CRYBA2 (crystallin beta A2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CRYBA2 (crystallin beta A2) Pan paniscus
Analyze
Symbol: CRYBA2
Name: crystallin beta A2
RGD ID: 12030491
Description: ENCODES a protein that exhibits identical protein binding (inferred); structural constituent of eye lens (inferred); INVOLVED IN lens development in camera-type eye (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cataract 42 (ortholog); cerebrotendinous xanthomatosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-crystallin A2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,621,127 - 121,624,991 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,636,092 - 121,639,956 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,248,236 - 106,252,081 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,841,620 - 224,844,836 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,841,620 - 224,844,836 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CRYBA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,621,127 - 121,624,991 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,636,092 - 121,639,956 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,248,236 - 106,252,081 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,841,620 - 224,844,836 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,841,620 - 224,844,836 (-)Ensemblpanpan1.1panPan2
CRYBA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,990,190 - 218,993,422 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,990,189 - 218,993,422 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,854,912 - 219,858,144 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,563,156 - 219,566,371 (-)NCBINCBI36Build 36hg18NCBI36
Build 342219,680,416 - 219,683,632NCBI
Celera2213,624,625 - 213,627,840 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,708,940 - 211,712,155 (-)NCBIHuRef
CHM1_12219,862,369 - 219,865,584 (-)NCBICHM1_1
T2T-CHM13v2.02219,478,565 - 219,481,797 (-)NCBIT2T-CHM13v2.0
Cryba2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,929,093 - 74,938,001 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,929,093 - 74,932,302 (-)EnsemblGRCm39 Ensembl
GRCm38174,889,934 - 74,898,842 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,889,934 - 74,893,143 (-)EnsemblGRCm38mm10GRCm38
MGSCv37174,936,518 - 74,939,709 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,823,151 - 74,826,342 (-)NCBIMGSCv36mm8
Celera175,444,997 - 75,448,185 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
Cryba2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,895,921 - 83,906,651 (-)NCBIGRCr8
mRatBN7.2976,447,250 - 76,457,968 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,447,251 - 76,450,460 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,892,244 - 84,895,466 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0990,021,196 - 90,024,416 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,407,351 - 88,410,573 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,151,056 - 82,154,266 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,151,057 - 82,154,266 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,919,636 - 81,922,846 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,222,839 - 74,226,049 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,369,821 - 74,373,031 (-)NCBI
Celera974,018,716 - 74,021,926 (-)NCBICelera
Cytogenetic Map9q33NCBI
Cryba2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,441,007 - 14,444,497 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,438,658 - 14,444,469 (+)NCBIChiLan1.0ChiLan1.0
CRYBA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,556,308 - 25,567,952 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,556,303 - 25,564,284 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,376,501 - 26,388,150 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,571,744 - 25,583,391 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,571,739 - 25,579,718 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,476,328 - 25,487,970 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,411,439 - 25,423,061 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,432,174 - 25,443,825 (-)NCBIUU_Cfam_GSD_1.0
Cryba2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,067,853 - 175,071,056 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,410,450 - 1,413,888 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,410,634 - 1,413,735 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRYBA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15121,013,626 - 121,020,454 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115121,013,611 - 121,016,869 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215134,006,101 - 134,006,916 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRYBA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,889,529 - 104,893,661 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,889,592 - 104,892,485 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,500,195 - 94,504,503 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cryba2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,023,350 - 6,027,806 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,023,307 - 6,027,792 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000019982   ⟹   ENSPPAP00000004335
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B224,841,620 - 224,844,836 (-)Ensembl
RefSeq Acc Id: XM_008971975   ⟹   XP_008970223
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,621,132 - 121,624,972 (-)NCBI
NHGRI_mPanPan12B121,636,097 - 121,639,938 (-)NCBI
Mhudiblu_PPA_v02B106,248,241 - 106,252,081 (-)NCBI
PanPan1.12B224,841,620 - 224,844,836 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034953853   ⟹   XP_034809744
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,621,127 - 121,624,991 (-)NCBI
NHGRI_mPanPan12B121,636,092 - 121,639,956 (-)NCBI
Mhudiblu_PPA_v02B106,248,236 - 106,252,081 (-)NCBI
RefSeq Acc Id: XM_034953854   ⟹   XP_034809745
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,621,132 - 121,624,973 (-)NCBI
NHGRI_mPanPan12B121,636,097 - 121,639,939 (-)NCBI
Mhudiblu_PPA_v02B106,248,241 - 106,252,081 (-)NCBI
RefSeq Acc Id: XM_034953855   ⟹   XP_034809746
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,621,132 - 121,624,973 (-)NCBI
NHGRI_mPanPan12B121,636,097 - 121,639,939 (-)NCBI
Mhudiblu_PPA_v02B106,248,241 - 106,252,081 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008970223 (Get FASTA)   NCBI Sequence Viewer  
  XP_034809744 (Get FASTA)   NCBI Sequence Viewer  
  XP_034809745 (Get FASTA)   NCBI Sequence Viewer  
  XP_034809746 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000004335.1
RefSeq Acc Id: XP_008970223   ⟸   XM_008971975
- UniProtKB: A0A2R8ZH79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034809744   ⟸   XM_034953853
- UniProtKB: A0A2R8ZH79 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034809746   ⟸   XM_034953855
- UniProtKB: A0A2R8ZH79 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034809745   ⟸   XM_034953854
- UniProtKB: A0A2R8ZH79 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000004335   ⟸   ENSPPAT00000019982

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000018250 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000019982.1 UniProtKB/TrEMBL
Gene3D-CATH Crystallins UniProtKB/TrEMBL
InterPro Beta/Gamma-Crystallin UniProtKB/TrEMBL
  Beta/gamma_crystallin UniProtKB/TrEMBL
  G_crystallin-like UniProtKB/TrEMBL
KEGG Report pps:100990632 UniProtKB/TrEMBL
NCBI Gene CRYBA2 ENTREZGENE
PANTHER BETA-CRYSTALLIN A2 UniProtKB/TrEMBL
  BETA/GAMMA CRYSTALLIN UniProtKB/TrEMBL
Pfam Crystall UniProtKB/TrEMBL
PRINTS BGCRYSTALLIN UniProtKB/TrEMBL
PROSITE CRYSTALLIN_BETA_GAMMA UniProtKB/TrEMBL
SMART XTALbg UniProtKB/TrEMBL
Superfamily-SCOP SSF49695 UniProtKB/TrEMBL
UniProt A0A2R8ZH79 ENTREZGENE, UniProtKB/TrEMBL