LOC100978392 (gamma-crystallin C) - Rat Genome Database

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Gene: LOC100978392 (gamma-crystallin C) Pan paniscus
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Symbol: LOC100978392 (Ensembl: CRYGC)
Name: gamma-crystallin C (Ensembl:crystallin gamma C)
RGD ID: 12021166
Description: ENCODES a protein that exhibits structural constituent of eye lens (inferred); INVOLVED IN camera-type eye development (ortholog); eye development (ortholog); lens development in camera-type eye (ortholog); ASSOCIATED WITH cataract (ortholog); cataract 2 multiple types (ortholog); cataract 30 (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CRYGC; crystallin gamma C
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213110,733,571 - 110,745,023 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B110,748,547 - 110,759,999 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B95,359,514 - 95,361,201 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B213,482,830 - 213,484,517 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B213,482,830 - 213,484,517 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100978392
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213110,733,571 - 110,745,023 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B110,748,547 - 110,759,999 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B95,359,514 - 95,361,201 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B213,482,830 - 213,484,517 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B213,482,830 - 213,484,517 (-)Ensemblpanpan1.1panPan2
CRYGC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382208,128,137 - 208,129,828 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2208,128,137 - 208,129,828 (-)EnsemblGRCh38hg38GRCh38
GRCh372208,992,861 - 208,994,552 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362208,701,108 - 208,702,872 (-)NCBINCBI36Build 36hg18NCBI36
Build 342208,818,368 - 208,820,133NCBI
Celera2202,761,129 - 202,762,822 (-)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2200,841,316 - 200,843,009 (-)NCBIHuRef
CHM1_12208,998,651 - 209,000,344 (-)NCBICHM1_1
T2T-CHM13v2.02208,608,155 - 208,619,118 (-)NCBIT2T-CHM13v2.0
Crygc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39165,110,684 - 65,112,691 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl165,110,684 - 65,112,848 (-)EnsemblGRCm39 Ensembl
GRCm38165,071,525 - 65,073,532 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl165,071,525 - 65,073,689 (-)EnsemblGRCm38mm10GRCm38
MGSCv37165,118,105 - 65,120,095 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36165,005,875 - 65,007,781 (-)NCBIMGSCv36mm8
Celera165,564,736 - 65,566,727 (-)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.81NCBI
Crygc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8973,945,332 - 73,947,367 (-)NCBIGRCr8
mRatBN7.2966,451,591 - 66,453,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl966,451,593 - 66,453,626 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx974,964,820 - 74,966,876 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0980,100,128 - 80,102,167 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0978,508,558 - 78,510,618 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0971,786,246 - 71,788,281 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl971,786,248 - 71,788,281 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0970,780,411 - 70,782,446 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4963,720,585 - 63,722,620 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1963,867,584 - 63,869,472 (-)NCBI
Celera963,847,235 - 63,849,270 (-)NCBICelera
Cytogenetic Map9q32NCBI
CRYGC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3716,424,884 - 16,482,227 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0 Ensembl3716,367,491 - 16,379,514 (-)EnsemblROS_Cfam_1.0 Ensembl
LOC110257071
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15111,256,725 - 111,258,277 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115111,256,707 - 111,258,291 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CRYGC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11093,925,842 - 93,928,514 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1093,925,908 - 93,927,583 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040105,439,777 - 105,441,829 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000035196   ⟹   ENSPPAP00000012530
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B213,482,830 - 213,484,517 (-)Ensembl
RefSeq Acc Id: XM_003820816   ⟹   XP_003820864
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213110,733,571 - 110,745,023 (-)NCBI
NHGRI_mPanPan12B110,748,547 - 110,759,999 (-)NCBI
Mhudiblu_PPA_v02B95,359,514 - 95,361,201 (-)NCBI
PanPan1.12B213,482,830 - 213,484,517 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003820864 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000012530.1
RefSeq Acc Id: XP_003820864   ⟸   XM_003820816
- UniProtKB: A0A2R9A6L2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000012530   ⟸   ENSPPAT00000035196
Protein Domains
Beta/gamma crystallin 'Greek key'


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029445 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035196.1 UniProtKB/TrEMBL
Gene3D-CATH Crystallins UniProtKB/TrEMBL
InterPro Beta/Gamma-Crystallin UniProtKB/TrEMBL
  Beta/gamma_crystallin UniProtKB/TrEMBL
  G_crystallin-like UniProtKB/TrEMBL
KEGG Report pps:100978392 UniProtKB/TrEMBL
NCBI Gene CRYGC ENTREZGENE
PANTHER BETA/GAMMA CRYSTALLIN UniProtKB/TrEMBL
  GAMMA-CRYSTALLIN C UniProtKB/TrEMBL
Pfam Crystall UniProtKB/TrEMBL
PRINTS BGCRYSTALLIN UniProtKB/TrEMBL
PROSITE CRYSTALLIN_BETA_GAMMA UniProtKB/TrEMBL
SMART XTALbg UniProtKB/TrEMBL
Superfamily-SCOP SSF49695 UniProtKB/TrEMBL
UniProt A0A2R9A6L2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-25 LOC100978392  gamma-crystallin C  CRYGC  crystallin gamma C  Symbol and/or name change 5135510 APPROVED