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Gene: SNX1 (sorting nexin 1) Canis lupus familiaris

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Symbol:

SNX1

Name:

sorting nexin 1

RGD ID:

12147474

Description:

ENCODES a protein that exhibits epidermal growth factor receptor binding (inferred); identical protein binding (inferred); insulin receptor binding (inferred); INVOLVED IN endosomal transport (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); neuron projection development (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); nemaline myopathy 6 (ortholog); FOUND IN dendritic spine (ortholog); early endosome (ortholog); extrinsic component of postsynaptic endosome membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sorting nexin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX1 (sorting nexin 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Snx1 (sorting nexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Snx1 (sorting nexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Snx1 (sorting nexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX1 (sorting nexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Snx1 (sorting nexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX1 (sorting nexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNX1 (sorting nexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx1 (sorting nexin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	28,597,928 - 28,642,847 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	28,597,989 - 28,642,535 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	28,517,665 - 28,558,225 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	28,773,892 - 28,815,128 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	28,775,601 - 28,826,476 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	28,708,440 - 28,749,426 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	28,771,001 - 28,811,332 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	29,009,477 - 29,050,708 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

nemaline myopathy 6 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

early endosome to Golgi transport (IBA,IEA)

endosomal transport (ISO)

intracellular protein transport (IEA)

lamellipodium morphogenesis (IEA)

negative regulation of transforming growth factor beta receptor signaling pathway (ISO)

neuron projection development (ISO)

positive regulation of protein catabolic process (ISO)

protein transport (IEA)

receptor internalization (IEA)

retrograde transport, endosome to Golgi (IEA)

Cellular Component

cell projection (IEA)

cytoplasm (IEA)

cytosol (IEA)

dendritic spine (ISO)

early endosome (ISO)

early endosome membrane (IEA)

endosome (IBA,IEA)

endosome membrane (IBA,IEA)

extrinsic component of postsynaptic endosome membrane (ISO)

Golgi apparatus (IEA)

intracellular membrane-bounded organelle (IEA)

lamellipodium (IEA)

lysosome (IEA)

membrane (IEA)

perinuclear region of cytoplasm (ISO)

postsynaptic density (ISO)

postsynaptic density, intracellular component (ISO)

presynapse (ISO)

protein-containing complex (IEA)

retromer complex (IEA)

retromer, tubulation complex (IEA)

vesicle (IEA)

Molecular Function

epidermal growth factor receptor binding (IEA)

identical protein binding (IEA)

insulin receptor binding (IEA)

leptin receptor binding (IEA)

lipid binding (IEA)

phosphatidylinositol binding (IBA,IEA)

protein binding (ISO)

protein heterodimerization activity (IEA)

protein homodimerization activity (IEA)

transferrin receptor binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

retromer-mediated pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SNX1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	28,597,928 - 28,642,847 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	28,597,989 - 28,642,535 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	28,517,665 - 28,558,225 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	28,773,892 - 28,815,128 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	28,775,601 - 28,826,476 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	28,708,440 - 28,749,426 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	28,771,001 - 28,811,332 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	29,009,477 - 29,050,708 (+)	NCBI		UU_Cfam_GSD_1.0

SNX1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	64,095,982 - 64,144,231 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	64,094,123 - 64,146,090 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	64,388,181 - 64,436,430 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	62,175,230 - 62,223,486 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	62,175,253 - 62,217,255	NCBI
Celera	15	41,267,592 - 41,315,422 (+)	NCBI		Celera
Cytogenetic Map	15	q22.31	NCBI
HuRef	15	41,212,728 - 41,260,973 (+)	NCBI		HuRef
CHM1_1	15	64,507,598 - 64,555,963 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	61,903,135 - 61,951,407 (+)	NCBI		T2T-CHM13v2.0

Snx1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	65,995,409 - 66,032,168 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	65,995,415 - 66,033,869 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	66,088,127 - 66,124,886 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	66,088,133 - 66,126,587 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	65,935,934 - 65,972,693 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	65,886,133 - 65,922,892 (-)	NCBI		MGSCv36	mm8
Celera	9	63,323,725 - 63,360,510 (-)	NCBI		Celera
Cytogenetic Map	9	C	NCBI
cM Map	9	35.71	NCBI

