BFSP2 (beaded filament structural protein 2) - Rat Genome Database

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Gene: BFSP2 (beaded filament structural protein 2) Pan paniscus
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Symbol: BFSP2
Name: beaded filament structural protein 2
RGD ID: 12028922
Description: ENCODES a protein that exhibits structural constituent of eye lens (inferred); structural molecule activity (inferred); INVOLVED IN cell maturation (ortholog); cytoskeleton organization (ortholog); intermediate filament cytoskeleton organization (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); cataract (ortholog); cataract 12 multiple types (ortholog); FOUND IN cytoplasm (inferred); cytoskeleton (inferred); intermediate filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phakinin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,348,153 - 131,422,812 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,352,881 - 131,427,540 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,470,362 - 130,543,610 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13137,946,886 - 138,019,642 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3137,946,969 - 138,016,584 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BFSP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,348,153 - 131,422,812 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,352,881 - 131,427,540 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,470,362 - 130,543,610 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13137,946,886 - 138,019,642 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3137,946,969 - 138,016,584 (+)Ensemblpanpan1.1panPan2
BFSP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,400,056 - 133,475,208 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,400,056 - 133,475,222 (+)EnsemblGRCh38hg38GRCh38
GRCh373133,118,900 - 133,194,052 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363134,601,480 - 134,676,746 (+)NCBINCBI36Build 36hg18NCBI36
Build 343134,601,487 - 134,676,754NCBI
Celera3131,545,338 - 131,620,496 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3130,499,190 - 130,574,278 (+)NCBIHuRef
CHM1_13133,082,138 - 133,157,359 (+)NCBICHM1_1
T2T-CHM13v2.03136,142,708 - 136,220,306 (+)NCBIT2T-CHM13v2.0
Bfsp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,302,123 - 103,357,608 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9103,302,123 - 103,357,619 (-)EnsemblGRCm39 Ensembl
GRCm389103,424,924 - 103,480,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,424,924 - 103,480,420 (-)EnsemblGRCm38mm10GRCm38
MGSCv379103,327,254 - 103,382,658 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369103,283,074 - 103,338,478 (-)NCBIMGSCv36mm8
Celera9102,975,927 - 103,032,126 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map955.37NCBI
Bfsp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,885,087 - 112,942,246 (-)NCBIGRCr8
mRatBN7.28104,006,226 - 104,063,399 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8104,006,226 - 104,063,399 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8109,665,688 - 109,722,204 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,864,851 - 107,921,377 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,707,540 - 105,764,074 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,908,614 - 111,965,889 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,908,614 - 111,965,889 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08111,300,027 - 111,356,813 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,464,778 - 108,522,722 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8103,381,967 - 103,438,712 (-)NCBICelera
Cytogenetic Map8q32NCBI
Bfsp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555015,083,456 - 5,145,256 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555015,083,456 - 5,145,256 (-)NCBIChiLan1.0ChiLan1.0
BFSP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,334,080 - 30,394,202 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2329,992,021 - 30,396,840 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2330,313,068 - 30,373,020 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02330,853,777 - 30,913,731 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2330,853,717 - 30,916,377 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12330,547,685 - 30,607,662 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02330,605,760 - 30,665,697 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02330,852,922 - 30,912,879 (+)NCBIUU_Cfam_GSD_1.0
Bfsp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560269,871,832 - 69,939,471 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365296,632,197 - 6,699,998 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365296,632,292 - 6,699,968 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BFSP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1374,558,297 - 74,639,455 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11374,557,878 - 74,639,459 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,022,622 - 82,103,833 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BFSP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,854,537 - 56,920,987 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,855,060 - 56,918,760 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604129,840,900 - 29,906,937 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bfsp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247309,685,568 - 9,772,984 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247309,685,568 - 9,772,984 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000057642   ⟹   ENSPPAP00000034758
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3137,946,969 - 138,016,584 (+)Ensembl
RefSeq Acc Id: XM_055110472   ⟹   XP_054966447
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22131,348,153 - 131,422,812 (+)NCBI
NHGRI_mPanPan13131,352,881 - 131,427,540 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054966447 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000034758.1
Ensembl Acc Id: ENSPPAP00000034758   ⟸   ENSPPAT00000057642
RefSeq Acc Id: XP_054966447   ⟸   XM_055110472
- UniProtKB: A0A2R9BYL1 (UniProtKB/TrEMBL)
Protein Domains
IF rod


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040217 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057642.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  Single helix bin UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro IF_rod_dom UniProtKB/TrEMBL
  Keratin_I UniProtKB/TrEMBL
NCBI Gene BFSP2 ENTREZGENE
PANTHER PTHR23239 UniProtKB/TrEMBL
  PTHR23239:SF32 UniProtKB/TrEMBL
Pfam Filament UniProtKB/TrEMBL
PRINTS TYPE1KERATIN UniProtKB/TrEMBL
PROSITE IF_ROD_2 UniProtKB/TrEMBL
SMART Filament UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/TrEMBL
UniProt A0A2R9BYL1 ENTREZGENE, UniProtKB/TrEMBL