ZBTB11 (zinc finger and BTB domain containing 11) - Rat Genome Database

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Gene: ZBTB11 (zinc finger and BTB domain containing 11) Canis lupus familiaris
Analyze
Symbol: ZBTB11
Name: zinc finger and BTB domain containing 11
RGD ID: 12070501
Description: ENCODES a protein that exhibits zinc ion binding (inferred); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 69 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain-containing protein 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1337,983,192 - 8,015,590 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl337,984,851 - 8,015,391 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha338,137,596 - 8,170,017 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0338,122,276 - 8,154,715 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl338,122,282 - 8,154,475 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1338,009,888 - 8,042,271 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0338,056,457 - 8,088,671 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0338,396,585 - 8,429,023 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IBA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZBTB11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1337,983,192 - 8,015,590 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl337,984,851 - 8,015,391 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha338,137,596 - 8,170,017 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0338,122,276 - 8,154,715 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl338,122,282 - 8,154,475 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1338,009,888 - 8,042,271 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0338,056,457 - 8,088,671 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0338,396,585 - 8,429,023 (-)NCBIUU_Cfam_GSD_1.0
ZBTB11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383101,648,889 - 101,677,132 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3101,648,889 - 101,677,135 (-)EnsemblGRCh38hg38GRCh38
GRCh373101,367,733 - 101,395,976 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363102,850,978 - 102,878,607 (-)NCBINCBI36Build 36hg18NCBI36
Build 343102,850,980 - 102,878,607NCBI
Celera399,761,387 - 99,789,095 (-)NCBICelera
Cytogenetic Map3q12.3NCBI
HuRef398,737,439 - 98,765,148 (-)NCBIHuRef
CHM1_13101,331,586 - 101,359,291 (-)NCBICHM1_1
T2T-CHM13v2.03104,361,496 - 104,389,742 (-)NCBIT2T-CHM13v2.0
Zbtb11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391655,791,820 - 55,829,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1655,794,246 - 55,829,276 (+)EnsemblGRCm39 Ensembl
GRCm381655,971,437 - 56,008,913 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1655,973,883 - 56,008,913 (+)EnsemblGRCm38mm10GRCm38
MGSCv371655,973,917 - 56,009,026 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361655,973,929 - 56,009,026 (+)NCBIMGSCv36mm8
Celera1656,288,877 - 56,323,900 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1633.74NCBI
Zbtb11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81158,061,355 - 58,121,768 (-)NCBIGRCr8
mRatBN7.21144,598,694 - 44,652,559 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1144,616,289 - 44,651,050 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1153,392,673 - 53,427,452 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01146,054,291 - 46,089,070 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01145,178,460 - 45,213,241 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01147,079,201 - 47,113,993 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1147,079,234 - 47,113,993 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01150,261,091 - 50,295,883 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41145,591,191 - 45,625,950 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11145,650,340 - 45,683,540 (-)NCBI
Celera1144,366,794 - 44,401,849 (-)NCBICelera
Cytogenetic Map11q12NCBI
Zbtb11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554273,173,109 - 3,198,437 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554273,173,109 - 3,198,437 (-)NCBIChiLan1.0ChiLan1.0
ZBTB11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2299,586,155 - 99,617,632 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1399,590,937 - 99,622,410 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0398,738,205 - 98,765,901 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13105,417,699 - 105,447,727 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3105,417,699 - 105,446,959 (-)Ensemblpanpan1.1panPan2
Zbtb11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602148,862,980 - 148,890,732 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366301,759,902 - 1,788,765 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366301,760,015 - 1,788,629 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13157,422,007 - 157,460,212 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113157,422,024 - 157,460,216 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213166,902,762 - 166,940,729 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12279,212,022 - 79,242,131 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2279,212,476 - 79,242,476 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604187,314,931 - 87,346,295 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478915,456,346 - 15,486,320 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478915,456,868 - 15,483,379 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZBTB11