Snx1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	75,515,780 - 75,565,487 (-)	NCBI		GRCr8
mRatBN7.2	8	66,630,086 - 66,670,418 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	66,630,086 - 66,670,360 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	72,142,696 - 72,181,352 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	70,415,754 - 70,454,411 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	68,285,570 - 68,324,215 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	71,745,687 - 71,786,182 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	71,745,896 - 71,784,551 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	71,414,974 - 71,455,127 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	70,370,336 - 70,408,991 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	70,389,389 - 70,428,045 (-)	NCBI
Celera	8	66,018,492 - 66,057,139 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

Snx1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	11,266,712 - 11,305,930 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	11,266,712 - 11,306,014 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNX1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	53,351,192 - 53,402,121 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	57,526,468 - 57,576,433 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	43,048,974 - 43,096,544 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	61,340,224 - 61,382,512 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	61,340,352 - 61,382,700 (+)	Ensembl	panpan1.1		panPan2

Snx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	106,721,607 - 106,768,954 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	24,569,609 - 24,619,826 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	24,569,677 - 24,617,016 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	107,903,741 - 107,949,923 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	107,903,954 - 107,949,920 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	118,816,675 - 118,838,161 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNX1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	19,400,298 - 19,446,668 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	19,406,517 - 19,446,700 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	121,947,269 - 121,993,913 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snx1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624781	8,425,971 - 8,468,305 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624781	8,425,878 - 8,467,660 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SNX1
602 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022412858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022412859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022412860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038442584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038442585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038442586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038461060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038461061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038517029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038517030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038517031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038580649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038580650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038580651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038644967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038644968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038644969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_535509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000026989 ⟹ ENSCAFP00000025091

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	30	28,599,654 - 28,638,761 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000081149 ⟹ ENSCAFP00000058727

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	30	28,599,654 - 28,642,535 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000085023 ⟹ ENSCAFP00000057128

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	30	28,599,654 - 28,638,761 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000085484 ⟹ ENSCAFP00000060633

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	30	28,597,989 - 28,638,761 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845039144 ⟹ ENSCAFP00845030655

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	30	28,775,601 - 28,826,476 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845039422 ⟹ ENSCAFP00845030891

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	30	28,775,601 - 28,818,705 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845039622 ⟹ ENSCAFP00845031039

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	30	28,775,601 - 28,815,125 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845039721 ⟹ ENSCAFP00845031113

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	30	28,775,601 - 28,815,125 (+)	Ensembl

RefSeq Acc Id:

XM_038442584 ⟹ XP_038298512

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	30	28,775,568 - 28,815,128 (+)	NCBI

RefSeq Acc Id:

XM_038442585 ⟹ XP_038298513

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	30	28,774,407 - 28,815,128 (+)	NCBI

RefSeq Acc Id:

XM_038442586 ⟹ XP_038298514

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	30	28,773,892 - 28,815,128 (+)	NCBI

RefSeq Acc Id:

XM_038461060 ⟹ XP_038316988

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	30	28,518,171 - 28,558,225 (+)	NCBI

RefSeq Acc Id:

XM_038461061 ⟹ XP_038316989

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	30	28,517,665 - 28,558,225 (+)	NCBI

RefSeq Acc Id:

XM_038517029 ⟹ XP_038372957

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	30	28,710,116 - 28,749,426 (+)	NCBI

RefSeq Acc Id:

XM_038517030 ⟹ XP_038372958

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	30	28,708,955 - 28,749,426 (+)	NCBI

RefSeq Acc Id:

XM_038517031 ⟹ XP_038372959

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	30	28,708,440 - 28,749,426 (+)	NCBI

RefSeq Acc Id:

XM_038580649 ⟹ XP_038436577

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	30	29,011,153 - 29,050,708 (+)	NCBI

RefSeq Acc Id:

XM_038580650 ⟹ XP_038436578

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	30	29,009,992 - 29,050,708 (+)	NCBI

RefSeq Acc Id:

XM_038580651 ⟹ XP_038436579

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	30	29,009,477 - 29,050,708 (+)	NCBI

