ATP6V0E1 (ATPase H+ transporting V0 subunit e1) - Rat Genome Database

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Gene: ATP6V0E1 (ATPase H+ transporting V0 subunit e1) Canis lupus familiaris
Analyze
Symbol: ATP6V0E1
Name: ATPase H+ transporting V0 subunit e1
RGD ID: 12061647
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN response to amino acid (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); atrial heart septal defect 7 (ortholog); Atrial Septal Defect with Atrioventricular Conduction Defects (ortholog); FOUND IN proton-transporting V-type ATPase complex (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP6H; ATP6V0E; V-ATPase 9.2 kDa membrane accessory protein; V-ATPase M9.2 subunit; V-ATPase subunit e 1; V-type proton ATPase subunit e 1; Vacuolar ATP synthase subunit e 1; vacuolar proton pump subunit e 1; vacuolar proton-ATPase subunit ATP6H
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1439,378,007 - 39,409,968 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl439,378,004 - 39,409,981 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha439,323,465 - 39,355,356 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0439,749,010 - 39,780,983 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl439,749,007 - 39,780,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1439,565,769 - 39,597,687 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0439,755,511 - 39,787,428 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0440,264,617 - 40,296,553 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V0E1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1439,378,007 - 39,409,968 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl439,378,004 - 39,409,981 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha439,323,465 - 39,355,356 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0439,749,010 - 39,780,983 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl439,749,007 - 39,780,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1439,565,769 - 39,597,687 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0439,755,511 - 39,787,428 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0440,264,617 - 40,296,553 (-)NCBIUU_Cfam_GSD_1.0
ATP6V0E1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385172,983,771 - 173,035,445 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5172,983,771 - 173,035,445 (+)EnsemblGRCh38hg38GRCh38
GRCh375172,410,774 - 172,462,448 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,343,369 - 172,394,506 (+)NCBINCBI36Build 36hg18NCBI36
Build 345172,343,368 - 172,394,506NCBI
Celera5168,443,924 - 168,495,366 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5167,505,479 - 167,556,521 (+)NCBIHuRef
CHM1_15171,843,454 - 171,894,641 (+)NCBICHM1_1
T2T-CHM13v2.05173,523,874 - 173,575,550 (+)NCBIT2T-CHM13v2.0
Atp6v0e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,895,370 - 26,918,621 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,882,205 - 26,918,621 (+)EnsemblGRCm39 Ensembl
GRCm381726,676,396 - 26,699,647 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,663,231 - 26,699,647 (+)EnsemblGRCm38mm10GRCm38
MGSCv371726,813,341 - 26,836,592 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,403,996 - 26,427,237 (+)NCBIMGSCv36mm8
Celera1727,212,703 - 27,236,263 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.46NCBI
Atp6v0e1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,984,084 - 17,007,156 (-)NCBIGRCr8
mRatBN7.21016,479,656 - 16,502,732 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1016,479,567 - 16,524,434 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1021,229,547 - 21,252,658 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01020,718,119 - 20,741,226 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01016,207,894 - 16,230,961 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01016,769,857 - 16,792,930 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,769,666 - 16,792,909 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01016,661,968 - 16,685,040 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,741,507 - 16,764,579 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11016,742,555 - 16,765,628 (-)NCBI
Celera1016,138,176 - 16,161,412 (-)NCBICelera
Cytogenetic Map10q12NCBI
Atp6v0e1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540825,667,703 - 25,703,550 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540825,667,703 - 25,703,550 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0E1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24168,122,157 - 168,173,543 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15166,261,700 - 166,313,085 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05168,336,845 - 168,388,230 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15175,246,088 - 175,297,288 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,246,088 - 175,297,289 (+)Ensemblpanpan1.1panPan2
Atp6v0e1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,787,496 - 93,811,256 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366092,510,182 - 2,533,925 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366092,510,178 - 2,533,934 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0E1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11651,225,719 - 51,260,712 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21655,538,813 - 55,574,011 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap16qNCBI
ATP6V0E1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,149,843 - 75,199,475 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2375,149,710 - 75,200,192 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660343,412,129 - 3,462,226 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0e1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473317,032,011 - 17,070,152 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473317,032,792 - 17,069,319 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP6V0E1
256 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000046508   ⟹   ENSCAFP00000039612
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl439,378,004 - 39,409,981 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000088949   ⟹   ENSCAFP00000046930
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl439,378,181 - 39,409,975 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845001260   ⟹   ENSCAFP00845000964
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl439,749,007 - 39,780,996 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845001274   ⟹   ENSCAFP00845000978
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl439,749,184 - 39,780,990 (-)Ensembl
RefSeq Acc Id: NM_001003128   ⟹   NP_001003128
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1439,378,007 - 39,409,968 (-)NCBI
Dog10K_Boxer_Tasha439,323,465 - 39,355,356 (-)NCBI
ROS_Cfam_1.0439,749,010 - 39,780,983 (-)NCBI
UMICH_Zoey_3.1439,565,769 - 39,597,687 (-)NCBI
UNSW_CanFamBas_1.0439,755,511 - 39,787,428 (-)NCBI
UU_Cfam_GSD_1.0440,264,617 - 40,296,553 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001003128   ⟸   NM_001003128
- UniProtKB: Q9N0Q1 (UniProtKB/Swiss-Prot),   Q9BDP4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSCAFP00000046930   ⟸   ENSCAFT00000088949
Ensembl Acc Id: ENSCAFP00000039612   ⟸   ENSCAFT00000046508
Ensembl Acc Id: ENSCAFP00845000964   ⟸   ENSCAFT00845001260
Ensembl Acc Id: ENSCAFP00845000978   ⟸   ENSCAFT00845001274

Promoters
RGD ID:13682976
Promoter ID:EPDNEW_C1046
Type:initiation region
Name:ATP6V0E1_1
Description:ATPase H+ transporting V0 subunit e1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1439,409,994 - 39,410,054EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031898 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001752 UniProtKB/TrEMBL
  ENSCAFG00040000236 UniProtKB/TrEMBL
  ENSCAFG00845000758 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000046508.3 UniProtKB/TrEMBL
  ENSCAFT00030003173.1 UniProtKB/TrEMBL
  ENSCAFT00030003193.1 UniProtKB/TrEMBL
  ENSCAFT00030003199.1 UniProtKB/TrEMBL
  ENSCAFT00040000390.1 UniProtKB/TrEMBL
  ENSCAFT00040000405.1 UniProtKB/TrEMBL
  ENSCAFT00845001260 ENTREZGENE
  ENSCAFT00845001260.1 UniProtKB/TrEMBL
  ENSCAFT00845001274.1 UniProtKB/TrEMBL
InterPro ATPase_V0-cplx_e1/e2_su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_V0-cplx_e1/e2_su_met UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:403729 UniProtKB/Swiss-Prot
NCBI Gene ATP6V0E1 ENTREZGENE
PANTHER PTHR12263 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT E 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ATP_synt_H UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF V-ATP_synth_e1/e2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0LWQ6_CANLF UniProtKB/TrEMBL
  A0A8C0LWS9_CANLF UniProtKB/TrEMBL
  A0A8C0PTQ3_CANLF UniProtKB/TrEMBL
  A0A8I3MEJ9_CANLF UniProtKB/TrEMBL
  A0A8I3MGE7_CANLF UniProtKB/TrEMBL
  Q9BDP4 ENTREZGENE
  Q9N0Q1 ENTREZGENE
  VA0E1_CANLF UniProtKB/Swiss-Prot
UniProt Secondary Q9N0Q1 UniProtKB/Swiss-Prot
VGNC ID VGNC:38275 ENTREZGENE