SLC25A47 (solute carrier family 25 member 47) - Rat Genome Database

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Gene: SLC25A47 (solute carrier family 25 member 47) Canis lupus familiaris
Analyze
Symbol: SLC25A47
Name: solute carrier family 25 member 47
RGD ID: 12157119
Description: ENCODES a protein that exhibits acetyl-CoA transmembrane transporter activity (inferred); NAD transmembrane transporter activity (inferred); INVOLVED IN acetyl-CoA transport (inferred); NAD transmembrane transport (inferred); transmembrane transport (inferred); ASSOCIATED WITH hepatocellular carcinoma (ortholog); prostate cancer (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrial outer membrane (inferred); INTERACTS WITH bisphenol A
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1868,602,525 - 68,607,364 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl868,602,662 - 68,606,875 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha868,121,285 - 68,126,096 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0868,886,399 - 68,891,210 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl868,886,178 - 68,890,947 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1868,548,276 - 68,553,086 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0868,614,426 - 68,619,237 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0869,011,866 - 69,016,682 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC25A47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1868,602,525 - 68,607,364 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl868,602,662 - 68,606,875 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha868,121,285 - 68,126,096 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0868,886,399 - 68,891,210 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl868,886,178 - 68,890,947 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1868,548,276 - 68,553,086 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0868,614,426 - 68,619,237 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0869,011,866 - 69,016,682 (+)NCBIUU_Cfam_GSD_1.0
SLC25A47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814100,323,339 - 100,330,421 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14100,323,339 - 100,330,421 (+)EnsemblGRCh38hg38GRCh38
GRCh3714100,789,676 - 100,796,758 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,859,432 - 99,866,468 (+)NCBINCBI36Build 36hg18NCBI36
Build 341499,859,431 - 99,866,468NCBI
Celera1480,844,304 - 80,851,341 (+)NCBICelera
Cytogenetic Map14q32.2NCBI
HuRef1480,971,027 - 80,978,064 (+)NCBIHuRef
CHM1_114100,727,449 - 100,734,485 (+)NCBICHM1_1
T2T-CHM13v2.01494,556,363 - 94,563,446 (+)NCBIT2T-CHM13v2.0
Slc25a47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,815,740 - 108,822,741 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12108,801,972 - 108,822,741 (+)EnsemblGRCm39 Ensembl
GRCm3812108,849,833 - 108,856,815 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,836,046 - 108,856,815 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,089,339 - 110,095,025 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612109,298,936 - 109,304,622 (+)NCBIMGSCv36mm8
Celera12110,089,936 - 110,095,631 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1259.65NCBI
Slc25a47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86133,531,741 - 133,537,375 (+)NCBIGRCr8
mRatBN7.26127,767,365 - 127,773,000 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6127,767,305 - 127,773,005 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6127,890,369 - 127,896,003 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06128,185,415 - 128,191,049 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06127,544,781 - 127,550,416 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06132,762,306 - 132,767,940 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6132,762,280 - 132,768,379 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06141,932,382 - 141,938,016 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46133,192,144 - 133,197,778 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16133,198,330 - 133,203,965 (+)NCBI
Celera6125,318,263 - 125,323,897 (+)NCBICelera
Cytogenetic Map6q32NCBI
Slc25a47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543821,408,652 - 21,413,445 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543821,406,270 - 21,413,946 (+)NCBIChiLan1.0ChiLan1.0
SLC25A47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215101,458,295 - 101,483,417 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114100,674,789 - 100,701,046 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01480,927,765 - 80,952,992 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114100,258,385 - 100,265,491 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14100,258,391 - 100,265,448 (+)Ensemblpanpan1.1panPan2
Slc25a47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086406,100,896 - 6,105,914 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366043,978,061 - 3,980,958 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366043,976,677 - 3,981,572 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7121,192,433 - 121,210,374 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17121,204,213 - 121,210,376 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27128,664,421 - 128,674,962 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103229692
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12478,285,089 - 78,292,562 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2478,285,593 - 78,292,773 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605365,426,727 - 65,431,443 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247343,817,097 - 3,821,680 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247343,816,570 - 3,821,437 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC25A47
88 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 4 23 22 16 6 6 6 6 32 21 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000028408   ⟹   ENSCAFP00000026420
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl868,602,662 - 68,606,875 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845007699   ⟹   ENSCAFP00845006091
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl868,886,178 - 68,890,947 (+)Ensembl
RefSeq Acc Id: XM_022422381   ⟹   XP_022278089
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1868,602,604 - 68,607,364 (+)NCBI
Dog10K_Boxer_Tasha868,121,325 - 68,126,096 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038484214   ⟹   XP_038340142
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1868,548,276 - 68,553,086 (+)NCBI
RefSeq Acc Id: XM_038484215   ⟹   XP_038340143
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1868,548,316 - 68,553,086 (+)NCBI
RefSeq Acc Id: XM_038545729   ⟹   XP_038401657
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0869,011,866 - 69,016,682 (+)NCBI
RefSeq Acc Id: XM_038609821   ⟹   XP_038465749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0868,614,426 - 68,619,237 (+)NCBI
RefSeq Acc Id: XM_038609822   ⟹   XP_038465750
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0868,614,466 - 68,619,237 (+)NCBI
RefSeq Acc Id: XM_038674644   ⟹   XP_038530572
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0868,886,399 - 68,891,210 (+)NCBI
RefSeq Acc Id: XM_038674645   ⟹   XP_038530573
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0868,886,439 - 68,891,210 (+)NCBI
RefSeq Acc Id: XM_850243   ⟹   XP_855336
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1868,602,525 - 68,607,364 (+)NCBI
Dog10K_Boxer_Tasha868,121,285 - 68,126,096 (+)NCBI
Sequence:
RefSeq Acc Id: XP_855336   ⟸   XM_850243
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MI03 (UniProtKB/TrEMBL),   A0A8I3MPQ7 (UniProtKB/TrEMBL),   A0A8C0Q0X3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022278089   ⟸   XM_022422381
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCAFP00000026420   ⟸   ENSCAFT00000028408
RefSeq Acc Id: XP_038340142   ⟸   XM_038484214
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038340143   ⟸   XM_038484215
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038465749   ⟸   XM_038609821
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038465750   ⟸   XM_038609822
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038530572   ⟸   XM_038674644
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MI03 (UniProtKB/TrEMBL),   A0A8I3MPQ7 (UniProtKB/TrEMBL),   A0A8C0Q0X3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038530573   ⟸   XM_038674645
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038401657   ⟸   XM_038545729
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MI03 (UniProtKB/TrEMBL),   A0A8C0Q0X3 (UniProtKB/TrEMBL),   A0A8I3MPQ7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845006091   ⟸   ENSCAFT00845007699

Promoters
RGD ID:13684337
Promoter ID:EPDNEW_C2406
Type:single initiation site
Name:SLC25A47_1
Description:solute carrier family 25 member 47
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1868,602,582 - 68,602,642EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017900 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006375 UniProtKB/TrEMBL
  ENSCAFG00040001211 UniProtKB/TrEMBL
  ENSCAFG00845004279 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000028408.5 UniProtKB/TrEMBL
  ENSCAFT00030011728.1 UniProtKB/TrEMBL
  ENSCAFT00040002260.1 UniProtKB/TrEMBL
  ENSCAFT00845007699 ENTREZGENE
  ENSCAFT00845007699.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_Carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
NCBI Gene SLC25A47 ENTREZGENE
PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 47 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A8C0MI03 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q0X3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MPQ7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:46317 ENTREZGENE