RefSeq Acc Id:

XM_038644967 ⟹ XP_038500895

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	30	28,772,677 - 28,811,332 (+)	NCBI

RefSeq Acc Id:

XM_038644968 ⟹ XP_038500896

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	30	28,771,516 - 28,811,332 (+)	NCBI

RefSeq Acc Id:

XM_038644969 ⟹ XP_038500897

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	30	28,771,001 - 28,811,332 (+)	NCBI

RefSeq Acc Id:

XM_535509 ⟹ XP_535509

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	30	28,599,610 - 28,638,959 (+)	NCBI
Dog10K_Boxer_Tasha	30	28,519,341 - 28,558,225 (+)	NCBI

Sequence:

show sequence

GCTGTCTGTCTATAAAGTTGTTGTTGCGGCTTCCGCCGCGGGTGGAGGAAGATGGCGTCGGGTG
GTGGTGGCTGTAGCGCTTCGGAGAGGCTCCCTCCGCCTTTCCCCGGCCTGGAGCCGGAGTCCGA
AGGGGCGGCCGGGGGGTCAGAACCCGAGGCGGGGGACAGCGACACCGAGGGGGAGGATATTTTC
ACCGGCGCCGCGGCGGCCAGTAAGCCCCAGTCTCCAAAGAGAATTGCTTCCCTTCCTATCAACA
ATGGCTCCAAAGAAAATGGGATCCACGAGGAACAAGACCAAGAGCCCCAGGATCTCTTTGCAGA
TGCCACAGTGGAGCTCTCTCTGGACAGCTCACAAAATAATCAGAAGAAGGTGCCAGCCAAAACG
CTCATTTCTCTTCCTCCACAGGAAGCCACAAATTCTTCTAAGCCCCAGCCAAGCTATGAAGAGC
TAGAGGAAGAAGAACAGGAAGACCAATTTGATTTGACAGTTGGTATAACTGATCCTGAAAAGAT
AGGAGATGGTATGAATGCTTATGTAGCCTACAAAGTTACAACACAGACGAGCTTACCAATGTTC
AGGAGTAAACAGTTTGCAGTGAAAAGAAGATTTAGTGACTTTCTGGGTCTTTATGAGAAGCTTT
CGGAGAAACATTCTCAGAATGGCTTTATTGTCCCTCCTCCACCTGAGAAAAGCCTAATAGGAAT
GACAAAAGTAAAAGTTGGGAAGGAAGATTCTTCTTCTGCAGAATTTCTTGAAAAACGGAGGGCT
GCTCTAGAAAGGTACCTTCAAAGGATTGTGAATCATCCTACCATGTTACAGGACCCTGATGTCC
GGGAGTTCTTGGAAAAAGAAGAGCTGCCACGCGCCGTTGGTACCCAGACATTGAGTGGCGCTGG
TCTCCTCAAGATGTTCAACAAAGCCACAGATGCAGTCAGTAAAATGACCATCAAGATGAATGAA
TCAGACATTTGGTTTGAGGAGAAGCTCCAGGAAGTAGAGTGTGAAGAGCAGCGCTTACGAAAAC
TGCATGCTGTTGTAGAAACTCTAGTCAACCATAGGAAAGAGCTAGCGCTGAACACAGCCCAGTT
TGCAAAGAGTCTAGCCATGCTTGGGAGCTCTGAGGACAACACAGCATTGTCACGGGCACTCTCC
CAGCTGGCTGAGGTGGAAGAAAAAATTGAGCAGCTCCACCAGGAACAGGCCAACAATGACTTCT
