ATP6V0C (ATPase H+ transporting V0 subunit c) - Rat Genome Database

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Gene: ATP6V0C (ATPase H+ transporting V0 subunit c) Canis lupus familiaris
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Symbol: ATP6V0C
Name: ATPase H+ transporting V0 subunit c
RGD ID: 12189335
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); ubiquitin protein ligase binding (inferred); INVOLVED IN negative regulation of autophagic cell death (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); early-onset epilepsy 3 (ortholog); epilepsy (ortholog); FOUND IN synaptic vesicle (ortholog); synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase 16 kDa proteolipid subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,519,869 - 38,525,217 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,520,765 - 38,525,062 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,758,250 - 39,763,598 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,829,102 - 38,834,450 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,829,102 - 38,834,443 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,514,259 - 38,519,609 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,486,868 - 38,492,219 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0638,962,951 - 38,968,303 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ATP6V0C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,519,869 - 38,525,217 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,520,765 - 38,525,062 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,758,250 - 39,763,598 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,829,102 - 38,834,450 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,829,102 - 38,834,443 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,514,259 - 38,519,609 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,486,868 - 38,492,219 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0638,962,951 - 38,968,303 (-)NCBIUU_Cfam_GSD_1.0
ATP6V0C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,513,726 - 2,520,218 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,513,952 - 2,520,218 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,563,727 - 2,570,219 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,503,954 - 2,510,220 (+)NCBINCBI36Build 36hg18NCBI36
Build 34162,503,953 - 2,510,219NCBI
Celera162,755,525 - 2,785,155 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,489,699 - 2,496,194 (+)NCBIHuRef
CHM1_1162,563,664 - 2,570,161 (+)NCBICHM1_1
T2T-CHM13v2.0162,535,856 - 2,542,340 (+)NCBIT2T-CHM13v2.0
Atp6v0c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,382,839 - 24,388,652 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,382,840 - 24,388,676 (-)EnsemblGRCm39 Ensembl
GRCm381724,163,865 - 24,169,678 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,163,866 - 24,169,702 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,300,833 - 24,306,374 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,891,488 - 23,897,029 (-)NCBIMGSCv36mm8
Celera1724,669,200 - 24,674,661 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.29NCBI
Atp6v0c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,700,764 - 13,707,147 (-)NCBIGRCr8
mRatBN7.21013,196,204 - 13,202,580 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,196,204 - 13,201,500 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,941,023 - 17,946,085 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,429,860 - 17,434,922 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,928,324 - 12,933,402 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,537,031 - 13,543,407 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,537,033 - 13,542,077 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,352,991 - 13,359,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,415,671 - 13,420,715 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,415,670 - 13,420,715 (-)NCBI
Celera1012,882,252 - 12,887,296 (-)NCBICelera
Cytogenetic Map10q12NCBI
Atp6v0c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,791,795 - 14,798,066 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,791,795 - 14,798,066 (-)NCBIChiLan1.0ChiLan1.0
ATP6V0C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2183,015,432 - 3,021,889 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,796,438 - 6,802,895 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,370,460 - 1,376,775 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,613,096 - 2,619,204 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,613,096 - 2,619,204 (+)Ensemblpanpan1.1panPan2
Atp6v0c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,167,247 - 105,173,070 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366941,536,393 - 1,542,218 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1339,532,707 - 39,538,704 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,700,733 - 42,706,549 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,387,891 - 2,394,111 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,387,812 - 2,394,180 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606828,630,936 - 28,637,307 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824267,102 - 272,893 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824267,102 - 272,893 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP6V0C
41 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000030769   ⟹   ENSCAFP00000028603
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl638,520,765 - 38,525,062 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845007008   ⟹   ENSCAFP00845005591
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl638,829,102 - 38,834,443 (-)Ensembl
RefSeq Acc Id: XM_038479435   ⟹   XP_038335363
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1638,514,259 - 38,519,609 (-)NCBI
RefSeq Acc Id: XM_038540695   ⟹   XP_038396623
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0638,962,951 - 38,968,303 (-)NCBI
RefSeq Acc Id: XM_038604817   ⟹   XP_038460745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0638,486,868 - 38,492,219 (-)NCBI
RefSeq Acc Id: XM_038669501   ⟹   XP_038525429
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0638,829,102 - 38,834,450 (-)NCBI
RefSeq Acc Id: XM_537002   ⟹   XP_537002
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1638,519,869 - 38,525,217 (-)NCBI
Dog10K_Boxer_Tasha639,758,250 - 39,763,598 (-)NCBI
Sequence:
RefSeq Acc Id: XP_537002   ⟸   XM_537002
- UniProtKB: A0A8C0Z2A2 (UniProtKB/TrEMBL),   A0A8C0LL28 (UniProtKB/TrEMBL),   A0A8I3RRR2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000028603   ⟸   ENSCAFT00000030769
RefSeq Acc Id: XP_038335363   ⟸   XM_038479435
RefSeq Acc Id: XP_038460745   ⟸   XM_038604817
RefSeq Acc Id: XP_038525429   ⟸   XM_038669501
- UniProtKB: A0A8C0Z2A2 (UniProtKB/TrEMBL),   A0A8C0LL28 (UniProtKB/TrEMBL),   A0A8I3RRR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038396623   ⟸   XM_038540695
- UniProtKB: A0A8C0LL28 (UniProtKB/TrEMBL),   A0A8C0Z2A2 (UniProtKB/TrEMBL),   A0A8I3RRR2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845005591   ⟸   ENSCAFT00845007008

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019363 Ensembl
  ENSCAFG00000052718 UniProtKB/TrEMBL
  ENSCAFG00030001642 UniProtKB/TrEMBL
  ENSCAFG00040019630 UniProtKB/TrEMBL
  ENSCAFG00845003893 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000100837.1 UniProtKB/TrEMBL
  ENSCAFT00030002971.1 UniProtKB/TrEMBL
  ENSCAFT00040036317.1 UniProtKB/TrEMBL
  ENSCAFT00845007008 ENTREZGENE
  ENSCAFT00845007008.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.610 UniProtKB/TrEMBL
InterPro ATPase_proteolipid_c-like_dom UniProtKB/TrEMBL
  ATPase_proteolipid_csu UniProtKB/TrEMBL
  ATPase_proteolipid_su_C_euk UniProtKB/TrEMBL
  F/V-ATP_Csub_sf UniProtKB/TrEMBL
KEGG Report cfa:479877 UniProtKB/TrEMBL
NCBI Gene ATP6V0C ENTREZGENE
PANTHER V-TYPE PROTON ATPASE 16 KDA PROTEOLIPID SUBUNIT UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT UniProtKB/TrEMBL
Pfam ATP-synt_C UniProtKB/TrEMBL
PRINTS VACATPASE UniProtKB/TrEMBL
Superfamily-SCOP SSF81333 UniProtKB/TrEMBL
UniProt A0A8C0LL28 ENTREZGENE
  A0A8C0Z2A2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RRR2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38272 ENTREZGENE