA_A_a_sf UniProtKB/TrEMBL
  Topo_IIA_B_C UniProtKB/TrEMBL
  Topo_IIA_bsu_dom2 UniProtKB/TrEMBL
  TopoII_euk UniProtKB/TrEMBL
  TopoIIA_CS UniProtKB/TrEMBL
  TOPRIM_C UniProtKB/TrEMBL
  TOPRIM_domain UniProtKB/TrEMBL
  TOPRIM_TopoII UniProtKB/TrEMBL
NCBI Gene TOP2A ENTREZGENE
PANTHER DNA TOPOISOMERASE 2-ALPHA UniProtKB/TrEMBL
  DNA TOPOISOMERASE/GYRASE UniProtKB/TrEMBL
Pfam DNA_gyraseB UniProtKB/TrEMBL
  DNA_topoisoIV UniProtKB/TrEMBL
  DTHCT UniProtKB/TrEMBL
  HATPase_c UniProtKB/TrEMBL
  Toprim UniProtKB/TrEMBL
  TOPRIM_C UniProtKB/TrEMBL
PRINTS TOPISMRASEII UniProtKB/TrEMBL
  TPI2FAMILY UniProtKB/TrEMBL
PROSITE TOPOISOMERASE_II UniProtKB/TrEMBL
  TOPRIM UniProtKB/TrEMBL
SMART TOP2c UniProtKB/TrEMBL
  TOP4c UniProtKB/TrEMBL
Superfamily-SCOP SSF54211 UniProtKB/TrEMBL
  SSF55874 UniProtKB/TrEMBL
  SSF56719 UniProtKB/TrEMBL
UniProt A0A8C0NHM0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SLK5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SNU9_CANLF UniProtKB/TrEMBL
  A0A8I3MXG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MZ20_CANLF UniProtKB/TrEMBL
  A0A8I3N3P1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NTK0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TRR3_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:49098 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-08 TOP2A  DNA topoisomerase II alpha    topoisomerase (DNA) II alpha  Symbol and/or name change 5135510 APPROVED