ATP6V1G3 (ATPase H+ transporting V1 subunit G3) - Rat Genome Database

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Gene: ATP6V1G3 (ATPase H+ transporting V1 subunit G3) Canis lupus familiaris
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Symbol: ATP6V1G3
Name: ATPase H+ transporting V1 subunit G3
RGD ID: 12073595
Description: ENCODES a protein that exhibits ATPase binding (inferred); proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN proton transmembrane transport (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (inferred); plasma membrane (inferred); vacuolar proton-transporting V-type ATPase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit G 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.174,368,476 - 4,388,544 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl74,368,418 - 4,388,539 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha74,053,554 - 4,073,662 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.074,054,400 - 4,074,512 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl74,054,387 - 4,074,504 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.174,001,449 - 4,021,551 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.074,102,151 - 4,122,266 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.074,134,335 - 4,154,453 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V1G3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.174,368,476 - 4,388,544 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl74,368,418 - 4,388,539 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha74,053,554 - 4,073,662 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.074,054,400 - 4,074,512 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl74,054,387 - 4,074,504 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.174,001,449 - 4,021,551 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.074,102,151 - 4,122,266 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.074,134,335 - 4,154,453 (+)NCBIUU_Cfam_GSD_1.0
ATP6V1G3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381198,523,222 - 198,540,945 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1198,523,222 - 198,540,945 (-)EnsemblGRCh38hg38GRCh38
GRCh371198,492,352 - 198,510,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361196,758,975 - 196,776,698 (-)NCBINCBI36Build 36hg18NCBI36
Build 341195,224,010 - 195,241,732NCBI
Celera1171,614,921 - 171,632,643 (-)NCBICelera
Cytogenetic Map1q31.3NCBI
HuRef1169,659,548 - 169,677,275 (-)NCBIHuRef
CHM1_11199,914,674 - 199,932,396 (-)NCBICHM1_1
T2T-CHM13v2.01197,783,117 - 197,800,839 (-)NCBIT2T-CHM13v2.0
Atp6v1g3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391138,201,476 - 138,217,200 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1138,201,476 - 138,217,200 (+)EnsemblGRCm39 Ensembl
GRCm381138,273,738 - 138,289,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1138,273,738 - 138,289,462 (+)EnsemblGRCm38mm10GRCm38
MGSCv371140,170,315 - 140,186,039 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361140,090,149 - 140,105,873 (+)NCBIMGSCv36mm8
Celera1140,915,081 - 140,930,807 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map160.82NCBI
Atp6v1g3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81352,351,787 - 52,376,784 (+)NCBIGRCr8
mRatBN7.21349,800,256 - 49,825,247 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1349,794,222 - 49,825,247 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1352,418,239 - 52,432,667 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01353,706,130 - 53,720,558 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01350,973,369 - 50,987,782 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01355,265,794 - 55,288,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1355,274,199 - 55,288,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01360,297,386 - 60,321,789 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41351,462,070 - 51,476,522 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11351,438,095 - 51,489,937 (+)NCBI
Celera1350,095,450 - 50,109,898 (+)NCBICelera
Cytogenetic Map13q13NCBI
Atp6v1g3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540634,910,498 - 34,927,745 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540634,910,498 - 34,927,745 (-)NCBIChiLan1.0ChiLan1.0
ATP6V1G3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2150,834,517 - 50,852,067 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1150,793,764 - 50,811,547 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01174,130,976 - 174,148,524 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11178,440,516 - 178,458,092 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1178,440,516 - 178,458,108 (-)Ensemblpanpan1.1panPan2
Atp6v1g3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934476,227,144 - 76,242,234 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365675,461,760 - 5,476,879 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365675,461,760 - 5,476,893 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1G3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1021,371,257 - 21,410,296 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11021,371,302 - 21,394,817 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21026,048,320 - 26,071,801 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1G3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12530,867,341 - 30,886,380 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2530,868,161 - 30,886,540 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605531,756,940 - 31,775,447 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v1g3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247981,891,613 - 1,910,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247981,893,699 - 1,910,104 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP6V1G3
230 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
1 1 1 7 6 6 2 6 2 11 8 7 6 4

Sequence


Ensembl Acc Id: ENSCAFT00000018001   ⟹   ENSCAFP00000016671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl74,368,418 - 4,388,539 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845043212   ⟹   ENSCAFP00845033877
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl74,054,387 - 4,074,504 (+)Ensembl
RefSeq Acc Id: XM_038482596   ⟹   XP_038338524
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.174,001,449 - 4,021,551 (+)NCBI
RefSeq Acc Id: XM_038541753   ⟹   XP_038397681
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.074,134,335 - 4,154,453 (+)NCBI
RefSeq Acc Id: XM_038605874   ⟹   XP_038461802
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.074,102,151 - 4,122,266 (+)NCBI
RefSeq Acc Id: XM_038670593   ⟹   XP_038526521
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.074,054,400 - 4,074,512 (+)NCBI
RefSeq Acc Id: XM_547375   ⟹   XP_547375
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.174,368,476 - 4,388,544 (+)NCBI
Dog10K_Boxer_Tasha74,053,554 - 4,073,662 (+)NCBI
Sequence:
RefSeq Acc Id: XP_547375   ⟸   XM_547375
- UniProtKB: A0A8C0KDL5 (UniProtKB/TrEMBL),   A0A8C0PCR3 (UniProtKB/TrEMBL),   A0A8I3PWA9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000016671   ⟸   ENSCAFT00000018001
RefSeq Acc Id: XP_038338524   ⟸   XM_038482596
RefSeq Acc Id: XP_038461802   ⟸   XM_038605874
RefSeq Acc Id: XP_038526521   ⟸   XM_038670593
- UniProtKB: A0A8C0KDL5 (UniProtKB/TrEMBL),   A0A8C0PCR3 (UniProtKB/TrEMBL),   A0A8I3PWA9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397681   ⟸   XM_038541753
- UniProtKB: A0A8C0KDL5 (UniProtKB/TrEMBL),   A0A8C0PCR3 (UniProtKB/TrEMBL),   A0A8I3PWA9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845033877   ⟸   ENSCAFT00845043212

Promoters
RGD ID:13683878
Promoter ID:EPDNEW_C1946
Type:single initiation site
Name:ATP6V1G3_1
Description:ATPase H+ transporting V1 subunit G3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.174,368,554 - 4,368,614EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011322 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030023506 UniProtKB/TrEMBL
  ENSCAFG00040011990 UniProtKB/TrEMBL
  ENSCAFG00845024470 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000018001.5 UniProtKB/TrEMBL
  ENSCAFT00030043195.1 UniProtKB/TrEMBL
  ENSCAFT00040022108.1 UniProtKB/TrEMBL
  ENSCAFT00845043212 ENTREZGENE
  ENSCAFT00845043212.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.2950 UniProtKB/TrEMBL
InterPro V-ATPase_G UniProtKB/TrEMBL
KEGG Report cfa:490256 UniProtKB/TrEMBL
NCBI Gene ATP6V1G3 ENTREZGENE
PANTHER PTHR12713 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT G 3 UniProtKB/TrEMBL
Pfam V-ATPase_G UniProtKB/TrEMBL
UniProt A0A8C0KDL5 ENTREZGENE
  A0A8C0PCR3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PWA9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38283 ENTREZGENE