ATP6V1E1 (ATPase H+ transporting V1 subunit E1) - Rat Genome Database

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Gene: ATP6V1E1 (ATPase H+ transporting V1 subunit E1) Canis lupus familiaris
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Symbol: ATP6V1E1
Name: ATPase H+ transporting V1 subunit E1
RGD ID: 12062493
Description: ENCODES a protein that exhibits ATPase binding (ortholog); INVOLVED IN proton transmembrane transport (ortholog); ASSOCIATED WITH autosomal recessive cutis laxa type IIC (ortholog); cutis laxa (ortholog); immunodeficiency 51 (ortholog); FOUND IN extrinsic component of synaptic vesicle membrane (ortholog); vacuolar proton-transporting V-type ATPase, V1 domain (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit E 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12745,222,647 - 45,249,317 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha271,434,437 - 1,460,750 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02745,592,265 - 45,618,871 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2745,592,270 - 45,626,233 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12745,520,711 - 45,547,059 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02745,493,999 - 45,520,299 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.027788,311 - 814,762 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V1E1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12745,222,647 - 45,249,317 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha271,434,437 - 1,460,750 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02745,592,265 - 45,618,871 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2745,592,270 - 45,626,233 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12745,520,711 - 45,547,059 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02745,493,999 - 45,520,299 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.027788,311 - 814,762 (+)NCBIUU_Cfam_GSD_1.0
ATP6V1E1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382217,592,136 - 17,628,822 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2217,592,136 - 17,628,749 (-)EnsemblGRCh38hg38GRCh38
GRCh372218,074,902 - 18,111,588 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362216,454,902 - 16,491,588 (-)NCBINCBI36Build 36hg18NCBI36
Build 342216,449,478 - 16,486,089NCBI
Celera221,694,652 - 1,731,337 (-)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef221,890,227 - 1,926,475 (-)NCBIHuRef
CHM1_12218,074,451 - 18,110,848 (-)NCBICHM1_1
T2T-CHM13v2.02218,259,880 - 18,296,566 (-)NCBIT2T-CHM13v2.0
Atp6v1e1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396120,772,205 - 120,799,659 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6120,771,266 - 120,799,754 (-)EnsemblGRCm39 Ensembl
GRCm386120,795,244 - 120,822,698 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6120,794,305 - 120,822,793 (-)EnsemblGRCm38mm10GRCm38
MGSCv376120,745,262 - 120,772,703 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366120,760,863 - 120,788,304 (-)NCBIMGSCv36mm8
Celera6122,637,400 - 122,665,943 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.01NCBI
Atp6v1e1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84155,694,534 - 155,716,660 (-)NCBIGRCr8
mRatBN7.24154,022,358 - 154,044,486 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4154,022,358 - 154,044,584 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4160,287,788 - 160,309,985 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04156,071,525 - 156,093,723 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04154,694,845 - 154,717,044 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04153,351,434 - 153,373,558 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4153,351,421 - 153,373,649 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04220,441,646 - 220,463,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44157,203,842 - 157,225,966 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14157,448,682 - 157,470,807 (-)NCBI
Celera4142,863,533 - 142,885,658 (-)NCBICelera
Cytogenetic Map4q42NCBI
Atp6v1e1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554545,666,921 - 5,688,645 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554545,669,883 - 5,688,623 (-)NCBIChiLan1.0ChiLan1.0
ATP6V1E1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22327,910,429 - 27,946,816 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12230,457,953 - 30,494,431 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0221,023,028 - 1,059,416 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12216,452,358 - 16,486,902 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2216,452,358 - 16,486,902 (-)Ensemblpanpan1.1panPan2
