ATP6V0A2 (ATPase H+ transporting V0 subunit a2) - Rat Genome Database

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Gene: ATP6V0A2 (ATPase H+ transporting V0 subunit a2) Canis lupus familiaris
Analyze
Symbol: ATP6V0A2
Name: ATPase H+ transporting V0 subunit a2
RGD ID: 12082743
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN cell projection organization (inferred); cellular response to increased oxygen levels (inferred); intracellular iron ion homeostasis (inferred); ASSOCIATED WITH Autosomal Recessive Cutis Laxa (ortholog); autosomal recessive cutis laxa type IIA (ortholog); congenital disorder of glycosylation Il (ortholog); FOUND IN acrosomal vesicle (inferred); focal adhesion (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase 116 kDa subunit a; V-type proton ATPase 116 kDa subunit a isoform 2; V-type proton ATPase 116 kDa subunit a2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,911,319 - 5,952,773 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,912,887 - 5,952,306 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,074,169 - 6,115,619 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,161,361 - 6,202,794 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,162,010 - 6,229,946 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,094,884 - 6,136,318 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,187,243 - 6,228,453 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,140,432 - 6,181,874 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V0A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,911,319 - 5,952,773 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,912,887 - 5,952,306 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,074,169 - 6,115,619 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,161,361 - 6,202,794 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,162,010 - 6,229,946 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,094,884 - 6,136,318 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,187,243 - 6,228,453 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,140,432 - 6,181,874 (-)NCBIUU_Cfam_GSD_1.0
ATP6V0A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812123,712,353 - 123,761,755 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12123,712,353 - 123,761,755 (+)EnsemblGRCh38hg38GRCh38
GRCh3712124,196,900 - 124,246,302 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,762,818 - 122,810,394 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412122,721,744 - 122,769,321NCBI
Celera12123,793,121 - 123,842,693 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12121,158,054 - 121,207,491 (+)NCBIHuRef
CHM1_112124,017,815 - 124,067,195 (+)NCBICHM1_1
T2T-CHM13v2.012123,711,219 - 123,760,679 (+)NCBIT2T-CHM13v2.0
Atp6v0a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,767,117 - 124,801,519 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,766,641 - 124,801,519 (+)EnsemblGRCm39 Ensembl
GRCm385124,629,052 - 124,724,455 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,628,576 - 124,724,455 (+)EnsemblGRCm38mm10GRCm38
MGSCv375125,079,648 - 125,097,437 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv375125,192,573 - 125,202,524 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365125,001,189 - 125,011,627 (+)NCBIMGSCv36mm8
Celera5121,704,480 - 121,735,509 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.7NCBI
Atp6v0a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,608,211 - 37,640,860 (-)NCBIGRCr8
mRatBN7.21231,947,220 - 31,979,875 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,822,733 - 32,007,069 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,129,001 - 33,158,515 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,740,320 - 33,769,838 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,792,188 - 32,821,709 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,368,321 - 37,398,233 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,363,906 - 37,425,596 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,238,423 - 39,269,298 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,061,611 - 33,092,421 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,941,066 - 32,949,116 (-)NCBI
Celera1233,639,711 - 33,670,024 (-)NCBICelera
Cytogenetic Map12q15NCBI
Atp6v0a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,311,434 - 5,337,697 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,311,434 - 5,337,684 (-)NCBIChiLan1.0ChiLan1.0
ATP6V0A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,787,497 - 131,834,937 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,783,904 - 131,831,213 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012121,297,959 - 121,343,294 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112125,522,886 - 125,569,858 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12125,522,886 - 125,569,858 (+)Ensemblpanpan1.1panPan2
Atp6v0a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,344,853 - 158,374,799 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,103,135 - 1,134,573 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,104,627 - 1,138,487 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,250,405 - 29,297,683 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,250,400 - 29,297,697 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21430,944,213 - 30,989,982 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111119,042,465 - 119,095,380 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11119,042,525 - 119,097,450 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037126,179,187 - 126,233,498 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,471,403 - 23,504,576 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,471,697 - 23,501,018 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP6V0A2
