SAP30L (SAP30 like) - Rat Genome Database

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Gene: SAP30L (SAP30 like) Canis lupus familiaris
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Symbol: SAP30L
Name: SAP30 like
RGD ID: 12208860
Description: ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); polycystic ovary syndrome (ortholog); FOUND IN fibrillar center (inferred); nucleolus (inferred); nucleoplasm (inferred); INTERACTS WITH bisphenol A
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone deacetylase complex subunit SAP30L
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1455,247,912 - 55,261,655 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl455,252,938 - 55,262,207 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha455,139,143 - 55,152,822 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0455,682,409 - 55,696,086 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl455,687,428 - 55,696,091 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1455,512,820 - 55,526,494 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0455,611,261 - 55,624,938 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0456,113,840 - 56,127,525 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SAP30L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1455,247,912 - 55,261,655 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl455,252,938 - 55,262,207 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha455,139,143 - 55,152,822 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0455,682,409 - 55,696,086 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl455,687,428 - 55,696,091 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1455,512,820 - 55,526,494 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0455,611,261 - 55,624,938 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0456,113,840 - 56,127,525 (-)NCBIUU_Cfam_GSD_1.0
SAP30L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385154,445,997 - 154,461,053 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5154,445,997 - 154,461,053 (+)EnsemblGRCh38hg38GRCh38
GRCh375153,825,557 - 153,840,613 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365153,805,776 - 153,816,067 (+)NCBINCBI36Build 36hg18NCBI36
Celera5149,901,175 - 149,916,278 (+)NCBICelera
Cytogenetic Map5q33.2NCBI
HuRef5148,966,241 - 148,981,334 (+)NCBIHuRef
CHM1_15153,256,318 - 153,273,030 (+)NCBICHM1_1
T2T-CHM13v2.05154,979,944 - 154,995,012 (+)NCBIT2T-CHM13v2.0
Sap30l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391157,692,439 - 57,705,707 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1157,692,463 - 57,701,043 (+)EnsemblGRCm39 Ensembl
GRCm381157,801,637 - 57,810,615 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1157,801,637 - 57,810,217 (+)EnsemblGRCm38mm10GRCm38
MGSCv371157,615,139 - 57,624,117 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361157,617,832 - 57,626,810 (+)NCBIMGSCv36mm8
Celera1162,554,055 - 62,562,570 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1135.27NCBI
Sap30l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81042,480,201 - 42,488,139 (+)NCBIGRCr8
mRatBN7.21041,979,730 - 41,992,307 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1041,979,687 - 41,987,658 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1046,642,271 - 46,650,201 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01046,132,533 - 46,140,459 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01041,636,157 - 41,644,084 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01043,224,151 - 43,231,864 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1043,224,269 - 43,231,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01043,023,126 - 43,031,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41043,396,414 - 43,404,655 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11043,410,173 - 43,418,013 (+)NCBI
Celera1041,271,789 - 41,279,601 (+)NCBICelera
Cytogenetic Map10q22NCBI
Sap30l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554088,827,738 - 8,832,588 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554088,827,744 - 8,832,588 (+)NCBIChiLan1.0ChiLan1.0
SAP30L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24149,653,189 - 149,668,266 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15147,792,734 - 147,807,812 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05149,847,937 - 149,863,052 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15155,846,056 - 155,861,300 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5155,846,866 - 155,856,273 (+)Ensemblpanpan1.1panPan2
Sap30l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213109,856,463 - 109,870,339 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365158,305,799 - 8,319,685 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365158,305,809 - 8,319,685 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAP30L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1668,695,900 - 68,709,742 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11668,695,892 - 68,709,952 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21674,604,899 - 74,619,284 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SAP30L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12356,900,806 - 56,916,238 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2356,900,843 - 56,916,259 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603420,747,414 - 20,762,855 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sap30l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473334,744,554 - 34,757,764 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473334,744,638 - 34,757,727 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SAP30L
