MIR302D (microRNA mir-302d) - Rat Genome Database

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Gene: MIR302D (microRNA mir-302d) Canis lupus familiaris
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Symbol: MIR302D (Ensembl: cfa-mir-302d)
Name: microRNA mir-302d (Ensembl:cfa-mir-302d)
RGD ID: 12146741
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-302d; microRNA 302d
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13232,429,032 - 32,429,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3232,429,032 - 32,429,101 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha329,602,648 - 9,602,717 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03232,654,837 - 32,654,906 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3232,654,837 - 32,654,906 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13232,637,517 - 32,637,586 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03232,399,449 - 32,399,518 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0327,461,091 - 7,461,160 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
RISC complex  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:16381832   PMID:18215311  


Genomics

Comparative Map Data
MIR302D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13232,429,032 - 32,429,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3232,429,032 - 32,429,101 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha329,602,648 - 9,602,717 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03232,654,837 - 32,654,906 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3232,654,837 - 32,654,906 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13232,637,517 - 32,637,586 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03232,399,449 - 32,399,518 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0327,461,091 - 7,461,160 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
MIR302D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384112,648,004 - 112,648,071 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4112,648,004 - 112,648,071 (-)Ensemblhg38GRCh38
GRCh374113,569,160 - 113,569,227 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364113,788,608 - 113,788,675 (-)NCBIBuild 36Build 36hg18NCBI36
Celera4110,863,253 - 110,863,320 (-)NCBICelera
Cytogenetic Map4q25NCBI
HuRef4109,297,580 - 109,297,647 (-)NCBIHuRef
CHM1_14113,545,652 - 113,545,719 (-)NCBICHM1_1
T2T-CHM13v2.04115,956,344 - 115,956,411 (-)NCBIT2T-CHM13v2.0
Mir302d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393127,339,273 - 127,339,338 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3127,339,273 - 127,339,338 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm383127,545,624 - 127,545,689 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3127,545,624 - 127,545,689 (+)Ensemblmm10GRCm38
MGSCv373127,248,542 - 127,248,607 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
Celera3134,035,176 - 134,035,241 (+)NCBICelera
Cytogenetic Map3G2NCBI
cM Map356.54NCBI


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
ectoderm
endocrine system
endoderm
mesenchyme
nervous system
reproductive system
respiratory system
1 1 7 7 1 1 7 8 1

Sequence


Ensembl Acc Id: ENSCAFT00000039964
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3232,429,032 - 32,429,101 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845030640
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3232,654,837 - 32,654,906 (-)Ensembl
RefSeq Acc Id: NR_049446
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13232,429,032 - 32,429,101 (-)NCBI
Dog10K_Boxer_Tasha329,602,648 - 9,602,717 (+)NCBI
ROS_Cfam_1.03232,654,837 - 32,654,906 (-)NCBI
UMICH_Zoey_3.13232,637,517 - 32,637,586 (-)NCBI
UNSW_CanFamBas_1.03232,399,449 - 32,399,518 (-)NCBI
UU_Cfam_GSD_1.0327,461,091 - 7,461,160 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000025681 Ensembl
  ENSCAFG00845017309 Ensembl, ENTREZGENE
Ensembl Transcript ENSCAFT00845030640 ENTREZGENE
miRBase MI0010353 ENTREZGENE
NCBI Gene MIR302D ENTREZGENE
RNAcentral URS000075A32E RNACentral
  URS00007E3C5C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR302D  microRNA mir-302d    microRNA 302d  Symbol and/or name change 5135510 APPROVED