338 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000015241   ⟹   ENSCAFP00000014103
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl337,984,851 - 8,015,391 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000044252   ⟹   ENSCAFP00000040542
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl337,984,851 - 8,015,391 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845037660   ⟹   ENSCAFP00845029508
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl338,122,282 - 8,154,475 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845037767   ⟹   ENSCAFP00845029594
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl338,122,282 - 8,154,475 (-)Ensembl
RefSeq Acc Id: XM_005639428   ⟹   XP_005639485
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1337,983,192 - 8,014,641 (-)NCBI
Dog10K_Boxer_Tasha338,137,596 - 8,169,025 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038444815   ⟹   XP_038300743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0338,122,276 - 8,154,715 (-)NCBI
RefSeq Acc Id: XM_038444816   ⟹   XP_038300744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0338,122,276 - 8,153,723 (-)NCBI
RefSeq Acc Id: XM_038519102   ⟹   XP_038375030
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1338,009,888 - 8,042,271 (-)NCBI
RefSeq Acc Id: XM_038519103   ⟹   XP_038375031
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1338,009,888 - 8,041,285 (-)NCBI
RefSeq Acc Id: XM_038582680   ⟹   XP_038438608
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0338,396,585 - 8,429,023 (-)NCBI
RefSeq Acc Id: XM_038582681   ⟹   XP_038438609
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0338,396,585 - 8,428,020 (-)NCBI
RefSeq Acc Id: XM_038647096   ⟹   XP_038503024
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0338,056,457 - 8,088,671 (-)NCBI
RefSeq Acc Id: XM_038647097   ⟹   XP_038503025
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0338,056,457 - 8,087,689 (-)NCBI
RefSeq Acc Id: XM_545078   ⟹   XP_545078
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1337,983,192 - 8,015,590 (-)NCBI
Dog10K_Boxer_Tasha338,137,596 - 8,170,017 (-)NCBI
Sequence:
RefSeq Acc Id: XP_545078   ⟸   XM_545078
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TSV9 (UniProtKB/TrEMBL),   A0A8C0K6W1 (UniProtKB/TrEMBL),   A0A8I3P7S4 (UniProtKB/TrEMBL),   A0A8C0TSV3 (UniProtKB/TrEMBL),   A0A8I3PGR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005639485   ⟸   XM_005639428
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TSV3 (UniProtKB/TrEMBL),   A0A8I3PGR1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000014103   ⟸   ENSCAFT00000015241
Ensembl Acc Id: ENSCAFP00000040542   ⟸   ENSCAFT00000044252
RefSeq Acc Id: XP_038375030   ⟸   XM_038519102
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038375031   ⟸   XM_038519103
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038503024   ⟸   XM_038647096
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038503025   ⟸   XM_038647097
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038300743   ⟸   XM_038444815
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TSV9 (UniProtKB/TrEMBL),   A0A8C0K6W1 (UniProtKB/TrEMBL),   A0A8I3P7S4 (UniProtKB/TrEMBL),   A0A8C0TSV3 (UniProtKB/TrEMBL),   A0A8I3PGR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300744   ⟸   XM_038444816
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TSV3 (UniProtKB/TrEMBL),   A0A8I3PGR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438608   ⟸   XM_038582680
- Peptide Label: isoform X1
- UniProtKB: A0A8C0K6W1 (UniProtKB/TrEMBL),   A0A8C0TSV3 (UniProtKB/TrEMBL),   A0A8C0TSV9 (UniProtKB/TrEMBL),   A0A8I3P7S4 (UniProtKB/TrEMBL),   A0A8I3PGR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438609   ⟸   XM_038582681
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TSV3 (UniProtKB/TrEMBL),   A0A8I3PGR1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845029508   ⟸   ENSCAFT00845037660
Ensembl Acc Id: ENSCAFP00845029594   ⟸   ENSCAFT00845037767
Protein Domains
BTB   C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009599 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016952 UniProtKB/TrEMBL
  ENSCAFG00040024482 UniProtKB/TrEMBL
  ENSCAFG00845021345 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000015241.2 UniProtKB/TrEMBL
  ENSCAFT00000044252.4 UniProtKB/TrEMBL
  ENSCAFT00030031389.1 UniProtKB/TrEMBL
  ENSCAFT00030031458.1 UniProtKB/TrEMBL
  ENSCAFT00040045636.1 UniProtKB/TrEMBL
  ENSCAFT00040045660.1 UniProtKB/TrEMBL
  ENSCAFT00845037660 ENTREZGENE
  ENSCAFT00845037660.1 UniProtKB/TrEMBL
  ENSCAFT00845037767.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.340.70 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  Integrase_H2C2 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  ZBTB11_BTB_POZ UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZBTB11 ENTREZGENE
PANTHER ZINC FINGER AND BTB DOMAIN CONTAINING 11 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  Integrase_H2C2 UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8C0K6W1 ENTREZGENE
  A0A8C0TSV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TSV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P7S4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PGR1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:48521 ENTREZGENE