BICD2 (BICD cargo adaptor 2) - Rat Genome Database

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Gene: BICD2 (BICD cargo adaptor 2) Canis lupus familiaris
Analyze
Symbol: BICD2
Name: BICD cargo adaptor 2
RGD ID: 12191581
Description: ENCODES a protein that exhibits cytoskeletal anchor activity (inferred); dynactin binding (inferred); dynein complex binding (inferred); INVOLVED IN microtubule-based movement (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant distal hereditary motor neuronopathy (ortholog); autosomal dominant distal hereditary motor neuronopathy 12 (ortholog); FOUND IN annulate lamellae (inferred); centrosome (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein bicaudal D homolog 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,697,050 - 98,736,296 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,697,075 - 98,734,240 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,091,059 - 99,130,138 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0199,313,974 - 99,353,079 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl199,313,980 - 99,353,078 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1198,927,112 - 98,966,197 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,662,724 - 98,701,758 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,418,306 - 99,457,372 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BICD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,697,050 - 98,736,296 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,697,075 - 98,734,240 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,091,059 - 99,130,138 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0199,313,974 - 99,353,079 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl199,313,980 - 99,353,078 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1198,927,112 - 98,966,197 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,662,724 - 98,701,758 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,418,306 - 99,457,372 (+)NCBIUU_Cfam_GSD_1.0
BICD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38992,711,363 - 92,764,833 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl992,711,363 - 92,764,833 (-)EnsemblGRCh38hg38GRCh38
GRCh37995,473,645 - 95,527,115 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36994,513,466 - 94,566,904 (-)NCBINCBI36Build 36hg18NCBI36
Build 34992,553,199 - 92,606,638NCBI
Celera965,915,700 - 65,969,136 (-)NCBICelera
Cytogenetic Map9q22.31NCBI
HuRef965,151,961 - 65,205,073 (-)NCBIHuRef
CHM1_1995,620,081 - 95,673,514 (-)NCBICHM1_1
T2T-CHM13v2.09104,877,924 - 104,931,411 (-)NCBIT2T-CHM13v2.0
Bicd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,495,025 - 49,540,502 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1349,495,061 - 49,540,502 (+)EnsemblGRCm39 Ensembl
GRCm381349,341,549 - 49,387,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,341,585 - 49,387,026 (+)EnsemblGRCm38mm10GRCm38
MGSCv371349,436,918 - 49,482,394 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361349,353,486 - 49,398,962 (+)NCBIMGSCv36mm8
Celera1350,431,086 - 50,476,523 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1325.22NCBI
Bicd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81715,449,011 - 15,511,423 (-)NCBIGRCr8
mRatBN7.21715,259,773 - 15,304,889 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1715,259,773 - 15,304,889 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1715,146,828 - 15,191,665 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01716,751,888 - 16,796,726 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,073,624 - 15,118,460 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01715,673,649 - 15,718,035 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,673,650 - 15,718,035 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01717,731,018 - 17,775,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41721,214,977 - 21,260,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11721,214,995 - 21,260,709 (-)NCBI
Celera1714,990,557 - 15,035,504 (-)NCBICelera
Cytogenetic Map17p14NCBI
Bicd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555155,061,005 - 5,103,179 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555155,060,176 - 5,105,298 (+)NCBIChiLan1.0ChiLan1.0
BICD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21146,660,629 - 46,717,041 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1946,663,017 - 46,719,493 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0963,834,515 - 63,890,904 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1991,905,982 - 91,959,186 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl991,909,771 - 91,959,131 (-)Ensemblpanpan1.1panPan2
Bicd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049448,071,268 - 8,119,191 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364872,255,882 - 2,335,731 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364872,287,736 - 2,335,674 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,393,277 - 42,456,782 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1342,393,270 - 42,456,821 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2343,627,163 - 43,647,661 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BICD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112103,232,602 - 103,281,317 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12103,232,327 - 103,281,288 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603891,504,437 - 91,553,420 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bicd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248683,598,688 - 3,650,731 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248683,598,523 - 3,649,641 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BICD2
399 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000003591   ⟹   ENSCAFP00000003325
