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Gene: NOP2 (NOP2 nucleolar protein) Canis lupus familiaris

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Symbol:

NOP2

Name:

NOP2 nucleolar protein

RGD ID:

12180047

Description:

ENCODES a protein that exhibits methyltransferase activity (inferred); RNA binding (inferred); RNA methyltransferase activity (inferred); INVOLVED IN blastocyst formation (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); peroxisome biogenesis disorder 2B (ortholog); FOUND IN nucleolus (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

NOL1; NOP2 nucleolar protein homolog; nucleolar protein 1, 120kDa; probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NOP2 (NOP2 nucleolar protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Nop2 (NOP2 nucleolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Nop2 (NOP2 nucleolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nop2 (NOP2 nucleolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NOP2 (NOP2 nucleolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nop2 (NOP2 nucleolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NOP2 (NOP2 nucleolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NOP2 (NOP2 nucleolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nop2 (NOP2 nucleolar protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	38,441,259 - 38,453,946 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	38,441,690 - 38,453,824 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	8,162,718 - 8,175,429 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	38,795,791 - 38,808,510 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	38,795,860 - 38,808,510 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	38,667,821 - 38,680,527 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	38,709,346 - 38,722,054 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	7,641,408 - 7,654,127 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Hyperphosphatemic Familial Tumoral Calcinosis 1 (ISO)

lymphoproliferative syndrome 2 (ISO)

peroxisome biogenesis disorder 2B (ISO)

Temtamy syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blastocyst formation (ISO)

maturation of LSU-rRNA (IBA)

methylation (IEA)

positive regulation of cell population proliferation (IEA)

regulation of signal transduction by p53 class mediator (IEA)

ribosomal large subunit assembly (IEA)

ribosomal large subunit biogenesis (IEA)

ribosome biogenesis (IEA)

RNA methylation (IEA)

RNA processing (IEA)

rRNA base methylation (IBA)

rRNA processing (IEA)

Cellular Component

nucleolus (IBA,IEA)

nucleus (IEA)

Molecular Function

methyltransferase activity (IEA)

protein binding (ISO)

RNA binding (IEA)

RNA methyltransferase activity (IEA)

rRNA (cytosine-C5-)-methyltransferase activity (IBA,IEA)

S-adenosylmethionine-dependent methyltransferase activity (IEA)

transferase activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

NOP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	38,441,259 - 38,453,946 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	38,441,690 - 38,453,824 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	8,162,718 - 8,175,429 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	38,795,791 - 38,808,510 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	38,795,860 - 38,808,510 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	38,667,821 - 38,680,527 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	38,709,346 - 38,722,054 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	7,641,408 - 7,654,127 (-)	NCBI		UU_Cfam_GSD_1.0

NOP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	6,556,871 - 6,568,291 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	6,556,863 - 6,568,691 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	6,666,037 - 6,677,457 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	6,536,298 - 6,547,741 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	6,536,289 - 6,547,345	NCBI
Celera	12	8,282,899 - 8,294,342 (-)	NCBI		Celera
Cytogenetic Map	12	p13.31	NCBI
HuRef	12	6,520,171 - 6,531,576 (-)	NCBI		HuRef
CHM1_1	12	6,665,044 - 6,676,501 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	6,567,230 - 6,578,651 (-)	NCBI		T2T-CHM13v2.0

Nop2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	125,108,829 - 125,121,716 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	125,108,872 - 125,121,716 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	125,131,883 - 125,144,753 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	125,131,909 - 125,144,753 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	125,081,901 - 125,094,771 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	125,097,558 - 125,110,372 (+)	NCBI		MGSCv36	mm8
Celera	6	126,801,863 - 126,814,607 (+)	NCBI		Celera
Cytogenetic Map	6	F2	NCBI
cM Map	6	59.32	NCBI

Nop2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	159,618,894 - 159,630,697 (+)	NCBI		GRCr8
mRatBN7.2	4	157,932,731 - 157,944,462 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	157,932,716 - 157,944,459 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	164,161,797 - 164,173,528 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	159,944,712 - 159,956,443 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	158,580,682 - 158,592,424 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	157,646,759 - 157,658,502 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	157,647,082 - 157,658,390 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	224,663,955 - 224,675,686 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	161,252,117 - 161,264,321 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	161,497,375 - 161,509,257 (+)	NCBI
Celera	4	146,669,575 - 146,681,484 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