138 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000027976   ⟹   ENSCAFP00000026019
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl455,252,938 - 55,262,207 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845008887   ⟹   ENSCAFP00845007000
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl455,687,428 - 55,696,091 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845008893   ⟹   ENSCAFP00845007003
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl455,687,428 - 55,696,071 (-)Ensembl
RefSeq Acc Id: XM_038473862   ⟹   XP_038329790
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1455,512,820 - 55,526,494 (-)NCBI
RefSeq Acc Id: XM_038473863   ⟹   XP_038329791
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1455,512,820 - 55,526,494 (-)NCBI
RefSeq Acc Id: XM_038496883   ⟹   XP_038352811
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha455,139,143 - 55,152,822 (-)NCBI
RefSeq Acc Id: XM_038534952   ⟹   XP_038390880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0456,113,840 - 56,127,525 (-)NCBI
RefSeq Acc Id: XM_038534953   ⟹   XP_038390881
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0456,113,840 - 56,127,525 (-)NCBI
RefSeq Acc Id: XM_038599252   ⟹   XP_038455180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0455,611,261 - 55,624,938 (-)NCBI
RefSeq Acc Id: XM_038599253   ⟹   XP_038455181
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0455,611,261 - 55,624,938 (-)NCBI
RefSeq Acc Id: XM_038663557   ⟹   XP_038519485
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0455,682,409 - 55,696,086 (-)NCBI
RefSeq Acc Id: XM_038663558   ⟹   XP_038519486
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0455,682,409 - 55,696,086 (-)NCBI
RefSeq Acc Id: XM_849837   ⟹   XP_854930
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1455,247,912 - 55,261,655 (-)NCBI
Dog10K_Boxer_Tasha455,139,143 - 55,152,822 (-)NCBI
Sequence:
RefSeq Acc Id: XP_854930   ⟸   XM_849837
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LEJ6 (UniProtKB/TrEMBL),   A0A8C0QG70 (UniProtKB/TrEMBL),   A0A8I3MY90 (UniProtKB/TrEMBL),   A0A8C0MQY5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000026019   ⟸   ENSCAFT00000027976
RefSeq Acc Id: XP_038329791   ⟸   XM_038473863
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038329790   ⟸   XM_038473862
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038455181   ⟸   XM_038599253
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038455180   ⟸   XM_038599252
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038519486   ⟸   XM_038663558
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LEJ6 (UniProtKB/TrEMBL),   A0A8C0QG70 (UniProtKB/TrEMBL),   A0A8I3MY90 (UniProtKB/TrEMBL),   A0A8C0MQY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519485   ⟸   XM_038663557
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MPM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038352811   ⟸   XM_038496883
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MPM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390881   ⟸   XM_038534953
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LEJ6 (UniProtKB/TrEMBL),   A0A8C0MQY5 (UniProtKB/TrEMBL),   A0A8C0QG70 (UniProtKB/TrEMBL),   A0A8I3MY90 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390880   ⟸   XM_038534952
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MPM3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845007000   ⟸   ENSCAFT00845008887
Ensembl Acc Id: ENSCAFP00845007003   ⟸   ENSCAFT00845008893

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017642 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030008420 UniProtKB/TrEMBL
  ENSCAFG00040006455 UniProtKB/TrEMBL
  ENSCAFG00845004964 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000027976.6 UniProtKB/TrEMBL
  ENSCAFT00000098043.1 UniProtKB/TrEMBL
  ENSCAFT00030015463.1 UniProtKB/TrEMBL
  ENSCAFT00030015559.1 UniProtKB/TrEMBL
  ENSCAFT00030015628.1 UniProtKB/TrEMBL
  ENSCAFT00040012008.1 UniProtKB/TrEMBL
  ENSCAFT00040012065.1 UniProtKB/TrEMBL
  ENSCAFT00040012091.1 UniProtKB/TrEMBL
  ENSCAFT00845008887 ENTREZGENE
  ENSCAFT00845008887.1 UniProtKB/TrEMBL
  ENSCAFT00845008893.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1800.30 UniProtKB/TrEMBL
  6.10.160.20 UniProtKB/TrEMBL
InterPro His_deAcase_SAP30/SAP30L UniProtKB/TrEMBL
  SAP30_C_sf UniProtKB/TrEMBL
  SAP30_Sin3-bd UniProtKB/TrEMBL
  SAP30_zn-finger UniProtKB/TrEMBL
NCBI Gene SAP30L ENTREZGENE
PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30L UniProtKB/TrEMBL
  PTHR13286 UniProtKB/TrEMBL
Pfam SAP30_Sin3_bdg UniProtKB/TrEMBL
  zf-SAP30 UniProtKB/TrEMBL
UniProt A0A8C0LEJ6 ENTREZGENE
  A0A8C0MPM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MQY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MR37_CANLF UniProtKB/TrEMBL
  A0A8C0QG70 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MY90 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MYY7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:45862 ENTREZGENE