TCCTCCTTGCTGAGCTCCTCAGTGACTACATTCGTCTCCTGGCCATAGTCCGTGCTGCCTTCGA
TCAGCGCATGAAGACATGGCAGCGCTGGCAGGATGCTCAAGCTACACTGCAGAAGAAGCGGGAG
GCTGAGGCTCGGCTGCTTTGGGCCAATAAGCCTGACAAACTGCAGCAGGCCAAGGACGAGATCT
TAGAGTGGGAGTCTCGGGTAACTCAGTATGAAAGGGACTTTGAAAGGATTTCAACTGTGGTCCG
AAAAGAAGTGATACGGTTTGAGAAAGAGAAATCCAAGGACTTCAAAAACCATGTGATCAAGTAC
CTTGAGACACTCCTGTATTCACAGCAGCAGCTGGCAAAGTACTGGGAAGCCTTCCTTCCTGAGG
CAAAGGCCATCTCCTAATGGACCAAGGACACCAGAATCCACCTGCCTGACGCTGCCTTTTTATA
CACTGTCCTCCACCTCTGCTGGACTCCAGTGATGCATCCTGCCTAGCCTGGACTTTACCCCTTC
CTCCCTGCCCCCACGACCCCTGTCCCTATTCTAACCATTACTTCATTTAGCTTCCATATATATT
TTCTTACCTGAGAGAATAGTTTCTTGCTTTAAGCAAAAGACCTACACTAGGTGGTGGAGTTAGG
GGATAGGGGTGGAGTACTGATATAAATATATAAATACAAATGTATATTTTTCAGGATGTGGTTA
GGAACTGGGAATAACGTTTTCTGTTACTCCTGATGGTGCCATGAAAAGATTATGTAATAAAATA
TTTTAAAATCAGGTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038298512	(Get FASTA)	NCBI Sequence Viewer
	XP_038298513	(Get FASTA)	NCBI Sequence Viewer
	XP_038298514	(Get FASTA)	NCBI Sequence Viewer
	XP_038316988	(Get FASTA)	NCBI Sequence Viewer
	XP_038316989	(Get FASTA)	NCBI Sequence Viewer
	XP_038372957	(Get FASTA)	NCBI Sequence Viewer
	XP_038372958	(Get FASTA)	NCBI Sequence Viewer
	XP_038372959	(Get FASTA)	NCBI Sequence Viewer
	XP_038436577	(Get FASTA)	NCBI Sequence Viewer
	XP_038436578	(Get FASTA)	NCBI Sequence Viewer
	XP_038436579	(Get FASTA)	NCBI Sequence Viewer
	XP_038500895	(Get FASTA)	NCBI Sequence Viewer
	XP_038500896	(Get FASTA)	NCBI Sequence Viewer
	XP_038500897	(Get FASTA)	NCBI Sequence Viewer
	XP_535509	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000025091.3
	ENSCAFP00000057128.1
	ENSCAFP00000058727.1
	ENSCAFP00000060633.2
	ENSCAFP00030030587.1
	ENSCAFP00030030616.1
	ENSCAFP00030030660.1
	ENSCAFP00040039368.1
	ENSCAFP00040039419.1
	ENSCAFP00845030655.1
	ENSCAFP00845030891.1
	ENSCAFP00845031039
	ENSCAFP00845031039.1
	ENSCAFP00845031113.1