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl198,697,075 - 98,733,406 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000045890   ⟹   ENSCAFP00000040413
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl198,697,075 - 98,734,240 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000065014   ⟹   ENSCAFP00000065760
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl198,712,917 - 98,733,406 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000074533   ⟹   ENSCAFP00000060876
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl198,697,075 - 98,734,240 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845042801   ⟹   ENSCAFP00845033552
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl199,313,980 - 99,353,078 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845042881   ⟹   ENSCAFP00845033613
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl199,314,000 - 99,353,068 (+)Ensembl
RefSeq Acc Id: XM_005615992   ⟹   XP_005616049
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1198,697,051 - 98,736,296 (+)NCBI
Dog10K_Boxer_Tasha199,091,059 - 99,130,138 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038466671   ⟹   XP_038322599
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1198,927,112 - 98,966,197 (+)NCBI
RefSeq Acc Id: XM_038466672   ⟹   XP_038322600
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1198,927,112 - 98,966,197 (+)NCBI
RefSeq Acc Id: XM_038527392   ⟹   XP_038383320
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0199,418,306 - 99,457,372 (+)NCBI
RefSeq Acc Id: XM_038527393   ⟹   XP_038383321
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0199,418,306 - 99,457,372 (+)NCBI
RefSeq Acc Id: XM_038591691   ⟹   XP_038447619
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0198,662,724 - 98,701,758 (+)NCBI
RefSeq Acc Id: XM_038591692   ⟹   XP_038447620
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0198,662,724 - 98,701,758 (+)NCBI
RefSeq Acc Id: XM_038655485   ⟹   XP_038511413
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0199,313,974 - 99,353,079 (+)NCBI
RefSeq Acc Id: XM_038655486   ⟹   XP_038511414
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0199,313,974 - 99,353,079 (+)NCBI
RefSeq Acc Id: XM_541330   ⟹   XP_541330
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1198,697,050 - 98,736,296 (+)NCBI
Dog10K_Boxer_Tasha199,091,059 - 99,130,138 (+)NCBI
Sequence:
RefSeq Acc Id: XP_541330   ⟸   XM_541330
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RAA3 (UniProtKB/TrEMBL),   A0A8C0K617 (UniProtKB/TrEMBL),   A0A8I3PLZ6 (UniProtKB/TrEMBL),   A0A8C0Q277 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005616049   ⟸   XM_005615992
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PQ84 (UniProtKB/TrEMBL),   A0A8I3PLU4 (UniProtKB/TrEMBL),   A0A8C0Q277 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000060876   ⟸   ENSCAFT00000074533
Ensembl Acc Id: ENSCAFP00000040413   ⟸   ENSCAFT00000045890
Ensembl Acc Id: ENSCAFP00000003325   ⟸   ENSCAFT00000003591
Ensembl Acc Id: ENSCAFP00000065760   ⟸   ENSCAFT00000065014
RefSeq Acc Id: XP_038322599   ⟸   XM_038466671
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038322600   ⟸   XM_038466672
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038447619   ⟸   XM_038591691
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038447620   ⟸   XM_038591692
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038511413   ⟸   XM_038655485
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RAA3 (UniProtKB/TrEMBL),   A0A8C0K617 (UniProtKB/TrEMBL),   A0A8I3PLZ6 (UniProtKB/TrEMBL),   A0A8C0Q277 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038511414   ⟸   XM_038655486
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PQ84 (UniProtKB/TrEMBL),   A0A8I3PLU4 (UniProtKB/TrEMBL),   A0A8C0Q277 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038383320   ⟸   XM_038527392
- Peptide Label: isoform X1
- UniProtKB: A0A8C0K617 (UniProtKB/TrEMBL),   A0A8C0Q277 (UniProtKB/TrEMBL),   A0A8C0RAA3 (UniProtKB/TrEMBL),   A0A8I3PLZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038383321   ⟸   XM_038527393
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PQ84 (UniProtKB/TrEMBL),   A0A8C0Q277 (UniProtKB/TrEMBL),   A0A8I3PLU4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845033552   ⟸   ENSCAFT00845042801
Ensembl Acc Id: ENSCAFP00845033613   ⟸   ENSCAFT00845042881

Promoters
RGD ID:13682122
Promoter ID:EPDNEW_C192
Type:initiation region
Name:BICD2_1
Description:BICD cargo adaptor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1198,697,072 - 98,697,132EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002289 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001515 UniProtKB/TrEMBL
  ENSCAFG00040001476 UniProtKB/TrEMBL
  ENSCAFG00845024242 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000003591.4 UniProtKB/TrEMBL
  ENSCAFT00000045890.4 UniProtKB/TrEMBL
  ENSCAFT00030002706.1 UniProtKB/TrEMBL
  ENSCAFT00030002719.1 UniProtKB/TrEMBL
  ENSCAFT00040002812.1 UniProtKB/TrEMBL
  ENSCAFT00040002829.1 UniProtKB/TrEMBL
  ENSCAFT00040002841.1 UniProtKB/TrEMBL
  ENSCAFT00845042801 ENTREZGENE
  ENSCAFT00845042801.1 UniProtKB/TrEMBL
  ENSCAFT00845042881 ENTREZGENE
  ENSCAFT00845042881.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.2470 UniProtKB/TrEMBL
InterPro BICD UniProtKB/TrEMBL
KEGG Report cfa:484214 UniProtKB/TrEMBL
NCBI Gene BICD2 ENTREZGENE
PANTHER PROTEIN BICAUDAL D HOMOLOG 2 UniProtKB/TrEMBL
  PTHR31233 UniProtKB/TrEMBL
Pfam BicD UniProtKB/TrEMBL
UniProt A0A8C0K617 ENTREZGENE
  A0A8C0PQ84 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q277 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RAA3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PLU4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PLZ6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38451 ENTREZGENE