370 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000011722   ⟹   ENSCAFP00000010863
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl265,912,887 - 5,952,306 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000059822   ⟹   ENSCAFP00000057702
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl265,929,838 - 5,952,306 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845029893   ⟹   ENSCAFP00845023474
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl266,162,010 - 6,202,347 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845029951   ⟹   ENSCAFP00845023511
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl266,179,888 - 6,202,347 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845029977   ⟹   ENSCAFP00845023525
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl266,194,479 - 6,229,946 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845030032   ⟹   ENSCAFP00845023561
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl266,204,338 - 6,229,946 (-)Ensembl
RefSeq Acc Id: XM_022410740   ⟹   XP_022266448
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1265,911,319 - 5,952,773 (-)NCBI
Dog10K_Boxer_Tasha266,074,169 - 6,115,619 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038436406   ⟹   XP_038292334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0266,161,361 - 6,202,347 (-)NCBI
RefSeq Acc Id: XM_038436407   ⟹   XP_038292335
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0266,161,361 - 6,202,794 (-)NCBI
RefSeq Acc Id: XM_038511324   ⟹   XP_038367252
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1266,094,884 - 6,135,871 (-)NCBI
RefSeq Acc Id: XM_038511325   ⟹   XP_038367253
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1266,094,884 - 6,136,318 (-)NCBI
RefSeq Acc Id: XM_038574805   ⟹   XP_038430733
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0266,140,432 - 6,181,427 (-)NCBI
RefSeq Acc Id: XM_038574806   ⟹   XP_038430734
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0266,140,432 - 6,181,874 (-)NCBI
RefSeq Acc Id: XM_038638994   ⟹   XP_038494922
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0266,187,243 - 6,228,006 (-)NCBI
RefSeq Acc Id: XM_038638995   ⟹   XP_038494923
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0266,187,243 - 6,228,453 (-)NCBI
RefSeq Acc Id: XM_543370   ⟹   XP_543370
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1265,911,319 - 5,952,352 (-)NCBI
Dog10K_Boxer_Tasha266,074,169 - 6,115,172 (-)NCBI
Sequence:
RefSeq Acc Id: XP_543370   ⟸   XM_543370
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TK26 (UniProtKB/TrEMBL),   A0A8I3P989 (UniProtKB/TrEMBL),   A0A8C0KPN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022266448   ⟸   XM_022410740
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KPN2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000057702   ⟸   ENSCAFT00000059822
Ensembl Acc Id: ENSCAFP00000010863   ⟸   ENSCAFT00000011722
RefSeq Acc Id: XP_038367253   ⟸   XM_038511325
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038367252   ⟸   XM_038511324
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038494923   ⟸   XM_038638995
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038494922   ⟸   XM_038638994
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038292335   ⟸   XM_038436407
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KPN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038292334   ⟸   XM_038436406
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TK26 (UniProtKB/TrEMBL),   A0A8I3P989 (UniProtKB/TrEMBL),   A0A8C0KPN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430734   ⟸   XM_038574806
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KPN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430733   ⟸   XM_038574805
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KPN2 (UniProtKB/TrEMBL),   A0A8C0TK26 (UniProtKB/TrEMBL),   A0A8I3P989 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845023561   ⟸   ENSCAFT00845030032
Ensembl Acc Id: ENSCAFP00845023511   ⟸   ENSCAFT00845029951
Ensembl Acc Id: ENSCAFP00845023474   ⟸   ENSCAFT00845029893
Ensembl Acc Id: ENSCAFP00845023525   ⟸   ENSCAFT00845029977
Protein Domains
Tectonic


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007234 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030026084 UniProtKB/TrEMBL
  ENSCAFG00040023315 UniProtKB/TrEMBL
  ENSCAFG00845016867 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000011677.5 UniProtKB/TrEMBL
  ENSCAFT00000011722.4 UniProtKB/TrEMBL
  ENSCAFT00000059822.2 UniProtKB/TrEMBL
  ENSCAFT00030048245.1 UniProtKB/TrEMBL
  ENSCAFT00040043339.1 UniProtKB/TrEMBL
  ENSCAFT00845029893 ENTREZGENE
  ENSCAFT00845029893.1 UniProtKB/TrEMBL
  ENSCAFT00845029951.1 UniProtKB/TrEMBL
  ENSCAFT00845029977.1 UniProtKB/TrEMBL
InterPro Tectonic UniProtKB/TrEMBL
  Tectonic_dom UniProtKB/TrEMBL
  V-ATPase_116kDa_su UniProtKB/TrEMBL
  V-type_ATPase_116kDa_su_euka UniProtKB/TrEMBL
NCBI Gene ATP6V0A2 ENTREZGENE
PANTHER PTHR11629 UniProtKB/TrEMBL
  PTHR14611 UniProtKB/TrEMBL
  TECTONIC-2 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE 116 KDA SUBUNIT A2 UniProtKB/TrEMBL
Pfam DUF1619 UniProtKB/TrEMBL
  V_ATPase_I UniProtKB/TrEMBL
PIRSF ATP6V0A1 UniProtKB/TrEMBL
UniProt A0A8C0KPN2 ENTREZGENE
  A0A8C0TK26 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P189_CANLF UniProtKB/TrEMBL
  A0A8I3P989 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RZJ8_CANLF UniProtKB/TrEMBL
  A0A8P0SCI3_CANLF UniProtKB/TrEMBL
  A0A8P0T9U7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38269 ENTREZGENE