Atp6v1e1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945110,349,716 - 110,375,182 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936807570,872 - 596,444 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936807570,952 - 596,383 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1E1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl569,747,700 - 69,771,990 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1569,752,644 - 69,772,038 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2572,025,380 - 72,045,336 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Atp6v1e1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247359,703,863 - 9,726,275 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247359,704,600 - 9,726,297 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP6V1E1
297 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00845054546   ⟹   ENSCAFP00845042879
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2745,592,270 - 45,626,233 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845054549   ⟹   ENSCAFP00845042882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2745,592,270 - 45,626,233 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845054552   ⟹   ENSCAFP00845042884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2745,592,270 - 45,618,740 (-)Ensembl
RefSeq Acc Id: XM_005637384   ⟹   XP_005637441
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12745,222,647 - 45,249,317 (-)NCBI
Dog10K_Boxer_Tasha271,434,437 - 1,460,750 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038439542   ⟹   XP_038295470
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02745,592,265 - 45,618,871 (-)NCBI
RefSeq Acc Id: XM_038514192   ⟹   XP_038370120
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12745,520,711 - 45,547,059 (-)NCBI
RefSeq Acc Id: XM_038576252   ⟹   XP_038432180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.027788,311 - 814,762 (+)NCBI
RefSeq Acc Id: XM_038642049   ⟹   XP_038497977
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02745,493,999 - 45,520,299 (-)NCBI
RefSeq Acc Id: XP_005637441   ⟸   XM_005637384
- UniProtKB: A0A8C0T1Z7 (UniProtKB/TrEMBL),   A0A8I3QBE3 (UniProtKB/TrEMBL),   A0A8C0K2J6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038370120   ⟸   XM_038514192
RefSeq Acc Id: XP_038497977   ⟸   XM_038642049
RefSeq Acc Id: XP_038295470   ⟸   XM_038439542
- UniProtKB: A0A8C0T1Z7 (UniProtKB/TrEMBL),   A0A8I3QBE3 (UniProtKB/TrEMBL),   A0A8C0K2J6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432180   ⟸   XM_038576252
- UniProtKB: A0A8C0K2J6 (UniProtKB/TrEMBL),   A0A8C0T1Z7 (UniProtKB/TrEMBL),   A0A8I3QBE3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845042884   ⟸   ENSCAFT00845054552
Ensembl Acc Id: ENSCAFP00845042879   ⟸   ENSCAFT00845054546
Ensembl Acc Id: ENSCAFP00845042882   ⟸   ENSCAFT00845054549


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016151 UniProtKB/TrEMBL
  ENSCAFG00030026222 UniProtKB/TrEMBL
  ENSCAFG00040018822 UniProtKB/TrEMBL
  ENSCAFG00845030719 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025632.5 UniProtKB/TrEMBL
  ENSCAFT00000069982.2 UniProtKB/TrEMBL
  ENSCAFT00000079755.2 UniProtKB/TrEMBL
  ENSCAFT00030048524.1 UniProtKB/TrEMBL
  ENSCAFT00030048525.1 UniProtKB/TrEMBL
  ENSCAFT00030048527.1 UniProtKB/TrEMBL
  ENSCAFT00040034982.1 UniProtKB/TrEMBL
  ENSCAFT00040035010.1 UniProtKB/TrEMBL
  ENSCAFT00040035067.1 UniProtKB/TrEMBL
  ENSCAFT00845054546 ENTREZGENE
  ENSCAFT00845054546.1 UniProtKB/TrEMBL
  ENSCAFT00845054549.1 UniProtKB/TrEMBL
  ENSCAFT00845054552.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2320.30 UniProtKB/TrEMBL
  6.10.250.1620 UniProtKB/TrEMBL
InterPro ATPase_E_C UniProtKB/TrEMBL
  ATPase_V1_Esu UniProtKB/TrEMBL
KEGG Report cfa:477740 UniProtKB/TrEMBL
NCBI Gene ATP6V1E1 ENTREZGENE
PANTHER PTHR45715 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT E 1 UniProtKB/TrEMBL
Pfam vATP-synt_E UniProtKB/TrEMBL
Superfamily-SCOP V-type ATPase subunit E-like UniProtKB/TrEMBL
UniProt A0A8C0K2J6 ENTREZGENE
  A0A8C0PIX0_CANLF UniProtKB/TrEMBL
  A0A8C0T1Z7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T545_CANLF UniProtKB/TrEMBL
  A0A8I3QAL3_CANLF UniProtKB/TrEMBL
  A0A8I3QBE3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QTJ1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:111358 ENTREZGENE