RefSeq Acc Id:	XP_535509 ⟸ XM_535509
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NWD4 (UniProtKB/TrEMBL), A0A8C0QXW4 (UniProtKB/TrEMBL), A0A8I3PIQ9 (UniProtKB/TrEMBL), A0A8C0TT74 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAAASKPQSPKRIAS LPINNGSKENGIHEEQDQEPQDLFADATVELSLDSSQNNQKKVPAKTLISLPPQEATNSSKPQP SYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFAVKRRFSDFLGL YEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQ DPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQ RLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQA NNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQA KDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEA FLPEAKAIS hide sequence

Ensembl Acc Id:

ENSCAFP00000025091 ⟸ ENSCAFT00000026989

Ensembl Acc Id:

ENSCAFP00000057128 ⟸ ENSCAFT00000085023

Ensembl Acc Id:

ENSCAFP00000060633 ⟸ ENSCAFT00000085484

Ensembl Acc Id:

ENSCAFP00000058727 ⟸ ENSCAFT00000081149

RefSeq Acc Id:	XP_038372959 ⟸ XM_038517031
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038372958 ⟸ XM_038517030
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038372957 ⟸ XM_038517029
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038500897 ⟸ XM_038644969
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038500896 ⟸ XM_038644968
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038500895 ⟸ XM_038644967
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038298514 ⟸ XM_038442586
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0TT74 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038298513 ⟸ XM_038442585
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0TT74 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038298512 ⟸ XM_038442584
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NWD4 (UniProtKB/TrEMBL), A0A8C0QXW4 (UniProtKB/TrEMBL), A0A8I3PIQ9 (UniProtKB/TrEMBL), A0A8C0TT74 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038316989 ⟸ XM_038461061
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0TT74 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038316988 ⟸ XM_038461060
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0TT74 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038436579 ⟸ XM_038580651
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0TT74 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038436578 ⟸ XM_038580650
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0TT74 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038436577 ⟸ XM_038580649
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NWD4 (UniProtKB/TrEMBL), A0A8C0QXW4 (UniProtKB/TrEMBL), A0A8C0TT74 (UniProtKB/TrEMBL), A0A8I3PIQ9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845030655 ⟸ ENSCAFT00845039144

Ensembl Acc Id:

ENSCAFP00845030891 ⟸ ENSCAFT00845039422

Ensembl Acc Id:

ENSCAFP00845031113 ⟸ ENSCAFT00845039721

Ensembl Acc Id:

ENSCAFP00845031039 ⟸ ENSCAFT00845039622

Protein Domains

PX Sorting nexin N-terminal

Promoters

RGD ID:

13688551

Promoter ID:

EPDNEW_C6619

Type:

multiple initiation site

Name:

SNX1_1

Description:

sorting nexin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	30	28,599,647 - 28,599,707	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000017041	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030018813	UniProtKB/TrEMBL
	ENSCAFG00040024161	UniProtKB/TrEMBL
	ENSCAFG00845022186	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000026989.5	UniProtKB/TrEMBL
	ENSCAFT00000081149.2	UniProtKB/TrEMBL
	ENSCAFT00000085023.2	UniProtKB/TrEMBL
	ENSCAFT00000085484.2	UniProtKB/TrEMBL
	ENSCAFT00030035081.1	UniProtKB/TrEMBL
	ENSCAFT00030035113.1	UniProtKB/TrEMBL
	ENSCAFT00030035163.1	UniProtKB/TrEMBL
	ENSCAFT00040045049.1	UniProtKB/TrEMBL
	ENSCAFT00040045107.1	UniProtKB/TrEMBL
	ENSCAFT00845039144.1	UniProtKB/TrEMBL
	ENSCAFT00845039422.1	UniProtKB/TrEMBL
	ENSCAFT00845039622	ENTREZGENE
	ENSCAFT00845039622.1	UniProtKB/TrEMBL
	ENSCAFT00845039721.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1270.60	UniProtKB/TrEMBL
	3.30.1520.10	UniProtKB/TrEMBL
InterPro	AH/BAR_dom_sf	UniProtKB/TrEMBL
	PX_dom	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	PX_SNX1	UniProtKB/TrEMBL
	SNX1	UniProtKB/TrEMBL
	Sorting_nexin_N	UniProtKB/TrEMBL
	Vps5_C	UniProtKB/TrEMBL
NCBI Gene	SNX1	ENTREZGENE
PANTHER	PTHR10555:SF129	UniProtKB/TrEMBL
	SORTING NEXIN	UniProtKB/TrEMBL
Pfam	PF00787	UniProtKB/TrEMBL
	Sorting_nexin	UniProtKB/TrEMBL
	Vps5	UniProtKB/TrEMBL
PROSITE	PS50195	UniProtKB/TrEMBL
SMART	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103657	UniProtKB/TrEMBL
	SSF64268	UniProtKB/TrEMBL
UniProt	A0A8C0NWD4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QXW4	ENTREZGENE
	A0A8C0RNK6_CANLF	UniProtKB/TrEMBL
	A0A8C0TT74	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0TTE8_CANLF	UniProtKB/TrEMBL
	A0A8I3PAW7_CANLF	UniProtKB/TrEMBL
	A0A8I3PGD3_CANLF	UniProtKB/TrEMBL
	A0A8I3PIQ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PND2_CANLF	UniProtKB/TrEMBL
	A0A8P0P7U5_CANLF	UniProtKB/TrEMBL
	A0A8P0TCG2_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:46619	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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