Nop2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	4,180,573 - 4,190,490 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	4,180,463 - 4,190,827 (-)	NCBI	ChiLan1.0	ChiLan1.0

NOP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	12,118,734 - 12,130,299 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	12,115,491 - 12,127,002 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	6,687,763 - 6,699,234 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	6,606,036 - 6,617,260 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	6,606,036 - 6,617,260 (-)	Ensembl	panpan1.1		panPan2

Nop2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	102,547,510 - 102,560,568 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936709	1,215,100 - 1,228,117 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NOP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	64,106,098 - 64,115,579 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	64,106,013 - 64,115,582 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	66,463,609 - 66,473,180 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NOP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	6,590,518 - 6,601,981 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	6,590,642 - 6,601,552 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666063	1,622,901 - 1,634,416 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nop2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624860	3,273,944 - 3,284,150 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in NOP2
110 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005637232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038439191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038513837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038576582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038641680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000023862 ⟹ ENSCAFP00000022151

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	38,441,690 - 38,453,824 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845050875 ⟹ ENSCAFP00845039884

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	38,795,860 - 38,808,510 (+)	Ensembl

RefSeq Acc Id:

XM_005637232 ⟹ XP_005637289

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	38,441,259 - 38,453,946 (+)	NCBI
Dog10K_Boxer_Tasha	27	8,162,718 - 8,175,429 (-)	NCBI

Sequence:

show sequence

GCGGGCCGCGGGGTCAGCGCGCCTCCGTGCGCCTGCGTGAAGCGCTTCCTCCGCGCGCGGTGCC
GGAACCGTGACCTCGGGGCGCACGTGGAGTGTCGCGCCGCTTCCCCGGACCTCTGGGGCCTGGA
GCGTGTTTCAGAACTATGGGGCGCAAGTTGGACCCCACGAAGAAGGAGAAGCGCGGACCGGGCC
GGAAGGCTCGGAAACAGAAGGGCGCTGAGACCGAACTCGCTAGATTCTTGCCTGCAGCTGGTGA
TGAAAATTCTAAGAGGCTATCTAGTCGTGCTCGGAAGAGGGCAGCCAAGAGGAGATTGGGTTCT
GCTGAATCCCTTGCGATGCATAAGTTCCCTGGGGCCAAACCATTGCCTGGAAAACTACCCAAAG
GAATCTCTGGAGGAGCTGTCCAGACACCTGGCAAGAAGGGAGCCCAGCCCTTGCATCACGGTAC
TCAAGGCAAGAAGCGTCCAGCACTGACCCATAGCAGTGAGGAGGAAGAGGTGGAGGAGGAAGAC
TCTGAAGAGGATGGTGTGCTGAACCAGGAGGACCTCTGGGGCTCTGAGGACAGTGATGCTGATA
TGATAGATGACTACGGCGCCGACTCCGACTCAGAGGGCGAGGATGAAGATGAAGAGCTGCTGCC
CATTGAGAGGGCTGCTCAGAAGCAAAAGGTTCAGGAGGCTGTGGCTGGGGGCCAGTGGAGTGAG
GAGGAGACTGAGGAGGAAGAGGAGAAAGGGTCCCTTCAGTCATGCCCCCAAAAGGATGATGAGA
CAGAGGGGGGCCTACAGATCAATGTGGATGAGGAGGAGTCCTTTGTGCTGCCCCTTCCTGGGGA
GATGGAGCAGGATGCCCAGGCTCCAGACTTGCAACGGATTCACAAGCGCATCCAGGATATAGTG
GGAGTGCTGCGTGATTTTGGGACTCAGCGGGAGGAAGGTCGGTCTCGTTCTGAGTATCTGCACC
GGCTTCAGAAGGATCTGGCTACTTATTACTCCTATGGAGACTTCCTACTTGGCAAGCTTATGGA
CCTTTTTCCTCTGTCTGAGCTGGTGGAGTTCTTAGAAGCTAATGAGGTGCCTCGGCCCATCACC
CTCAGGACCAATACCTTGAAAACCCGACGTCGAGACCTCGCTCAGGCACTAATTAACCGTGGAG
TTAACCTGGATCCTCTGGGCAAGTGGTCAAAGACTGGACTAGTGGTATATGATTCTTCTGTGCC
CATTGGTGCTACCCCCGAGTACCTGGCTGGGTACTATATGCTTCAGGGAGCCTCCAGTATGTTG
CCGGTCATGGCCTTGGCACCCCAAGAACACGAACGGATCTTGGACATGTGTTGTGCCCCTGGAG
GAAAGACTAGCTACATAGCCCAGCTGATGAAGAACACAGGTGTGATTCTTGCCAACGATGCCAA
TGCTGAGCGGCTCAAGAGTGTCGTGGGTAATCTGCACCGGTTGGGAGTCACCAACACCATCATC
AGCCACTACGATGGGCGCCAGTTCCCCAAGGTGGTGGGGGGCTTTGACCGAGTACTTTTGGATG
CTCCTTGTAGTGGTACTGGGGTCATCTCCAAAGACCCAGCCGTGAAGACTAACAAGGATGAGAA
GGACATCTTGCGCTGTGCTCACCTTCAGAAGGAGTTGCTCCTGAGTGCTATTGACTCCGTCAAT
GCTACCTCCAAGACAGGAGGCTACCTTGTATACTGTACCTGTTCCATCATGGTGGAAGAGAATG
AGTGGGTGGTAGACTATGCCCTGAAAAAGAGGAACGTGCGGTTGGTGCCCACAGGTTTAGACTT
TGGCCAGGAGGGTTTCACTCGCTTTCGAGAAAGGCGCTTCCACCCTACCCTGCGTTCTACCCGC
CGCTTCTACCCTCATACCCACAATATGGATGGTTTCTTTATTGCCAAGTTCAAGAAATTCTCTA
ATTCTATCCCCCAGTCCCAGACAGGAAATTCTGCAGCTTCCACCCCTACAAGCCTAGACTTGCC
TGAGGTGAAGGGCCAGGTGACCCCCAAACCTGAGGGCAGCAGCCAGCCTGCCAAGAAGGCCAGA
GTGGCTATGAAAACAAAGCAGCAGTTGCAGAAACGGCAACATCCCAAAAAGGCCTCTTTCCAGA
AGCAGAATGGCATCTCCAAAGGGACAGACTCAGGATTGTCCACTGTATCTTGTGACACAAAGTC
CCAAGCTTCTTCCAAGCTCCAGGACAGCAGTCAGCCAACTCAAGAGATCAGGGGACCAAAGGTG
ACTAAGAAACTAAAGCAACAATCAGCTACGCTGCTATCCTCCAAGAAGGTTGCCTTCCGGAAGC
CGAATGGCCCTCCTAAGGGCACGGACACAGAAGTGCCTGTGCTATCCCTTTCCAAGACCCAGGA
CACACTCAAGCCTGAGGACTGGGTTCAGCCCCTTAGAAGCACCAGAGGGACCAAGAAAGTAAAG
CAGCAGTTGCCAGCACAGCCTTCCAAGAGAGCTGCCTTCCGGAAACAGAATGGCACCCCCAAGG
GACCTGAGACTCCCGCCATGTCCCCCCTTGATTCCAGCCAGCCCCCACCAGCAAAGAGGAGAAA
ATCTCAGTCCAGAGGCAGCAGCCATCCAGTGTTGTCTTAGATGAATGGCTGGTACTAGACTGGG
GTGGCTTACTGCTGTTGGCACAGGGTTGGAACTCTTAACCTCTGTGAGGCTGGTGTCCCCACTG
CGTATGAAATCTAATACACATTTTATAATCTCTG

hide sequence

RefSeq Acc Id:

XM_038439191 ⟹ XP_038295119

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	38,795,791 - 38,808,510 (+)	NCBI

RefSeq Acc Id:

XM_038513837 ⟹ XP_038369765

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	38,667,821 - 38,680,527 (+)	NCBI

RefSeq Acc Id:

XM_038576582 ⟹ XP_038432510

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	7,641,408 - 7,654,127 (-)	NCBI

RefSeq Acc Id:

XM_038641680 ⟹ XP_038497608

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	38,709,346 - 38,722,054 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005637289	(Get FASTA)	NCBI Sequence Viewer
	XP_038295119	(Get FASTA)	NCBI Sequence Viewer
	XP_038369765	(Get FASTA)	NCBI Sequence Viewer
	XP_038432510	(Get FASTA)	NCBI Sequence Viewer
	XP_038497608	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000022151.5
	ENSCAFP00030037531.1
	ENSCAFP00040031398.1
	ENSCAFP00845039884
	ENSCAFP00845039884.1

RefSeq Acc Id:

XP_005637289 ⟸ XM_005637232

- UniProtKB:

A0A8C0T457 (UniProtKB/TrEMBL), A0A8P0NGK1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGRKLDPTKKEKRGPGRKARKQKGAETELARFLPAAGDENSKRLSSRARKRAAKRRLGSAESLA
MHKFPGAKPLPGKLPKGISGGAVQTPGKKGAQPLHHGTQGKKRPALTHSSEEEEVEEEDSEEDG
VLNQEDLWGSEDSDADMIDDYGADSDSEGEDEDEELLPIERAAQKQKVQEAVAGGQWSEEETEE
EEEKGSLQSCPQKDDETEGGLQINVDEEESFVLPLPGEMEQDAQAPDLQRIHKRIQDIVGVLRD
FGTQREEGRSRSEYLHRLQKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNT
LKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGYYMLQGASSMLPVMAL
APQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDG
RQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKT
GGYLVYCTCSIMVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLRSTRRFYPH
THNMDGFFIAKFKKFSNSIPQSQTGNSAASTPTSLDLPEVKGQVTPKPEGSSQPAKKARVAMKT
KQQLQKRQHPKKASFQKQNGISKGTDSGLSTVSCDTKSQASSKLQDSSQPTQEIRGPKVTKKLK
QQSATLLSSKKVAFRKPNGPPKGTDTEVPVLSLSKTQDTLKPEDWVQPLRSTRGTKKVKQQLPA
QPSKRAAFRKQNGTPKGPETPAMSPLDSSQPPPAKRRKSQSRGSSHPVLS

hide sequence

Ensembl Acc Id:

ENSCAFP00000022151 ⟸ ENSCAFT00000023862

RefSeq Acc Id:

XP_038369765 ⟸ XM_038513837

RefSeq Acc Id:

XP_038497608 ⟸ XM_038641680

RefSeq Acc Id:	XP_038295119 ⟸ XM_038439191
- UniProtKB:	A0A8C0JMZ6 (UniProtKB/TrEMBL), A0A8I3Q5B1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038432510 ⟸ XM_038576582
- UniProtKB:	A0A8C0T457 (UniProtKB/TrEMBL), A0A8P0NGK1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845039884 ⟸ ENSCAFT00845050875

Protein Domains

SAM-dependent MTase RsmB/NOP-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000015034	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030023162	UniProtKB/TrEMBL
	ENSCAFG00040019177	UniProtKB/TrEMBL
	ENSCAFG00845028743	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000023862.5	UniProtKB/TrEMBL
	ENSCAFT00030043000.1	UniProtKB/TrEMBL
	ENSCAFT00040036050.1	UniProtKB/TrEMBL
	ENSCAFT00845050875	ENTREZGENE
	ENSCAFT00845050875.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.150	UniProtKB/TrEMBL
	Sun protein, domain 3	UniProtKB/TrEMBL
InterPro	Fmu/NOL1/Nop2p_CS	UniProtKB/TrEMBL
	MeTrfase_RsmB-F_NOP2_cat	UniProtKB/TrEMBL
	MeTrfase_RsmB/NOP2	UniProtKB/TrEMBL
	Nop2p	UniProtKB/TrEMBL
	RCMT	UniProtKB/TrEMBL
	RCMT_NOP2	UniProtKB/TrEMBL
	RsmB-like_ferredoxin	UniProtKB/TrEMBL
	SAM-dependent_MTases	UniProtKB/TrEMBL
KEGG Report	cfa:611645	UniProtKB/TrEMBL
NCBI Gene	NOP2	ENTREZGENE
PANTHER	28S RRNA (CYTOSINE(4447)-C(5))-METHYLTRANSFERASE-RELATED	UniProtKB/TrEMBL
	PTHR22807	UniProtKB/TrEMBL
Pfam	Methyltr_RsmB-F	UniProtKB/TrEMBL
	RsmF-B_ferredox	UniProtKB/TrEMBL
PRINTS	RCMTFAMILY	UniProtKB/TrEMBL
	RCMTNOP2	UniProtKB/TrEMBL
PROSITE	NOL1_NOP2_SUN	UniProtKB/TrEMBL
	SAM_MT_RSMB_NOP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53335	UniProtKB/TrEMBL
UniProt	A0A8C0JMZ6	ENTREZGENE
	A0A8C0T457	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3Q5B1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NGK1	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:43889	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar